Wall clock time and date at job start Mon Mar 30 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.49097 * 2 1 4 4 C 1.51510 * 110.67264 * 122.78549 * 2 1 3 5 5 O 1.21268 * 126.49148 * 298.67324 * 4 2 1 6 6 N 1.34452 * 107.01426 * 118.65445 * 4 2 1 7 7 C 1.38528 * 112.40079 * 0.02562 * 6 4 2 8 8 N 1.33510 * 131.63446 * 180.02562 * 7 6 4 9 9 C 1.31672 * 120.92417 * 179.97438 * 8 7 6 10 10 N 1.31736 * 122.40761 * 0.02562 * 9 8 7 11 11 C 1.33469 * 120.48257 * 359.97438 * 10 9 8 12 12 N 1.38584 * 120.69578 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00272 * 264.31509 * 12 11 10 14 14 C 1.36933 * 119.99550 * 84.31663 * 12 11 10 15 15 H 1.07998 * 120.00387 * 6.74235 * 14 12 11 16 16 C 1.38850 * 119.99802 * 186.74065 * 14 12 11 17 17 N 1.31536 * 120.00227 * 6.86141 * 16 14 12 18 18 Si 1.86802 * 119.99725 * 186.86380 * 16 14 12 19 19 H 1.48491 * 109.47401 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47151 * 120.00310 * 18 16 14 21 21 H 1.48502 * 109.47133 * 239.99509 * 18 16 14 22 22 C 1.38542 * 118.60365 * 0.02562 * 11 10 9 23 23 H 1.09005 * 109.47334 * 187.33927 * 1 2 3 24 24 H 1.09010 * 109.47009 * 307.33417 * 1 2 3 25 25 H 1.08993 * 109.47585 * 67.33402 * 1 2 3 26 26 H 0.97008 * 123.80134 * 180.02562 * 6 4 2 27 27 H 1.07995 * 118.79594 * 179.97438 * 9 8 7 28 28 H 1.08995 * 109.47264 * 354.23590 * 13 12 11 29 29 H 1.09003 * 109.47203 * 114.23734 * 13 12 11 30 30 H 1.09003 * 109.47130 * 234.23452 * 13 12 11 31 31 H 0.96994 * 120.00026 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0648 -0.7676 1.1917 5 8 1.8818 -0.5033 2.3610 6 7 2.7805 -1.7975 0.7073 7 6 2.7978 -1.8233 -0.6776 8 7 3.3779 -2.6591 -1.5421 9 6 3.2540 -2.4825 -2.8410 10 7 2.5621 -1.4865 -3.3553 11 6 1.9506 -0.6055 -2.5607 12 7 1.2220 0.4443 -3.0970 13 6 1.8462 1.7590 -3.2645 14 6 -0.0815 0.2527 -3.4702 15 1 -0.5751 -0.6818 -3.2477 16 6 -0.7686 1.2598 -4.1346 17 7 -0.1325 2.3428 -4.5252 18 14 -2.5965 1.0766 -4.4736 19 1 -3.0716 -0.2239 -3.9372 20 1 -3.3354 2.1839 -3.8154 21 1 -2.8354 1.1244 -5.9385 22 6 2.0606 -0.7620 -1.1885 23 1 -0.3634 -1.0193 0.1313 24 1 -0.3633 0.6233 0.8172 25 1 -0.3634 0.3960 -0.9482 26 1 3.2338 -2.4493 1.2648 27 1 3.7381 -3.1793 -3.5093 28 1 2.8422 1.7473 -2.8221 29 1 1.9231 1.9920 -4.3266 30 1 1.2376 2.5159 -2.7697 31 1 -0.6126 3.0465 -4.9890 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:41 Heat of formation + Delta-G solvation = 63.380225 kcal Electronic energy + Delta-G solvation = -18264.803293 eV Core-core repulsion = 15355.186881 eV Total energy + Delta-G solvation = -2909.616412 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72625 -39.27021 -36.48082 -36.02236 -33.22441 -32.03920 -30.91952 -28.94917 -26.37363 -25.33318 -24.30098 -22.48135 -21.80981 -20.19648 -18.43544 -17.56907 -16.83447 -16.17240 -15.91541 -15.01802 -14.76373 -14.18414 -14.06534 -13.93640 -13.67036 -13.11337 -12.49340 -12.20912 -11.77847 -11.51772 -11.43647 -11.28635 -10.96031 -10.77885 -10.36728 -10.31606 -10.18163 -9.88114 -9.29418 -8.98220 -8.73533 -8.42022 -7.45561 -5.98798 -3.48110 1.28081 1.52191 2.56399 2.72403 3.24196 3.31311 3.33265 4.08773 4.17933 4.28882 4.55570 4.64749 4.82894 5.04044 5.24277 5.48381 5.60621 5.76209 6.02650 6.15864 6.25383 6.33951 6.45659 6.56273 6.79316 6.93639 7.24879 7.45651 7.53395 7.63568 7.95117 8.06182 8.68443 8.88686 9.52952 9.84921 10.98464 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.008507 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.125042 B = 3290.587907 C = 3867.481015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 H 0.123 0.877 4 C 0.540 3.460 5 O -0.499 6.499 6 N -0.644 5.644 7 C 0.383 3.617 8 N -0.567 5.567 9 C 0.327 3.673 10 N -0.544 5.544 11 C 0.489 3.511 12 N -0.542 5.542 13 C 0.169 3.831 14 C -0.255 4.255 15 H 0.080 0.920 16 C 0.013 3.987 17 N -0.899 5.899 18 Si 0.918 3.082 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.286 1.286 22 C -0.249 4.249 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.413 0.587 27 H 0.194 0.806 28 H -0.002 1.002 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -4.795 5.806 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.081 4.081 3 H 0.140 0.860 4 C 0.327 3.673 5 O -0.372 6.372 6 N -0.291 5.291 7 C 0.144 3.856 8 N -0.290 5.290 9 C 0.036 3.964 10 N -0.265 5.265 11 C 0.254 3.746 12 N -0.260 5.260 13 C 0.026 3.974 14 C -0.383 4.383 15 H 0.098 0.902 16 C -0.186 4.186 17 N -0.543 5.543 18 Si 0.747 3.253 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.261 4.261 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.251 0.749 27 H 0.210 0.790 28 H 0.016 0.984 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.244 -4.888 5.714 8.635 hybrid contribution -0.859 -0.061 0.402 0.951 sum 3.385 -4.950 6.117 8.566 Atomic orbital electron populations 1.21662 0.89835 1.01994 1.05271 1.20349 0.99408 1.00072 0.88315 0.85981 1.20897 0.76327 0.79905 0.90130 1.90773 1.58661 1.69679 1.18069 1.43433 1.51004 1.30103 1.04539 1.18441 0.91511 0.91111 0.84507 1.67557 1.26562 1.30801 1.04117 1.24543 0.91970 0.92777 0.87108 1.69148 1.10351 1.05701 1.41273 1.17746 0.84506 0.86736 0.85644 1.41647 1.09178 1.04122 1.71053 1.21235 0.91142 0.83361 1.01657 1.19275 0.83889 1.01509 1.33590 0.90169 1.24994 0.99322 0.96595 0.97733 1.70151 1.34560 1.08387 1.41184 0.85974 0.83491 0.77869 0.78008 1.20018 1.21059 1.21219 1.21726 1.07116 1.00694 0.96601 0.93194 0.91970 0.87701 0.74885 0.78998 0.98382 0.91624 0.93091 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.32 37.15 0.35 -1.82 16 2 C -0.06 -0.99 3.58 -92.47 -0.33 -1.32 16 3 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 4 C 0.54 8.63 8.05 -10.73 -0.09 8.54 16 5 O -0.50 -8.89 18.03 5.57 0.10 -8.79 16 6 N -0.64 -9.36 5.83 -11.22 -0.07 -9.42 16 7 C 0.38 6.45 8.32 -154.59 -1.29 5.16 16 8 N -0.57 -9.42 10.48 -13.90 -0.15 -9.57 16 9 C 0.33 5.44 12.24 -92.31 -1.13 4.31 16 10 N -0.54 -11.10 10.51 -14.00 -0.15 -11.25 16 11 C 0.49 10.38 6.00 -154.73 -0.93 9.45 16 12 N -0.54 -12.71 2.89 -122.44 -0.35 -13.07 16 13 C 0.17 3.87 8.95 59.84 0.54 4.40 16 14 C -0.26 -6.40 8.29 -15.05 -0.12 -6.52 16 15 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 16 C 0.01 0.33 5.40 -17.45 -0.09 0.24 16 17 N -0.90 -23.54 9.60 55.49 0.53 -23.01 16 18 Si 0.92 20.21 29.56 -169.99 -5.02 15.19 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.25 -4.61 5.68 -104.18 -0.59 -5.20 16 23 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 24 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 25 H 0.10 2.00 6.40 -51.93 -0.33 1.67 16 26 H 0.41 4.89 8.96 -40.82 -0.37 4.53 16 27 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 28 H 0.00 -0.05 7.90 -51.93 -0.41 -0.46 16 29 H 0.07 1.65 6.81 -51.93 -0.35 1.30 16 30 H 0.05 1.20 7.34 -51.93 -0.38 0.82 16 31 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 270.07 15.07 4.07 4.07 Total: -1.00 -28.14 270.07 -7.80 -35.95 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.08 Total: 2.65 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: -3.69 Total: 17.25 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.18 Total: -66.32 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.10 Total: -8.79 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.14 -7.80 -35.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.326 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds