Wall clock time and date at job start Mon Mar 30 2020 18:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47456 * 264.63160 * 3 2 1 5 5 H 1.48503 * 109.46969 * 24.62872 * 3 2 1 6 6 H 1.48496 * 109.47298 * 144.62869 * 3 2 1 7 7 C 1.37873 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 4.79553 * 7 2 1 9 9 C 1.50705 * 120.00349 * 184.79303 * 7 2 1 10 10 H 1.09007 * 109.46615 * 4.93161 * 9 7 2 11 11 O 1.42900 * 109.47227 * 124.93260 * 9 7 2 12 12 C 1.42903 * 113.99889 * 270.00260 * 11 9 7 13 13 C 1.52996 * 109.46839 * 179.97438 * 12 11 9 14 14 H 1.09004 * 113.03874 * 43.02249 * 13 12 11 15 15 C 1.54036 * 113.86474 * 175.00006 * 13 12 11 16 16 C 1.54031 * 85.82351 * 136.72657 * 15 13 12 17 17 O 1.44177 * 113.86734 * 270.86997 * 13 12 11 18 18 C 1.50699 * 109.47242 * 244.93774 * 9 7 2 19 19 C 1.38242 * 119.99706 * 274.86547 * 18 9 7 20 20 C 1.38235 * 119.99756 * 179.79413 * 19 18 9 21 21 C 1.38231 * 119.99816 * 0.42932 * 20 19 18 22 22 C 1.38228 * 120.00651 * 359.82134 * 21 20 19 23 23 C 1.38231 * 120.00342 * 95.13515 * 18 9 7 24 24 H 0.96997 * 120.00314 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47116 * 299.99999 * 12 11 9 26 26 H 1.09002 * 109.47032 * 60.00305 * 12 11 9 27 27 H 1.08993 * 113.81444 * 250.95312 * 15 13 12 28 28 H 1.09002 * 113.81232 * 22.38029 * 15 13 12 29 29 H 1.08998 * 113.86907 * 91.56554 * 16 15 13 30 30 H 1.09005 * 113.86912 * 223.27723 * 16 15 13 31 31 H 1.07998 * 119.99785 * 359.97438 * 19 18 9 32 32 H 1.07997 * 119.99530 * 180.27431 * 20 19 18 33 33 H 1.08005 * 119.99732 * 179.83684 * 21 20 19 34 34 H 1.07995 * 120.00579 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.00010 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6101 1.9809 -1.3939 5 1 1.3944 2.6827 0.5835 6 1 3.4853 1.4756 0.8104 7 6 2.0045 -1.1940 -0.0005 8 1 1.4673 -2.1277 -0.0791 9 6 3.5076 -1.1964 0.1085 10 1 3.8620 -0.1777 0.2661 11 8 3.9039 -2.0146 1.2110 12 6 4.0094 -1.3096 2.4496 13 6 4.4369 -2.2790 3.5533 14 1 5.2281 -2.9602 3.2399 15 6 4.7001 -1.6007 4.9110 16 6 3.9293 -2.7847 5.5247 17 8 3.3348 -2.9278 4.2190 18 6 4.1026 -1.7442 -1.1630 19 6 4.2473 -3.1093 -1.3264 20 6 4.7892 -3.6119 -2.4945 21 6 5.1946 -2.7492 -3.4956 22 6 5.0548 -1.3840 -3.3302 23 6 4.5089 -0.8815 -2.1638 24 1 -0.4850 0.8400 -0.0004 25 1 4.7513 -0.5168 2.3544 26 1 3.0428 -0.8742 2.7033 27 1 5.7532 -1.5690 5.1903 28 1 4.1995 -0.6394 5.0271 29 1 4.5643 -3.6219 5.8142 30 1 3.2220 -2.4951 6.3019 31 1 3.9343 -3.7830 -0.5426 32 1 4.8982 -4.6786 -2.6239 33 1 5.6205 -3.1419 -4.4072 34 1 5.3719 -0.7100 -4.1121 35 1 4.3995 0.1852 -2.0345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224474323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:57 Heat of formation + Delta-G solvation = -31.845673 kcal Electronic energy + Delta-G solvation = -17893.258917 eV Core-core repulsion = 15050.760792 eV Total energy + Delta-G solvation = -2842.498125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.02452 -38.63961 -36.54133 -32.83105 -31.25810 -30.22079 -29.76417 -28.16957 -26.91839 -23.41259 -22.56962 -21.77973 -20.34912 -19.96472 -17.24660 -16.39510 -16.35032 -15.86270 -15.49405 -15.27496 -14.68998 -14.27295 -13.71528 -13.31114 -13.09366 -12.75442 -12.68006 -12.32591 -12.23602 -11.97951 -11.43555 -11.21155 -11.01408 -10.71898 -10.61308 -10.42983 -10.21595 -9.81652 -9.45063 -9.32454 -8.79539 -8.52009 -8.23969 -7.77574 -6.23937 -4.25720 2.07351 2.12044 3.11688 3.17401 3.22039 3.86816 4.21785 4.26591 4.49289 4.66763 5.05965 5.13777 5.34430 5.46154 5.51268 5.54835 5.62032 5.64319 5.73083 5.83614 6.00485 6.06785 6.16840 6.22752 6.30382 6.38116 6.53620 6.70232 6.73382 6.78268 7.11717 7.22490 7.40862 7.45982 7.71922 8.16581 8.45955 8.90551 9.36622 10.88716 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.008590 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.155680 B = 3258.673479 C = 4396.995211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.518 4.518 8 H 0.083 0.917 9 C 0.206 3.794 10 H 0.038 0.962 11 O -0.390 6.390 12 C 0.072 3.928 13 C 0.072 3.928 14 H 0.095 0.905 15 C -0.183 4.183 16 C 0.029 3.971 17 O -0.368 6.368 18 C -0.033 4.033 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.128 4.128 24 H 0.268 0.732 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -1.568 3.970 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.126 4.126 3 Si 0.692 3.308 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.555 4.555 8 H 0.101 0.899 9 C 0.150 3.850 10 H 0.056 0.944 11 O -0.309 6.309 12 C -0.005 4.005 13 C 0.015 3.985 14 H 0.112 0.888 15 C -0.221 4.221 16 C -0.048 4.048 17 O -0.286 6.286 18 C -0.034 4.034 19 C -0.120 4.120 20 C -0.144 4.144 21 C -0.165 4.165 22 C -0.141 4.141 23 C -0.146 4.146 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.273 -1.753 3.851 12.040 hybrid contribution 0.289 1.308 -0.018 1.340 sum 11.562 -0.445 3.833 12.188 Atomic orbital electron populations 1.69888 1.06163 1.27256 1.48574 1.25094 0.94818 0.98747 0.93922 0.87072 0.80224 0.84150 0.79370 1.19349 1.20823 1.18889 1.21294 0.88647 0.95296 1.50261 0.89940 1.19230 0.94560 0.89848 0.81347 0.94406 1.87799 1.89519 1.37718 1.15911 1.22286 1.00363 0.92941 0.84950 1.23477 0.89085 0.93601 0.92371 0.88777 1.24702 1.01667 1.00311 0.95374 1.23751 0.96159 0.96328 0.88540 1.89886 1.38499 1.82435 1.17823 1.20233 0.92692 0.93702 0.96762 1.20969 0.98593 0.95357 0.97075 1.21063 1.00126 0.98912 0.94275 1.20884 1.03084 0.93595 0.98952 1.20916 1.00706 0.95270 0.97201 1.20858 1.00207 0.99223 0.94290 0.92227 0.93469 0.91982 0.90971 0.88675 0.90553 0.89430 0.85908 0.87016 0.87205 0.87014 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.86 20.60 27.33 -169.99 -4.65 15.95 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.26 -5.88 6.20 56.52 0.35 -5.53 16 7 C -0.52 -14.75 9.17 -34.44 -0.32 -15.07 16 8 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.21 5.03 2.25 -29.03 -0.07 4.96 16 10 H 0.04 0.91 4.03 -51.93 -0.21 0.70 16 11 O -0.39 -9.09 9.12 -35.23 -0.32 -9.42 16 12 C 0.07 1.44 5.81 37.16 0.22 1.66 16 13 C 0.07 1.21 4.79 -26.28 -0.13 1.08 16 14 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.18 -2.29 7.93 -25.65 -0.20 -2.49 16 16 C 0.03 0.37 9.21 37.61 0.35 0.72 16 17 O -0.37 -6.83 12.29 -35.23 -0.43 -7.26 16 18 C -0.03 -0.75 4.99 -104.62 -0.52 -1.27 16 19 C -0.10 -2.11 9.35 -39.58 -0.37 -2.48 16 20 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 21 C -0.15 -2.43 10.05 -39.59 -0.40 -2.83 16 22 C -0.12 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.13 -2.61 9.68 -39.58 -0.38 -2.99 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 2.58 7.62 -52.49 -0.40 2.18 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 2.19 8.00 -52.49 -0.42 1.77 16 LS Contribution 299.01 15.07 4.51 4.51 Total: -1.00 -31.79 299.01 -7.70 -39.48 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.86 Total: 4.29 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -2.71 Total: -21.73 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.75 Total: -16.68 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.65 Total: 15.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.79 -7.70 -39.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.637 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds