Wall clock time and date at job start Mon Mar 30 2020 18:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48498 * 109.46946 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47349 * 299.99995 * 3 2 1 6 6 H 1.48506 * 109.47003 * 60.00197 * 3 2 1 7 7 C 1.39939 * 119.99564 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99357 * 162.40953 * 7 2 1 9 9 C 1.41150 * 120.00057 * 342.68570 * 7 2 1 10 10 C 1.40728 * 120.28896 * 335.05830 * 9 7 2 11 11 C 1.36492 * 119.92618 * 179.97438 * 10 9 7 12 12 C 1.38815 * 120.54009 * 0.02562 * 11 10 9 13 13 C 1.38309 * 120.59170 * 359.97438 * 12 11 10 14 14 C 1.38441 * 120.04956 * 359.73532 * 13 12 11 15 15 O 1.35648 * 120.26651 * 180.28425 * 14 13 12 16 16 C 1.42897 * 116.99791 * 0.25441 * 15 14 13 17 17 C 1.52994 * 109.47120 * 180.02562 * 16 15 14 18 18 H 1.09004 * 112.85256 * 43.80758 * 17 16 15 19 19 C 1.53780 * 113.61600 * 174.99726 * 17 16 15 20 20 C 1.53781 * 87.08245 * 139.97879 * 19 17 16 21 21 H 1.09003 * 113.61147 * 89.11563 * 20 19 17 22 22 O 1.42898 * 113.61715 * 220.01948 * 20 19 17 23 23 C 1.53778 * 87.08204 * 334.56994 * 20 19 17 24 24 H 0.97003 * 119.99952 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.03767 * 359.96158 * 10 9 7 26 26 H 1.08002 * 119.72898 * 180.02562 * 11 10 9 27 27 H 1.08000 * 119.70338 * 179.97438 * 12 11 10 28 28 H 1.07995 * 119.96946 * 180.02562 * 13 12 11 29 29 H 1.09005 * 109.46932 * 300.00168 * 16 15 14 30 30 H 1.09001 * 109.47419 * 60.00080 * 16 15 14 31 31 H 1.08998 * 113.61974 * 254.53083 * 19 17 16 32 32 H 1.08997 * 113.61517 * 25.43518 * 19 17 16 33 33 H 0.96702 * 113.99629 * 180.02562 * 22 20 19 34 34 H 1.08996 * 113.61527 * 270.88419 * 23 20 19 35 35 H 1.08998 * 113.61345 * 139.97487 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7026 1.3463 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8839 2.3964 1.2126 7 6 2.0083 -1.2120 -0.0005 8 1 3.0504 -1.2337 -0.2832 9 6 1.3504 -2.4068 0.3627 10 6 0.2191 -2.3682 1.1989 11 6 -0.4116 -3.5281 1.5451 12 6 0.0537 -4.7502 1.0793 13 6 1.1635 -4.8135 0.2564 14 6 1.8185 -3.6517 -0.1149 15 8 2.9039 -3.7083 -0.9264 16 6 3.3169 -5.0031 -1.3681 17 6 4.5477 -4.8669 -2.2666 18 1 5.2850 -4.1680 -1.8714 19 6 5.1472 -6.2154 -2.6988 20 6 5.3668 -5.5846 -4.0839 21 1 6.3282 -5.0813 -4.1870 22 8 5.0842 -6.4714 -5.1682 23 6 4.2064 -4.6332 -3.7478 24 1 -0.4850 0.8401 0.0004 25 1 -0.1495 -1.4219 1.5664 26 1 -1.2798 -3.4947 2.1866 27 1 -0.4556 -5.6596 1.3621 28 1 1.5166 -5.7697 -0.1004 29 1 3.5645 -5.6198 -0.5041 30 1 2.5075 -5.4711 -1.9285 31 1 6.0732 -6.4674 -2.1819 32 1 4.4265 -7.0331 -2.7008 33 1 5.2209 -6.0804 -6.0420 34 1 3.2285 -5.0183 -4.0364 35 1 4.3730 -3.6078 -4.0776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218433882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:45 Heat of formation + Delta-G solvation = -54.263820 kcal Electronic energy + Delta-G solvation = -17579.234896 eV Core-core repulsion = 14735.764648 eV Total energy + Delta-G solvation = -2843.470248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.52938 -38.33923 -36.10936 -34.88507 -33.56149 -29.84953 -28.80233 -27.49482 -25.69658 -25.04557 -22.63670 -20.78949 -20.34080 -19.43080 -17.60236 -17.30124 -16.51660 -15.44749 -15.32146 -14.88240 -14.67739 -14.11989 -13.85793 -13.22935 -12.90011 -12.57823 -12.41526 -12.13402 -11.68910 -11.43135 -11.34651 -11.22690 -11.00183 -10.83188 -10.71232 -10.39147 -10.25838 -9.85105 -9.70657 -9.65556 -9.36600 -9.12692 -7.44140 -6.97548 -6.65571 -4.19954 2.77792 3.03717 3.11411 3.17689 3.22908 3.98112 3.99415 4.35183 4.61056 4.66992 4.68544 4.87174 5.00695 5.49524 5.63191 5.66598 5.73651 5.78689 5.83769 5.96328 6.08205 6.14916 6.22210 6.34793 6.46673 6.53863 6.99671 7.15306 7.34982 7.41059 7.55519 7.78471 7.81640 8.11127 8.26511 8.46829 8.75614 8.90378 9.13404 10.25964 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.006253 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.881293 B = 4477.052952 C = 5613.304123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.445 4.445 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.147 4.147 11 C -0.127 4.127 12 C -0.215 4.215 13 C -0.179 4.179 14 C 0.012 3.988 15 O -0.307 6.307 16 C 0.077 3.923 17 C -0.105 4.105 18 H 0.101 0.899 19 C -0.120 4.120 20 C 0.073 3.927 21 H 0.081 0.919 22 O -0.563 6.563 23 C -0.160 4.160 24 H 0.278 0.722 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.376 0.624 34 H 0.089 0.911 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.690 -5.928 -5.456 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.475 4.475 8 H 0.100 0.900 9 C 0.094 3.906 10 C -0.166 4.166 11 C -0.146 4.146 12 C -0.234 4.234 13 C -0.198 4.198 14 C -0.032 4.032 15 O -0.221 6.221 16 C 0.000 4.000 17 C -0.123 4.123 18 H 0.120 0.880 19 C -0.158 4.158 20 C 0.015 3.985 21 H 0.099 0.901 22 O -0.368 6.368 23 C -0.197 4.197 24 H 0.089 0.911 25 H 0.141 0.859 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.223 0.777 34 H 0.108 0.892 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.472 -6.008 -5.048 10.836 hybrid contribution 0.237 0.876 -0.431 1.005 sum 7.710 -5.132 -5.479 10.761 Atomic orbital electron populations 1.69855 1.07519 1.28929 1.36180 1.25895 0.94701 1.01225 0.92560 0.86274 0.81061 0.81039 0.78421 1.18417 1.20113 1.19800 1.19435 0.98193 0.90645 1.39218 0.90030 1.17072 0.92530 0.89735 0.91240 1.20873 0.98359 0.97234 1.00174 1.20379 0.99539 0.93275 1.01387 1.20128 1.00403 0.96250 1.06665 1.20618 0.99696 0.95424 1.04048 1.19195 0.91323 0.94470 0.98225 1.85936 1.44846 1.27613 1.63750 1.22394 0.94918 0.86120 0.96519 1.22265 0.97707 0.97623 0.94728 0.88038 1.23053 1.01519 0.97392 0.93792 1.23382 0.97024 0.91300 0.86826 0.90094 1.86514 1.91255 1.42035 1.16985 1.23710 0.99719 1.00236 0.96084 0.91069 0.85879 0.89388 0.89431 0.88845 0.93349 0.93247 0.90680 0.89124 0.77730 0.89209 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 10.96 55.55 0.61 -20.42 16 2 C 0.07 1.87 5.15 -17.33 -0.09 1.78 16 3 Si 0.91 19.13 29.59 -169.99 -5.03 14.10 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.45 -12.22 8.72 -37.84 -0.33 -12.55 16 8 H 0.08 2.22 7.66 -52.49 -0.40 1.82 16 9 C 0.10 2.67 5.58 -106.68 -0.60 2.08 16 10 C -0.15 -3.91 8.64 -39.27 -0.34 -4.24 16 11 C -0.13 -3.08 9.97 -40.00 -0.40 -3.48 16 12 C -0.21 -4.98 10.04 -39.34 -0.39 -5.37 16 13 C -0.18 -4.18 9.04 -39.48 -0.36 -4.54 16 14 C 0.01 0.31 6.72 -38.34 -0.26 0.05 16 15 O -0.31 -7.14 9.43 -18.65 -0.18 -7.32 16 16 C 0.08 1.37 4.58 37.15 0.17 1.54 16 17 C -0.10 -1.51 4.01 -89.81 -0.36 -1.87 16 18 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 19 C -0.12 -1.44 7.47 -25.92 -0.19 -1.63 16 20 C 0.07 0.83 5.21 -25.92 -0.14 0.69 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 22 O -0.56 -6.37 13.67 -35.23 -0.48 -6.85 16 23 C -0.16 -2.15 7.46 -25.92 -0.19 -2.34 16 24 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 25 H 0.12 3.34 6.17 -52.49 -0.32 3.02 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.09 1.92 6.31 -52.49 -0.33 1.58 16 29 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 30 H 0.05 0.88 7.38 -51.93 -0.38 0.49 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.38 2.58 9.12 45.56 0.42 2.99 16 34 H 0.09 1.29 7.90 -51.93 -0.41 0.88 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -30.15 294.83 -8.03 -38.18 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.92 Total: 7.74 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -3.47 Total: -29.88 kcal Atomic # 7 Polarization: -21.03 SS G_CDS: 0.61 Total: -20.42 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.66 Total: -14.17 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.15 -8.03 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218433882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.080 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds