Wall clock time and date at job start Mon Mar 30 2020 18:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48503 * 109.46800 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47028 * 300.00087 * 3 2 1 6 6 H 1.48500 * 109.47343 * 60.00574 * 3 2 1 7 7 C 1.37875 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99887 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46996 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47313 * 60.00197 * 9 7 2 12 12 C 1.42900 * 114.00219 * 90.00010 * 11 9 7 13 13 C 1.52995 * 109.46974 * 180.02562 * 12 11 9 14 14 H 1.09001 * 113.03894 * 43.01965 * 13 12 11 15 15 C 1.54033 * 113.86373 * 175.00090 * 13 12 11 16 16 C 1.54032 * 85.82647 * 136.72265 * 15 13 12 17 17 O 1.44180 * 85.51549 * 337.42012 * 16 15 13 18 18 C 1.50702 * 109.46887 * 299.99692 * 9 7 2 19 19 C 1.38234 * 120.00257 * 265.00218 * 18 9 7 20 20 C 1.38230 * 119.99864 * 179.97438 * 19 18 9 21 21 C 1.38235 * 120.00326 * 0.02562 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99519 * 84.98148 * 18 9 7 24 24 H 0.97003 * 120.00157 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46858 * 299.99906 * 12 11 9 26 26 H 1.08996 * 109.47199 * 60.00192 * 12 11 9 27 27 H 1.09006 * 113.82154 * 250.95106 * 15 13 12 28 28 H 1.09004 * 113.81669 * 22.37410 * 15 13 12 29 29 H 1.08996 * 113.86185 * 91.56526 * 16 15 13 30 30 H 1.09001 * 113.86980 * 223.27054 * 16 15 13 31 31 H 1.08002 * 119.99744 * 359.97438 * 19 18 9 32 32 H 1.08000 * 120.00356 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.00616 * 179.70664 * 21 20 19 34 34 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.00203 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 1.0734 -3.1705 -2.2947 13 6 0.1057 -3.1981 -3.4793 14 1 -0.4549 -2.2704 -3.5939 15 6 0.7367 -3.7106 -4.7877 16 6 -0.5645 -4.5148 -4.9683 17 8 -0.7088 -4.3863 -3.5395 18 6 0.3851 -2.5792 1.2303 19 6 0.8485 -3.2263 2.3605 20 6 0.0544 -3.2993 3.4896 21 6 -1.2033 -2.7255 3.4885 22 6 -1.6667 -2.0784 2.3583 23 6 -0.8724 -2.0051 1.2292 24 1 -0.4850 0.8401 0.0004 25 1 1.9550 -2.5868 -2.5597 26 1 1.3730 -4.1885 -2.0460 27 1 0.8827 -2.9349 -5.5394 28 1 1.6214 -4.3292 -4.6368 29 1 -1.3316 -3.9903 -5.5380 30 1 -0.4067 -5.5393 -5.3053 31 1 1.8309 -3.6749 2.3613 32 1 0.4162 -3.8052 4.3726 33 1 -1.8256 -2.7866 4.3690 34 1 -2.6494 -1.6305 2.3571 35 1 -1.2342 -1.4988 0.3464 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224474324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:00 Heat of formation + Delta-G solvation = -24.909899 kcal Electronic energy + Delta-G solvation = -18113.070194 eV Core-core repulsion = 15270.872827 eV Total energy + Delta-G solvation = -2842.197367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92628 -38.17709 -36.14378 -32.82976 -30.59122 -29.72896 -29.47852 -27.96363 -26.54356 -23.26097 -22.51510 -21.24684 -20.25489 -19.87172 -16.80845 -16.08395 -15.95023 -15.74769 -15.34974 -14.87193 -14.56731 -13.90956 -13.50010 -13.20623 -12.92745 -12.29306 -12.25095 -12.02906 -11.86605 -11.47808 -11.07027 -11.01022 -10.75600 -10.73631 -10.40476 -10.21047 -10.00302 -9.69477 -9.35067 -9.15218 -8.72609 -8.07854 -7.68313 -7.37713 -5.93295 -4.27552 2.54521 2.70063 3.23467 3.31964 3.34604 3.96683 4.33426 4.45045 4.83591 5.09754 5.15934 5.25255 5.46724 5.63102 5.75136 5.81584 5.88021 5.98087 6.02950 6.12515 6.18284 6.35293 6.42908 6.49317 6.65340 6.79462 6.88441 6.97089 7.18800 7.36481 7.57887 7.66755 7.90241 8.08584 8.12542 8.37396 8.56675 8.97111 9.48022 10.90731 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.008688 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.359182 B = 3222.100986 C = 4391.189110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.245 3.755 10 H 0.017 0.983 11 O -0.365 6.365 12 C 0.074 3.926 13 C 0.076 3.924 14 H 0.098 0.902 15 C -0.183 4.183 16 C 0.030 3.970 17 O -0.377 6.377 18 C -0.041 4.041 19 C -0.130 4.130 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.154 4.154 23 C -0.042 4.042 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.258 -5.179 -4.973 7.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.189 3.811 10 H 0.035 0.965 11 O -0.285 6.285 12 C -0.004 4.004 13 C 0.018 3.982 14 H 0.116 0.884 15 C -0.221 4.221 16 C -0.047 4.047 17 O -0.296 6.296 18 C -0.041 4.041 19 C -0.148 4.148 20 C -0.169 4.169 21 C -0.165 4.165 22 C -0.173 4.173 23 C -0.061 4.061 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.729 -5.130 -4.780 7.050 hybrid contribution 0.896 1.107 0.094 1.427 sum 0.167 -4.023 -4.686 6.178 Atomic orbital electron populations 1.69857 1.05774 1.25791 1.46733 1.24995 0.94756 0.99084 0.93369 0.86584 0.80235 0.83702 0.77730 1.19747 1.20794 1.20836 1.21480 0.92932 0.90883 1.52908 0.92137 1.18554 0.86969 0.94572 0.80996 0.96543 1.88038 1.40172 1.80800 1.19456 1.22185 0.94203 0.96287 0.87694 1.23520 0.91081 0.89705 0.93877 0.88381 1.24697 0.99214 1.00206 0.97977 1.23731 0.95788 1.00627 0.84568 1.89798 1.74645 1.43842 1.21337 1.19999 0.94391 0.94269 0.95467 1.20784 0.98959 1.01270 0.93832 1.20686 0.95407 1.03123 0.97650 1.20808 0.96404 1.01407 0.97862 1.21151 0.99651 1.01728 0.94731 1.21840 0.92749 0.92319 0.99203 0.92848 0.92493 0.94668 0.90985 0.88958 0.90610 0.89706 0.87878 0.88055 0.88317 0.88061 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.79 8.53 55.43 0.47 -22.32 16 2 C 0.08 2.23 5.24 -17.82 -0.09 2.13 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.55 -14.57 8.89 -34.44 -0.31 -14.88 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.24 6.19 2.59 -29.03 -0.08 6.11 16 10 H 0.02 0.40 7.70 -51.92 -0.40 0.00 16 11 O -0.37 -9.11 8.52 -35.23 -0.30 -9.41 16 12 C 0.07 1.51 5.81 37.15 0.22 1.73 16 13 C 0.08 1.34 4.79 -26.28 -0.13 1.21 16 14 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 15 C -0.18 -2.40 7.93 -25.65 -0.20 -2.60 16 16 C 0.03 0.39 9.21 37.61 0.35 0.73 16 17 O -0.38 -6.93 12.29 -35.23 -0.43 -7.36 16 18 C -0.04 -1.01 4.80 -104.62 -0.50 -1.51 16 19 C -0.13 -2.91 9.68 -39.59 -0.38 -3.29 16 20 C -0.15 -3.05 10.05 -39.59 -0.40 -3.44 16 21 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 22 C -0.15 -3.38 10.05 -39.58 -0.40 -3.78 16 23 C -0.04 -1.05 7.46 -39.58 -0.30 -1.34 16 24 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.16 4.35 5.52 -52.48 -0.29 4.06 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -29.31 295.21 -8.33 -37.64 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.88 Total: 3.65 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.62 Total: -22.28 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.47 Total: -22.32 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.73 Total: -16.77 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.31 -8.33 -37.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.726 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds