Wall clock time and date at job start Mon Mar 30 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99977 * 2 1 4 4 H 1.48503 * 109.46800 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47028 * 300.00087 * 3 2 1 6 6 H 1.48500 * 109.47343 * 60.00574 * 3 2 1 7 7 C 1.37875 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99887 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46996 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47313 * 60.00197 * 9 7 2 12 12 C 1.42900 * 114.00219 * 90.00010 * 11 9 7 13 13 C 1.52995 * 109.46974 * 180.02562 * 12 11 9 14 14 H 1.09001 * 113.03894 * 43.01965 * 13 12 11 15 15 C 1.54033 * 113.86373 * 175.00090 * 13 12 11 16 16 C 1.54032 * 85.82647 * 136.72265 * 15 13 12 17 17 O 1.44180 * 85.51549 * 337.42012 * 16 15 13 18 18 C 1.50702 * 109.46887 * 299.99692 * 9 7 2 19 19 C 1.38234 * 120.00257 * 265.00218 * 18 9 7 20 20 C 1.38230 * 119.99864 * 179.97438 * 19 18 9 21 21 C 1.38235 * 120.00326 * 0.02562 * 20 19 18 22 22 C 1.38234 * 119.99814 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99519 * 84.98148 * 18 9 7 24 24 H 0.97003 * 120.00157 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46858 * 299.99906 * 12 11 9 26 26 H 1.08996 * 109.47199 * 60.00192 * 12 11 9 27 27 H 1.09006 * 113.82154 * 250.95106 * 15 13 12 28 28 H 1.09004 * 113.81669 * 22.37410 * 15 13 12 29 29 H 1.08996 * 113.86185 * 91.56526 * 16 15 13 30 30 H 1.09001 * 113.86980 * 223.27054 * 16 15 13 31 31 H 1.08002 * 119.99744 * 359.97438 * 19 18 9 32 32 H 1.08000 * 120.00356 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.00616 * 179.70664 * 21 20 19 34 34 H 1.08001 * 120.00299 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.00203 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 1.9593 -3.3277 -0.0005 11 8 0.4290 -2.5746 -1.1670 12 6 1.0734 -3.1705 -2.2947 13 6 0.1057 -3.1981 -3.4793 14 1 -0.4549 -2.2704 -3.5939 15 6 0.7367 -3.7106 -4.7877 16 6 -0.5645 -4.5148 -4.9683 17 8 -0.7088 -4.3863 -3.5395 18 6 0.3851 -2.5792 1.2303 19 6 0.8485 -3.2263 2.3605 20 6 0.0544 -3.2993 3.4896 21 6 -1.2033 -2.7255 3.4885 22 6 -1.6667 -2.0784 2.3583 23 6 -0.8724 -2.0051 1.2292 24 1 -0.4850 0.8401 0.0004 25 1 1.9550 -2.5868 -2.5597 26 1 1.3730 -4.1885 -2.0460 27 1 0.8827 -2.9349 -5.5394 28 1 1.6214 -4.3292 -4.6368 29 1 -1.3316 -3.9903 -5.5380 30 1 -0.4067 -5.5393 -5.3053 31 1 1.8309 -3.6749 2.3613 32 1 0.4162 -3.8052 4.3726 33 1 -1.8256 -2.7866 4.3690 34 1 -2.6494 -1.6305 2.3571 35 1 -1.2342 -1.4988 0.3464 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224474324.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:59 Heat of formation + Delta-G solvation = -41.965339 kcal Electronic energy + Delta-G solvation = -18113.809773 eV Core-core repulsion = 15270.872827 eV Total energy + Delta-G solvation = -2842.936946 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20183 -39.91483 -37.92382 -34.76238 -32.35588 -31.34813 -30.93069 -29.36958 -28.40848 -24.91367 -24.11975 -22.93660 -21.91115 -21.23369 -18.71223 -17.57594 -17.43749 -17.30724 -16.77676 -16.49116 -16.34918 -15.57484 -15.25715 -14.90265 -14.57481 -13.96233 -13.73598 -13.44818 -13.34051 -13.22883 -12.85885 -12.69905 -12.61482 -12.21872 -11.89074 -11.85242 -11.50115 -11.41551 -11.09049 -10.70352 -10.58222 -9.91896 -9.41640 -9.16612 -7.89771 -6.33435 0.81931 0.99599 1.38595 1.41226 1.50756 2.39953 2.75711 3.02402 3.27341 3.35139 3.54277 4.08714 4.16354 4.32905 4.37445 4.41281 4.45589 4.53256 4.58769 4.64851 4.73769 4.83077 4.89871 5.06652 5.13027 5.21460 5.29082 5.40677 5.46988 5.62963 5.68398 5.87726 6.04822 6.15682 6.35551 6.53415 6.64190 7.08453 7.45373 8.90497 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.008688 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.359182 B = 3222.100986 C = 4391.189110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.043 3.957 3 Si 0.949 3.051 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.566 4.566 8 H 0.053 0.947 9 C 0.243 3.757 10 H 0.014 0.986 11 O -0.389 6.389 12 C 0.069 3.931 13 C 0.064 3.936 14 H 0.083 0.917 15 C -0.163 4.163 16 C 0.031 3.969 17 O -0.415 6.415 18 C -0.072 4.072 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.067 4.067 24 H 0.259 0.741 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 -5.617 -4.621 7.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.209 1.209 7 C -0.603 4.603 8 H 0.072 0.928 9 C 0.187 3.813 10 H 0.032 0.968 11 O -0.309 6.309 12 C -0.008 4.008 13 C 0.006 3.994 14 H 0.101 0.899 15 C -0.200 4.200 16 C -0.045 4.045 17 O -0.335 6.335 18 C -0.072 4.072 19 C -0.162 4.162 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.180 4.180 23 C -0.086 4.086 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.640 -5.582 -4.444 7.163 hybrid contribution 0.818 1.152 -0.006 1.413 sum 0.178 -4.430 -4.450 6.282 Atomic orbital electron populations 1.70069 1.06628 1.26104 1.46819 1.25645 0.95574 1.01738 0.93199 0.85678 0.79165 0.80124 0.77614 1.19401 1.20246 1.20904 1.21662 0.92740 0.92124 1.53808 0.92837 1.18539 0.87172 0.93863 0.81727 0.96839 1.87999 1.41031 1.81422 1.20465 1.22387 0.95008 0.95929 0.87470 1.23486 0.91459 0.89345 0.95103 0.89932 1.24573 0.99609 1.00576 0.95262 1.24076 0.95998 1.02532 0.81900 1.89757 1.74945 1.43747 1.25039 1.20164 0.94855 0.95985 0.96215 1.21055 1.00003 1.01241 0.93919 1.21143 0.94997 1.02057 0.97997 1.21248 0.96728 0.99569 0.98312 1.21401 1.00198 1.01913 0.94533 1.21645 0.93617 0.93747 0.99570 0.93072 0.92627 0.94457 0.88637 0.87834 0.88817 0.87086 0.86654 0.84128 0.84296 0.86239 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.81 8.53 21.45 0.18 -47.63 16 2 C 0.04 2.31 5.24 84.65 0.44 2.75 16 3 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.57 -31.20 8.89 25.60 0.23 -30.97 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.24 12.76 2.59 29.10 0.08 12.84 16 10 H 0.01 0.69 7.70 -2.38 -0.02 0.67 16 11 O -0.39 -20.37 8.52 -148.98 -1.27 -21.64 16 12 C 0.07 2.94 5.81 71.98 0.42 3.36 16 13 C 0.06 2.30 4.79 30.88 0.15 2.45 16 14 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 15 C -0.16 -3.98 7.93 31.29 0.25 -3.74 16 16 C 0.03 0.74 9.21 72.27 0.67 1.40 16 17 O -0.41 -15.28 12.29 -148.98 -1.83 -17.11 16 18 C -0.07 -3.65 4.80 -19.87 -0.10 -3.74 16 19 C -0.14 -6.35 9.68 22.27 0.22 -6.14 16 20 C -0.14 -5.44 10.05 22.27 0.22 -5.21 16 21 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 22 C -0.16 -6.98 10.05 22.27 0.22 -6.75 16 23 C -0.07 -3.39 7.46 22.27 0.17 -3.23 16 24 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 25 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 26 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 27 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.10 2.31 8.10 -2.38 -0.02 2.29 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 35 H 0.13 7.55 5.52 -2.91 -0.02 7.54 16 Total: -1.00 -65.09 295.21 3.36 -61.73 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.06 Total: 21.65 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 3.18 Total: -42.02 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.18 Total: -47.63 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -3.10 Total: -38.75 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.09 3.36 -61.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474324.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.767 kcal (2) G-P(sol) polarization free energy of solvation -65.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds