Wall clock time and date at job start Mon Mar 30 2020 18:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.49097 * 2 1 4 4 C 1.51510 * 110.67264 * 122.78549 * 2 1 3 5 5 O 1.21268 * 126.49148 * 298.67324 * 4 2 1 6 6 N 1.34452 * 107.01426 * 118.65445 * 4 2 1 7 7 C 1.38528 * 112.40079 * 0.02562 * 6 4 2 8 8 N 1.33510 * 131.63446 * 180.02562 * 7 6 4 9 9 C 1.31672 * 120.92417 * 179.97438 * 8 7 6 10 10 N 1.31736 * 122.40761 * 0.02562 * 9 8 7 11 11 C 1.33469 * 120.48257 * 359.97438 * 10 9 8 12 12 N 1.38584 * 120.69578 * 179.97438 * 11 10 9 13 13 C 1.46495 * 120.00272 * 264.31509 * 12 11 10 14 14 C 1.36933 * 119.99550 * 84.31663 * 12 11 10 15 15 H 1.07998 * 120.00387 * 6.74235 * 14 12 11 16 16 C 1.38850 * 119.99802 * 186.74065 * 14 12 11 17 17 N 1.31536 * 120.00227 * 6.86141 * 16 14 12 18 18 Si 1.86802 * 119.99725 * 186.86380 * 16 14 12 19 19 H 1.48491 * 109.47401 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47151 * 120.00310 * 18 16 14 21 21 H 1.48502 * 109.47133 * 239.99509 * 18 16 14 22 22 C 1.38542 * 118.60365 * 0.02562 * 11 10 9 23 23 H 1.09005 * 109.47334 * 187.33927 * 1 2 3 24 24 H 1.09010 * 109.47009 * 307.33417 * 1 2 3 25 25 H 1.08993 * 109.47585 * 67.33402 * 1 2 3 26 26 H 0.97008 * 123.80134 * 180.02562 * 6 4 2 27 27 H 1.07995 * 118.79594 * 179.97438 * 9 8 7 28 28 H 1.08995 * 109.47264 * 354.23590 * 13 12 11 29 29 H 1.09003 * 109.47203 * 114.23734 * 13 12 11 30 30 H 1.09003 * 109.47130 * 234.23452 * 13 12 11 31 31 H 0.96994 * 120.00026 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9115 1.0210 0.0000 4 6 2.0648 -0.7676 1.1917 5 8 1.8818 -0.5033 2.3610 6 7 2.7805 -1.7975 0.7073 7 6 2.7978 -1.8233 -0.6776 8 7 3.3779 -2.6591 -1.5421 9 6 3.2540 -2.4825 -2.8410 10 7 2.5621 -1.4865 -3.3553 11 6 1.9506 -0.6055 -2.5607 12 7 1.2220 0.4443 -3.0970 13 6 1.8462 1.7590 -3.2645 14 6 -0.0815 0.2527 -3.4702 15 1 -0.5751 -0.6818 -3.2477 16 6 -0.7686 1.2598 -4.1346 17 7 -0.1325 2.3428 -4.5252 18 14 -2.5965 1.0766 -4.4736 19 1 -3.0716 -0.2239 -3.9372 20 1 -3.3354 2.1839 -3.8154 21 1 -2.8354 1.1244 -5.9385 22 6 2.0606 -0.7620 -1.1885 23 1 -0.3634 -1.0193 0.1313 24 1 -0.3633 0.6233 0.8172 25 1 -0.3634 0.3960 -0.9482 26 1 3.2338 -2.4493 1.2648 27 1 3.7381 -3.1793 -3.5093 28 1 2.8422 1.7473 -2.8221 29 1 1.9231 1.9920 -4.3266 30 1 1.2376 2.5159 -2.7697 31 1 -0.6126 3.0465 -4.9890 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799660.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:41 Heat of formation + Delta-G solvation = 46.664816 kcal Electronic energy + Delta-G solvation = -18265.528128 eV Core-core repulsion = 15355.186881 eV Total energy + Delta-G solvation = -2910.341247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.13224 -40.69358 -38.06008 -37.51530 -34.76072 -33.52015 -32.59439 -30.43884 -28.21085 -26.77706 -25.91028 -23.89266 -23.40240 -21.57094 -19.89804 -19.22015 -18.33179 -17.79384 -17.27802 -16.56837 -16.28211 -15.68507 -15.55035 -15.30396 -15.23390 -14.78986 -14.13715 -13.74019 -13.23447 -13.14474 -12.88208 -12.81762 -12.70890 -12.54207 -12.07476 -12.02022 -11.77532 -11.30254 -10.78673 -10.75841 -10.28938 -9.83671 -9.27574 -7.86188 -5.40082 -0.13219 0.03160 1.22582 1.40602 1.49218 1.51129 1.60057 2.38099 2.80249 2.84075 2.96057 3.20983 3.29373 3.53282 3.67209 4.11114 4.15085 4.38492 4.57820 4.67547 4.84652 4.91726 5.05139 5.23716 5.37174 5.42590 5.48774 5.61236 5.73639 6.04764 6.21698 6.69153 6.99815 7.24600 7.72322 8.02994 9.10701 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.008507 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.125042 B = 3290.587907 C = 3867.481015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 H 0.128 0.872 4 C 0.553 3.447 5 O -0.511 6.511 6 N -0.626 5.626 7 C 0.392 3.608 8 N -0.555 5.555 9 C 0.335 3.665 10 N -0.575 5.575 11 C 0.473 3.527 12 N -0.559 5.559 13 C 0.188 3.812 14 C -0.256 4.256 15 H 0.073 0.927 16 C -0.033 4.033 17 N -0.929 5.929 18 Si 0.973 3.027 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.292 1.292 22 C -0.255 4.255 23 H 0.052 0.948 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.430 0.570 27 H 0.236 0.764 28 H 0.016 0.984 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.798 -6.444 7.074 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.083 4.083 3 H 0.146 0.854 4 C 0.340 3.660 5 O -0.385 6.385 6 N -0.274 5.274 7 C 0.152 3.848 8 N -0.277 5.277 9 C 0.045 3.955 10 N -0.295 5.295 11 C 0.239 3.761 12 N -0.279 5.279 13 C 0.045 3.955 14 C -0.384 4.384 15 H 0.091 0.909 16 C -0.229 4.229 17 N -0.574 5.574 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.219 1.219 22 C -0.267 4.267 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.271 0.729 27 H 0.252 0.748 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.954 -6.602 7.022 10.837 hybrid contribution -0.916 0.288 0.119 0.968 sum 4.038 -6.314 7.140 10.352 Atomic orbital electron populations 1.21541 0.89836 1.02318 1.04393 1.20397 0.99457 1.00489 0.87995 0.85420 1.20574 0.76110 0.79828 0.89451 1.90786 1.59203 1.70001 1.18478 1.43216 1.50496 1.30044 1.03652 1.18527 0.90604 0.90327 0.85351 1.67719 1.25830 1.30079 1.04104 1.25371 0.90354 0.92178 0.87592 1.69059 1.11656 1.06660 1.42162 1.17913 0.85004 0.86703 0.86463 1.41593 1.09230 1.04899 1.72207 1.20865 0.91671 0.83326 0.99663 1.19278 0.85253 1.00969 1.32900 0.90934 1.25604 1.02458 0.96582 0.98292 1.70299 1.35432 1.09025 1.42668 0.85118 0.79773 0.77849 0.77167 1.19378 1.20991 1.21895 1.21718 1.07307 1.01620 0.96065 0.92877 0.90336 0.90395 0.72866 0.74768 0.96527 0.94611 0.94595 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.96 9.32 71.98 0.67 -3.29 16 2 C -0.06 -1.94 3.58 -11.99 -0.04 -1.98 16 3 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 4 C 0.55 16.17 8.05 87.97 0.71 16.88 16 5 O -0.51 -16.82 18.03 -2.99 -0.05 -16.87 16 6 N -0.63 -16.14 5.83 -308.00 -1.80 -17.94 16 7 C 0.39 12.07 8.32 132.85 1.10 13.18 16 8 N -0.55 -16.55 10.48 -197.90 -2.07 -18.62 16 9 C 0.33 10.13 12.24 180.94 2.22 12.35 16 10 N -0.57 -22.62 10.51 -198.21 -2.08 -24.71 16 11 C 0.47 19.72 6.00 132.74 0.80 20.51 16 12 N -0.56 -26.53 2.89 -541.28 -1.56 -28.09 16 13 C 0.19 8.82 8.95 127.77 1.14 9.97 16 14 C -0.26 -13.04 8.29 84.04 0.70 -12.35 16 15 H 0.07 3.71 7.84 -2.91 -0.02 3.69 16 16 C -0.03 -1.72 5.40 84.88 0.46 -1.26 16 17 N -0.93 -50.15 9.60 21.65 0.21 -49.95 16 18 Si 0.97 42.22 29.56 68.60 2.03 44.25 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 C -0.26 -9.04 5.68 -19.58 -0.11 -9.15 16 23 H 0.05 1.63 8.13 -2.38 -0.02 1.61 16 24 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 25 H 0.08 2.98 6.40 -2.39 -0.02 2.97 16 26 H 0.43 8.56 8.96 -92.70 -0.83 7.72 16 27 H 0.24 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.02 0.68 7.90 -2.39 -0.02 0.66 16 29 H 0.04 1.87 6.81 -2.39 -0.02 1.85 16 30 H 0.04 1.75 7.34 -2.39 -0.02 1.73 16 31 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -60.12 270.07 2.65 -57.47 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.35 Total: 9.61 kcal Atomic # 6 Polarization: 37.21 SS G_CDS: 7.64 Total: 44.85 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -7.31 Total: -139.31 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.05 Total: -16.87 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -60.12 2.65 -57.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799660.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.132 kcal (2) G-P(sol) polarization free energy of solvation -60.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds