Wall clock time and date at job start Mon Mar 30 2020 18:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86807 * 120.00371 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46898 * 300.00129 * 3 2 1 6 6 H 1.48497 * 109.46624 * 60.00014 * 3 2 1 7 7 C 1.39894 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00410 * 197.94798 * 7 2 1 9 9 C 1.41216 * 120.00005 * 17.95774 * 7 2 1 10 10 C 1.40829 * 120.18189 * 204.54601 * 9 7 2 11 11 C 1.36432 * 119.81472 * 179.97438 * 10 9 7 12 12 C 1.39314 * 120.18577 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.82302 * 179.97438 * 12 11 10 14 14 C 1.42896 * 117.00132 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46645 * 179.97438 * 14 13 12 16 16 H 1.09003 * 112.85374 * 43.80911 * 15 14 13 17 17 C 1.53789 * 113.61105 * 174.99868 * 15 14 13 18 18 C 1.53788 * 87.17148 * 140.02513 * 17 15 14 19 19 H 1.08995 * 113.61195 * 89.15924 * 18 17 15 20 20 O 1.42894 * 113.61176 * 220.06230 * 18 17 15 21 21 C 1.53785 * 113.69353 * 272.53141 * 15 14 13 22 22 C 1.39314 * 120.36093 * 0.26353 * 12 11 10 23 23 C 1.36442 * 120.18799 * 359.45457 * 22 12 11 24 24 H 0.96999 * 119.99685 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.09134 * 359.95850 * 10 9 7 26 26 H 1.08003 * 119.91047 * 180.02562 * 11 10 9 27 27 H 1.09002 * 109.47229 * 60.00258 * 14 13 12 28 28 H 1.08998 * 109.47214 * 299.99768 * 14 13 12 29 29 H 1.09001 * 113.61348 * 254.61480 * 17 15 14 30 30 H 1.09000 * 113.61567 * 25.43480 * 17 15 14 31 31 H 0.96700 * 113.99761 * 180.02562 * 20 18 17 32 32 H 1.09002 * 113.61067 * 334.56418 * 21 15 14 33 33 H 1.09004 * 113.61031 * 105.37787 * 21 15 14 34 34 H 1.08009 * 119.90758 * 179.70604 * 22 12 11 35 35 H 1.08001 * 120.09433 * 180.27393 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3462 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8841 2.3963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2888 9 6 1.3537 -2.4049 -0.3760 10 6 1.8262 -3.6480 0.0873 11 6 1.1878 -4.7962 -0.2807 12 6 0.0718 -4.7414 -1.1128 13 8 -0.5570 -5.8879 -1.4746 14 6 -1.6954 -5.7615 -2.3292 15 6 -2.2661 -7.1496 -2.6268 16 1 -2.3199 -7.7838 -1.7419 17 6 -3.5697 -7.1177 -3.4420 18 6 -3.0262 -8.3307 -4.2154 19 1 -3.2881 -9.2884 -3.7657 20 8 -3.2953 -8.2827 -5.6180 21 6 -1.6171 -7.8376 -3.8394 22 6 -0.3983 -3.5162 -1.5804 23 6 0.2251 -2.3582 -1.2171 24 1 -0.4849 0.8401 -0.0004 25 1 2.6916 -3.6923 0.7320 26 1 1.5486 -5.7504 0.0740 27 1 -1.3978 -5.2837 -3.2626 28 1 -2.4543 -5.1543 -1.8359 29 1 -4.4591 -7.3389 -2.8519 30 1 -3.6799 -6.2229 -4.0545 31 1 -2.9562 -9.0431 -6.1098 32 1 -1.1927 -7.1402 -4.5616 33 1 -0.9290 -8.6390 -3.5701 34 1 -1.2613 -3.4825 -2.2290 35 1 -0.1433 -1.4089 -1.5769 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218429982.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:42 Heat of formation + Delta-G solvation = -56.301617 kcal Electronic energy + Delta-G solvation = -17173.704445 eV Core-core repulsion = 14330.145831 eV Total energy + Delta-G solvation = -2843.558614 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63613 -38.42801 -36.35577 -35.05934 -33.29494 -29.66451 -29.38058 -27.77058 -25.81494 -24.69948 -22.69332 -21.04627 -20.29781 -19.53213 -17.62397 -17.33022 -16.86746 -15.58202 -15.41309 -14.98297 -14.80651 -13.96796 -13.88331 -13.30613 -12.90487 -12.52229 -12.42297 -12.13587 -11.88841 -11.67561 -11.46557 -11.22866 -11.10505 -10.99730 -10.81605 -10.50448 -10.34976 -9.92409 -9.76929 -9.74626 -9.34508 -8.99045 -7.63258 -6.99009 -6.71133 -4.23271 2.77881 2.98428 3.09628 3.14995 3.22313 3.85931 3.96594 4.24471 4.48995 4.54235 4.63584 4.76331 4.88397 5.37045 5.50698 5.64513 5.66541 5.69144 5.75614 5.85687 5.94073 6.10741 6.15239 6.30146 6.35894 6.76075 6.91543 7.08759 7.30168 7.43685 7.47272 7.58117 7.93641 8.02325 8.17681 8.47635 8.67899 8.92083 9.01684 10.23597 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.045716 B = 0.003999 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.324477 B = 7000.023983 C = 7343.280983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.114 4.114 12 C -0.008 4.008 13 O -0.329 6.329 14 C 0.081 3.919 15 C -0.106 4.106 16 H 0.100 0.900 17 C -0.121 4.121 18 C 0.074 3.926 19 H 0.081 0.919 20 O -0.561 6.561 21 C -0.160 4.160 22 C -0.174 4.174 23 C -0.134 4.134 24 H 0.278 0.722 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.376 0.624 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.149 -10.790 -6.362 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.216 4.216 11 C -0.133 4.133 12 C -0.051 4.051 13 O -0.245 6.245 14 C 0.005 3.995 15 C -0.124 4.124 16 H 0.118 0.882 17 C -0.158 4.158 18 C 0.015 3.985 19 H 0.099 0.901 20 O -0.367 6.367 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.153 4.153 24 H 0.089 0.911 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.223 0.777 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.581 -10.247 -6.118 13.175 hybrid contribution 0.429 0.505 -0.140 0.677 sum -5.152 -9.742 -6.258 12.674 Atomic orbital electron populations 1.69849 1.07533 1.28929 1.36346 1.25875 0.94698 1.01216 0.92392 0.86297 0.81012 0.81137 0.78467 1.18447 1.19803 1.20093 1.19499 0.98136 0.91229 1.40499 0.90473 1.17599 0.91845 0.92184 0.89941 1.20590 1.03187 0.92253 1.05572 1.19608 0.95649 0.97629 1.00442 1.18579 0.97634 0.83922 1.04975 1.85784 1.42524 1.30882 1.65332 1.22379 0.87882 0.95561 0.93722 1.22284 0.95742 0.96886 0.97531 0.88171 1.23055 0.97037 0.98508 0.97197 1.23394 0.95752 0.98087 0.81271 0.90081 1.86530 1.81807 1.48891 1.19428 1.23755 0.96970 1.01066 0.98016 1.20630 1.01533 0.92947 1.04205 1.20948 0.98517 0.96468 0.99402 0.91072 0.88248 0.88585 0.93006 0.92932 0.90577 0.88967 0.77708 0.89170 0.91097 0.88788 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.94 10.96 55.54 0.61 -20.33 16 2 C 0.07 1.90 5.13 -17.34 -0.09 1.81 16 3 Si 0.91 18.85 29.60 -169.99 -5.03 13.81 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.45 9.04 -37.83 -0.34 -12.79 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.09 2.34 5.57 -106.80 -0.60 1.75 16 10 C -0.20 -4.91 9.74 -39.25 -0.38 -5.30 16 11 C -0.11 -2.71 9.92 -39.83 -0.40 -3.11 16 12 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 13 O -0.33 -6.84 10.12 -18.73 -0.19 -7.03 16 14 C 0.08 1.34 4.57 37.16 0.17 1.51 16 15 C -0.11 -1.37 4.01 -89.80 -0.36 -1.73 16 16 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.12 -1.34 7.47 -25.91 -0.19 -1.53 16 18 C 0.07 0.74 5.22 -25.82 -0.13 0.61 16 19 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 20 O -0.56 -5.84 13.67 -35.23 -0.48 -6.32 16 21 C -0.16 -1.87 7.47 -25.83 -0.19 -2.06 16 22 C -0.17 -4.19 8.96 -39.83 -0.36 -4.55 16 23 C -0.13 -3.54 8.64 -39.25 -0.34 -3.88 16 24 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 25 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 26 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.05 0.87 7.34 -51.93 -0.38 0.48 16 28 H 0.05 0.88 7.66 -51.93 -0.40 0.48 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.38 2.19 9.12 45.56 0.42 2.60 16 32 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.03 6.27 -52.48 -0.33 1.70 16 35 H 0.12 3.27 6.16 -52.49 -0.32 2.94 16 LS Contribution 295.58 15.07 4.45 4.45 Total: -1.00 -29.75 295.58 -8.04 -37.79 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.93 Total: 7.33 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.47 Total: -29.71 kcal Atomic # 7 Polarization: -20.94 SS G_CDS: 0.61 Total: -20.33 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.67 Total: -13.35 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.75 -8.04 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218429982.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.508 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds