Wall clock time and date at job start Mon Mar 30 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46917 * 179.97438 * 10 9 7 12 12 C 1.42898 * 113.99694 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47276 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.66052 * 305.70321 * 13 12 11 15 15 C 1.54705 * 110.74868 * 182.48481 * 13 12 11 16 16 C 1.51643 * 101.92146 * 216.39135 * 15 13 12 17 17 C 1.37746 * 132.17261 * 195.40635 * 16 15 13 18 18 C 1.38342 * 119.98285 * 179.64185 * 17 16 15 19 19 C 1.38288 * 119.76605 * 359.97438 * 18 17 16 20 20 C 1.37931 * 120.34823 * 0.16976 * 19 18 17 21 21 C 1.38883 * 107.04621 * 15.38744 * 16 15 13 22 22 O 1.36383 * 111.31722 * 0.91341 * 21 16 15 23 23 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 25 25 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 26 26 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 27 27 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 28 28 H 1.09001 * 109.47089 * 300.00109 * 12 11 10 29 29 H 1.09001 * 109.47274 * 60.00602 * 12 11 10 30 30 H 1.08991 * 110.94261 * 334.54621 * 15 13 12 31 31 H 1.09004 * 110.93577 * 98.20328 * 15 13 12 32 32 H 1.08006 * 120.00639 * 359.65742 * 17 16 15 33 33 H 1.07998 * 120.12195 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.82724 * 180.15015 * 19 18 17 35 35 H 1.08004 * 119.88032 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8996 0.0001 12 6 2.3709 -6.0556 0.0007 13 6 1.5037 -7.3162 0.0007 14 1 0.7950 -7.2955 0.8286 15 6 2.3838 -8.5869 0.0641 16 6 1.6126 -9.5467 -0.8211 17 6 1.6801 -10.9129 -0.9828 18 6 0.8333 -11.5462 -1.8749 19 6 -0.0791 -10.8029 -2.6012 20 6 -0.1464 -9.4344 -2.4430 21 6 0.7056 -8.7886 -1.5503 22 8 0.8171 -7.4620 -1.2541 23 1 -0.4850 -0.8401 0.0004 24 1 0.6247 -2.5570 0.8897 25 1 0.6242 -2.5567 -0.8903 26 1 2.8720 -3.6043 -0.8904 27 1 2.8720 -3.6042 0.8895 28 1 3.0002 -6.0480 -0.8893 29 1 3.0000 -6.0471 0.8908 30 1 3.3764 -8.3940 -0.3427 31 1 2.4497 -8.9646 1.0845 32 1 2.3937 -11.4897 -0.4131 33 1 0.8840 -12.6173 -2.0032 34 1 -0.7423 -11.2966 -3.2961 35 1 -0.8616 -8.8612 -3.0144 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631194.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:18 Heat of formation + Delta-G solvation = -88.632982 kcal Electronic energy + Delta-G solvation = -16980.755682 eV Core-core repulsion = 14135.795075 eV Total energy + Delta-G solvation = -2844.960607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.16184 -39.19478 -38.23058 -35.79879 -33.98259 -32.24486 -30.99211 -30.82275 -27.14197 -25.95154 -23.57473 -23.31299 -22.70272 -22.52926 -19.07109 -18.63689 -17.90071 -17.63873 -16.84831 -16.75144 -16.41315 -15.66989 -15.20469 -15.11593 -14.67963 -14.32228 -14.23022 -14.03402 -13.87636 -13.57026 -13.02926 -12.80146 -12.67238 -12.55048 -12.30364 -11.92813 -11.83097 -11.79913 -11.66595 -10.86642 -10.72936 -10.55699 -9.87560 -9.15803 -8.77608 -6.49140 0.30301 0.38277 1.52282 1.63106 1.79401 2.19966 2.45820 2.62285 2.76989 3.10213 3.34648 3.62782 3.85933 3.91632 3.99614 4.16408 4.22877 4.25080 4.28922 4.38146 4.44130 4.53221 4.61986 4.71590 4.76463 4.83706 5.05572 5.09244 5.27412 5.36663 5.43907 5.52150 5.69858 5.81871 6.08641 6.19156 6.25078 6.44918 7.35710 8.63797 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.059022 B = 0.003372 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.287450 B = 8300.587233 C = 8616.365589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.040 4.040 3 Si 1.131 2.869 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.620 4.620 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.091 3.909 11 O -0.415 6.415 12 C 0.059 3.941 13 C 0.078 3.922 14 H 0.089 0.911 15 C -0.089 4.089 16 C -0.185 4.185 17 C -0.072 4.072 18 C -0.147 4.147 19 C -0.086 4.086 20 C -0.162 4.162 21 C 0.065 3.935 22 O -0.329 6.329 23 H 0.254 0.746 24 H -0.008 1.008 25 H -0.014 1.014 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -24.986 -1.110 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.237 4.237 3 Si 0.951 3.049 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.658 4.658 8 H 0.080 0.920 9 C -0.027 4.027 10 C 0.016 3.984 11 O -0.336 6.336 12 C -0.017 4.017 13 C 0.023 3.977 14 H 0.106 0.894 15 C -0.126 4.126 16 C -0.186 4.186 17 C -0.090 4.090 18 C -0.165 4.165 19 C -0.103 4.103 20 C -0.181 4.181 21 C 0.021 3.979 22 O -0.244 6.244 23 H 0.064 0.936 24 H 0.011 0.989 25 H 0.005 0.995 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.932 -23.176 -1.221 23.954 hybrid contribution -0.140 -1.346 -0.059 1.354 sum 5.792 -24.522 -1.280 25.229 Atomic orbital electron populations 1.70846 1.08152 1.29928 1.48287 1.27684 0.96547 1.07251 0.92242 0.82784 0.74296 0.70179 0.77672 1.18819 1.20114 1.20354 1.22340 0.95023 0.92378 1.56042 0.92031 1.19138 0.95406 0.93532 0.94670 1.22352 0.94424 0.82052 0.99617 1.87907 1.35489 1.14597 1.95588 1.22801 0.92563 0.83703 1.02606 1.23522 0.94067 0.95209 0.84939 0.89357 1.21749 0.98758 0.90054 1.02051 1.21042 0.99276 0.95807 1.02493 1.20711 0.99070 0.91326 0.97869 1.21488 0.96452 1.01579 0.96994 1.21249 0.98607 0.91500 0.98992 1.20612 1.00348 0.95641 1.01464 1.20191 0.96480 0.83341 0.97937 1.87030 1.75905 1.22150 1.39327 0.93628 0.98926 0.99549 0.93729 0.92596 0.92322 0.88414 0.87601 0.85865 0.82825 0.82169 0.82485 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.65 21.45 0.29 -60.10 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 3 Si 1.13 50.86 29.90 68.60 2.05 52.91 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.62 -36.74 9.11 25.60 0.23 -36.50 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.01 0.55 4.65 29.85 0.14 0.69 16 10 C 0.09 4.16 5.88 71.98 0.42 4.58 16 11 O -0.42 -17.83 10.34 -148.90 -1.54 -19.37 16 12 C 0.06 1.81 5.61 71.98 0.40 2.21 16 13 C 0.08 2.20 3.90 31.18 0.12 2.32 16 14 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.09 -1.72 6.65 30.73 0.20 -1.51 16 16 C -0.19 -4.12 6.27 -19.53 -0.12 -4.24 16 17 C -0.07 -1.17 10.03 22.18 0.22 -0.95 16 18 C -0.15 -2.12 10.07 22.31 0.22 -1.90 16 19 C -0.09 -1.47 10.02 22.21 0.22 -1.25 16 20 C -0.16 -3.97 10.06 22.45 0.23 -3.74 16 21 C 0.07 1.87 7.04 22.68 0.16 2.03 16 22 O -0.33 -11.49 10.83 -97.87 -1.06 -12.55 16 23 H 0.25 16.89 7.22 -92.71 -0.67 16.22 16 24 H -0.01 -0.46 8.01 -2.38 -0.02 -0.48 16 25 H -0.01 -0.86 8.01 -2.39 -0.02 -0.88 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.11 1.75 7.92 -2.39 -0.02 1.73 16 31 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 34 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -76.04 300.78 3.82 -72.21 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.16 Total: 7.09 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 2.92 Total: -40.19 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.29 Total: -60.10 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -2.60 Total: -31.91 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -76.04 3.82 -72.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631194.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.419 kcal (2) G-P(sol) polarization free energy of solvation -76.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds