Wall clock time and date at job start Mon Mar 30 2020 18:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00141 * 2 1 4 4 H 1.48502 * 109.47456 * 264.63160 * 3 2 1 5 5 H 1.48503 * 109.46969 * 24.62872 * 3 2 1 6 6 H 1.48496 * 109.47298 * 144.62869 * 3 2 1 7 7 C 1.37873 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99966 * 4.79553 * 7 2 1 9 9 C 1.50705 * 120.00349 * 184.79303 * 7 2 1 10 10 H 1.09007 * 109.46615 * 4.93161 * 9 7 2 11 11 O 1.42900 * 109.47227 * 124.93260 * 9 7 2 12 12 C 1.42903 * 113.99889 * 270.00260 * 11 9 7 13 13 C 1.52996 * 109.46839 * 179.97438 * 12 11 9 14 14 H 1.09004 * 113.03874 * 43.02249 * 13 12 11 15 15 C 1.54036 * 113.86474 * 175.00006 * 13 12 11 16 16 C 1.54031 * 85.82351 * 136.72657 * 15 13 12 17 17 O 1.44177 * 113.86734 * 270.86997 * 13 12 11 18 18 C 1.50699 * 109.47242 * 244.93774 * 9 7 2 19 19 C 1.38242 * 119.99706 * 274.86547 * 18 9 7 20 20 C 1.38235 * 119.99756 * 179.79413 * 19 18 9 21 21 C 1.38231 * 119.99816 * 0.42932 * 20 19 18 22 22 C 1.38228 * 120.00651 * 359.82134 * 21 20 19 23 23 C 1.38231 * 120.00342 * 95.13515 * 18 9 7 24 24 H 0.96997 * 120.00314 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47116 * 299.99999 * 12 11 9 26 26 H 1.09002 * 109.47032 * 60.00305 * 12 11 9 27 27 H 1.08993 * 113.81444 * 250.95312 * 15 13 12 28 28 H 1.09002 * 113.81232 * 22.38029 * 15 13 12 29 29 H 1.08998 * 113.86907 * 91.56554 * 16 15 13 30 30 H 1.09005 * 113.86912 * 223.27723 * 16 15 13 31 31 H 1.07998 * 119.99785 * 359.97438 * 19 18 9 32 32 H 1.07997 * 119.99530 * 180.27431 * 20 19 18 33 33 H 1.08005 * 119.99732 * 179.83684 * 21 20 19 34 34 H 1.07995 * 120.00579 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.00010 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6101 1.9809 -1.3939 5 1 1.3944 2.6827 0.5835 6 1 3.4853 1.4756 0.8104 7 6 2.0045 -1.1940 -0.0005 8 1 1.4673 -2.1277 -0.0791 9 6 3.5076 -1.1964 0.1085 10 1 3.8620 -0.1777 0.2661 11 8 3.9039 -2.0146 1.2110 12 6 4.0094 -1.3096 2.4496 13 6 4.4369 -2.2790 3.5533 14 1 5.2281 -2.9602 3.2399 15 6 4.7001 -1.6007 4.9110 16 6 3.9293 -2.7847 5.5247 17 8 3.3348 -2.9278 4.2190 18 6 4.1026 -1.7442 -1.1630 19 6 4.2473 -3.1093 -1.3264 20 6 4.7892 -3.6119 -2.4945 21 6 5.1946 -2.7492 -3.4956 22 6 5.0548 -1.3840 -3.3302 23 6 4.5089 -0.8815 -2.1638 24 1 -0.4850 0.8400 -0.0004 25 1 4.7513 -0.5168 2.3544 26 1 3.0428 -0.8742 2.7033 27 1 5.7532 -1.5690 5.1903 28 1 4.1995 -0.6394 5.0271 29 1 4.5643 -3.6219 5.8142 30 1 3.2220 -2.4951 6.3019 31 1 3.9343 -3.7830 -0.5426 32 1 4.8982 -4.6786 -2.6239 33 1 5.6205 -3.1419 -4.4072 34 1 5.3719 -0.7100 -4.1121 35 1 4.3995 0.1852 -2.0345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224474323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:56 Heat of formation + Delta-G solvation = -53.179483 kcal Electronic energy + Delta-G solvation = -17894.184020 eV Core-core repulsion = 15050.760792 eV Total energy + Delta-G solvation = -2843.423228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26386 -40.18218 -38.24918 -34.91039 -32.95089 -31.67674 -31.07643 -29.52295 -28.77805 -24.96968 -24.17130 -23.23151 -21.87251 -21.27079 -19.35449 -17.83577 -17.79936 -17.39349 -16.78677 -16.71357 -16.41162 -15.80813 -15.23353 -15.07297 -14.71002 -14.56611 -14.15241 -13.86210 -13.46988 -13.37584 -13.05399 -12.91330 -12.58717 -12.22339 -12.05311 -11.92491 -11.81273 -11.47428 -11.20503 -10.92962 -10.62765 -10.29386 -9.70289 -9.40506 -8.42942 -6.52137 0.60050 0.64183 1.20859 1.25758 1.33801 2.19616 2.64915 2.77654 3.05936 3.09421 3.40167 3.98738 4.05834 4.10997 4.23514 4.25918 4.33975 4.38164 4.39091 4.47749 4.59685 4.70900 4.77827 4.85056 4.89501 5.00307 5.21360 5.24813 5.29074 5.35620 5.41153 5.68339 5.72849 5.88465 6.05257 6.25727 6.49262 6.65794 7.16732 8.74470 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.008590 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.155680 B = 3258.673479 C = 4396.995211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.020 3.980 3 Si 0.932 3.068 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.530 4.530 8 H 0.022 0.978 9 C 0.214 3.786 10 H 0.044 0.956 11 O -0.404 6.404 12 C 0.063 3.937 13 C 0.062 3.938 14 H 0.106 0.894 15 C -0.162 4.162 16 C 0.028 3.972 17 O -0.420 6.420 18 C -0.070 4.070 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.118 4.118 23 C -0.144 4.144 24 H 0.271 0.729 25 H 0.072 0.928 26 H 0.028 0.972 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.014 -0.698 3.240 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.173 1.173 5 H -0.202 1.202 6 H -0.165 1.165 7 C -0.568 4.568 8 H 0.041 0.959 9 C 0.158 3.842 10 H 0.061 0.939 11 O -0.324 6.324 12 C -0.014 4.014 13 C 0.005 3.995 14 H 0.124 0.876 15 C -0.199 4.199 16 C -0.048 4.048 17 O -0.341 6.341 18 C -0.071 4.071 19 C -0.143 4.143 20 C -0.140 4.140 21 C -0.152 4.152 22 C -0.135 4.135 23 C -0.163 4.163 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.642 -0.902 3.133 15.001 hybrid contribution -0.761 0.862 0.194 1.166 sum 13.881 -0.040 3.328 14.275 Atomic orbital electron populations 1.70055 1.08306 1.28603 1.50502 1.26037 0.95671 1.03086 0.93083 0.86001 0.79526 0.78335 0.80786 1.17297 1.20167 1.16460 1.21408 0.91320 0.93255 1.50805 0.95941 1.19043 0.91837 0.90505 0.82818 0.93889 1.87774 1.89202 1.38519 1.16943 1.22567 0.99415 0.94661 0.84725 1.23616 0.88831 0.94033 0.93060 0.87644 1.24557 1.03919 0.99821 0.91625 1.24108 0.96583 0.97475 0.86651 1.89846 1.40264 1.82938 1.21014 1.20220 0.95351 0.94917 0.96566 1.20970 1.00275 0.94700 0.98403 1.21410 0.98633 1.00932 0.93064 1.21415 1.00971 0.93065 0.99727 1.21368 0.98943 0.96537 0.96676 1.21046 1.01013 0.99188 0.95019 0.91954 0.91026 0.95345 0.87307 0.88662 0.87887 0.88013 0.88006 0.83954 0.82750 0.83225 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.52 13.96 21.45 0.30 -59.23 16 2 C 0.02 1.21 5.47 84.65 0.46 1.68 16 3 Si 0.93 42.95 27.33 68.60 1.87 44.82 16 4 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.24 -10.07 6.20 99.48 0.62 -9.45 16 7 C -0.53 -32.30 9.17 25.60 0.23 -32.07 16 8 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 9 C 0.21 10.86 2.25 29.10 0.07 10.92 16 10 H 0.04 2.09 4.03 -2.38 -0.01 2.08 16 11 O -0.40 -19.81 9.12 -148.98 -1.36 -21.17 16 12 C 0.06 2.60 5.81 71.98 0.42 3.02 16 13 C 0.06 2.06 4.79 30.89 0.15 2.21 16 14 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 15 C -0.16 -3.69 7.93 31.29 0.25 -3.44 16 16 C 0.03 0.66 9.21 72.27 0.67 1.32 16 17 O -0.42 -15.98 12.29 -148.98 -1.83 -17.81 16 18 C -0.07 -3.21 4.99 -19.87 -0.10 -3.30 16 19 C -0.13 -5.30 9.35 22.27 0.21 -5.09 16 20 C -0.12 -4.05 10.05 22.27 0.22 -3.83 16 21 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 22 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 23 C -0.14 -5.70 9.68 22.27 0.22 -5.49 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.07 2.54 8.08 -2.39 -0.02 2.52 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.10 4.59 7.62 -2.91 -0.02 4.57 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 33 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.11 4.27 8.00 -2.91 -0.02 4.25 16 Total: -1.00 -76.13 299.01 3.20 -72.92 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.98 Total: 21.61 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.24 Total: -41.16 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.30 Total: -59.23 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -3.19 Total: -38.98 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.87 Total: 44.82 kcal Total: -76.13 3.20 -72.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.745 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds