Wall clock time and date at job start Mon Mar 30 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 119.99927 * 2 1 4 4 H 1.48495 * 109.47222 * 269.72578 * 3 2 1 5 5 H 1.48504 * 109.47528 * 29.72762 * 3 2 1 6 6 H 1.48507 * 109.46993 * 149.72552 * 3 2 1 7 7 C 1.37876 * 119.99410 * 179.72668 * 2 1 3 8 8 H 1.08004 * 119.99640 * 174.22503 * 7 2 1 9 9 C 1.50698 * 120.00457 * 354.21658 * 7 2 1 10 10 H 1.09001 * 109.47097 * 31.98045 * 9 7 2 11 11 O 1.42901 * 109.47123 * 151.98352 * 9 7 2 12 12 C 1.42905 * 113.99587 * 270.00081 * 11 9 7 13 13 C 1.53002 * 109.46853 * 179.97438 * 12 11 9 14 14 H 1.09003 * 112.67906 * 314.67085 * 13 12 11 15 15 C 1.53357 * 113.39224 * 184.15626 * 13 12 11 16 16 C 1.53453 * 81.23477 * 218.62898 * 15 13 12 17 17 O 1.43352 * 113.39023 * 85.17992 * 13 12 11 18 18 C 1.50703 * 109.47130 * 271.98408 * 9 7 2 19 19 C 1.38234 * 119.99755 * 278.49817 * 18 9 7 20 20 C 1.38239 * 119.99645 * 179.76683 * 19 18 9 21 21 C 1.38232 * 120.00184 * 0.51245 * 20 19 18 22 22 C 1.38242 * 119.99617 * 359.74228 * 21 20 19 23 23 C 1.38230 * 120.00395 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00182 * 184.93661 * 1 2 3 25 25 H 1.08991 * 109.47226 * 299.99859 * 12 11 9 26 26 H 1.08994 * 109.47034 * 60.00254 * 12 11 9 27 27 H 1.09003 * 114.56741 * 331.70749 * 15 13 12 28 28 H 1.09002 * 114.57364 * 105.52426 * 15 13 12 29 29 H 1.09002 * 113.35143 * 271.55293 * 16 15 13 30 30 H 1.08998 * 113.47234 * 141.36170 * 16 15 13 31 31 H 1.07995 * 120.00259 * 0.02562 * 19 18 9 32 32 H 1.07998 * 119.99824 * 180.23235 * 20 19 18 33 33 H 1.08000 * 120.00280 * 179.72155 * 21 20 19 34 34 H 1.08002 * 119.99603 * 179.97438 * 22 21 20 35 35 H 1.07995 * 120.00132 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5024 2.0430 -1.4000 5 1 1.4437 2.6543 0.6943 6 1 3.5438 1.4418 0.7059 7 6 2.0045 -1.1941 0.0057 8 1 3.0804 -1.1970 -0.0884 9 6 1.2567 -2.4952 0.1434 10 1 0.2759 -2.4017 -0.3229 11 8 1.9925 -3.5379 -0.4996 12 6 1.6615 -3.7178 -1.8781 13 6 2.5056 -4.8529 -2.4613 14 1 3.5555 -4.7849 -2.1764 15 6 2.2950 -5.0568 -3.9666 16 6 2.4108 -6.5278 -3.5452 17 8 1.9400 -6.1521 -2.2444 18 6 1.0889 -2.8260 1.6041 19 6 2.1238 -3.4206 2.3014 20 6 1.9715 -3.7196 3.6424 21 6 0.7807 -3.4337 4.2835 22 6 -0.2561 -2.8438 3.5848 23 6 -0.1022 -2.5404 2.2450 24 1 -0.4850 -0.8369 0.0723 25 1 0.6043 -3.9675 -1.9683 26 1 1.8651 -2.7967 -2.4239 27 1 1.3094 -4.7658 -4.3298 28 1 3.1130 -4.6982 -4.5914 29 1 3.4363 -6.8975 -3.5442 30 1 1.7268 -7.1875 -4.0791 31 1 3.0527 -3.6477 1.7996 32 1 2.7814 -4.1807 4.1882 33 1 0.6601 -3.6714 5.3301 34 1 -1.1867 -2.6208 4.0855 35 1 -0.9123 -2.0800 1.6991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224474325.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:02 Heat of formation + Delta-G solvation = -56.159288 kcal Electronic energy + Delta-G solvation = -17888.769285 eV Core-core repulsion = 15045.216843 eV Total energy + Delta-G solvation = -2843.552442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71506 -40.24577 -38.30992 -35.25392 -32.51566 -31.69776 -31.30291 -29.49120 -27.94678 -25.14277 -24.18900 -23.21498 -22.19036 -21.58259 -19.25482 -17.86185 -17.69380 -17.59121 -16.87647 -16.62411 -15.87992 -15.84207 -15.60273 -15.20988 -14.68305 -14.25378 -14.09154 -13.78564 -13.64156 -13.45613 -12.97399 -12.70198 -12.36137 -12.05145 -11.99249 -11.90016 -11.72699 -11.59932 -11.55185 -10.77272 -10.65275 -10.24584 -9.74284 -9.42704 -8.69645 -6.46956 0.57360 0.61027 1.48290 1.57463 1.75675 2.47385 2.76447 2.93050 3.02740 3.14237 3.28667 3.94989 4.01192 4.08722 4.19459 4.26187 4.28168 4.32989 4.37185 4.48068 4.56479 4.67393 4.79244 4.80595 4.88064 4.90400 5.16012 5.20335 5.20597 5.25908 5.63912 5.67503 5.77295 5.90155 5.93803 6.22753 6.44883 6.57504 7.34110 8.63547 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.008339 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.613498 B = 3356.850759 C = 4745.575729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.017 4.017 3 Si 1.114 2.886 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.048 0.952 9 C 0.234 3.766 10 H 0.002 0.998 11 O -0.403 6.403 12 C 0.069 3.931 13 C 0.060 3.940 14 H 0.099 0.901 15 C -0.165 4.165 16 C 0.027 3.973 17 O -0.403 6.403 18 C -0.070 4.070 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.143 4.143 24 H 0.260 0.740 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -8.605 -2.041 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.654 4.654 8 H 0.066 0.934 9 C 0.177 3.823 10 H 0.020 0.980 11 O -0.323 6.323 12 C -0.008 4.008 13 C 0.002 3.998 14 H 0.117 0.883 15 C -0.202 4.202 16 C -0.049 4.049 17 O -0.323 6.323 18 C -0.071 4.071 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.160 0.840 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.858 -7.231 -1.805 8.393 hybrid contribution -0.247 -1.236 -0.308 1.298 sum 3.612 -8.468 -2.113 9.445 Atomic orbital electron populations 1.70910 1.07552 1.30441 1.46824 1.27241 0.96525 1.05985 0.91937 0.82976 0.74162 0.71259 0.78061 1.19271 1.20542 1.20043 1.22466 0.95114 0.92503 1.55280 0.93412 1.18675 0.90840 0.85772 0.86976 0.97985 1.87695 1.65450 1.56082 1.23100 1.22572 0.97361 0.97234 0.83621 1.23423 0.97619 0.82923 0.95809 0.88342 1.24335 1.05152 0.96695 0.94009 1.23784 1.01707 0.96903 0.82551 1.89954 1.75257 1.28467 1.38621 1.20416 0.94007 0.95454 0.97202 1.20940 0.98241 0.99696 0.95203 1.21430 0.98845 1.00199 0.93600 1.21390 0.92922 1.00035 1.00979 1.21332 1.00424 0.99191 0.93127 1.21001 0.96753 1.01870 0.96555 0.92906 0.95024 0.92585 0.88139 0.87126 0.88244 0.87713 0.87516 0.83446 0.82614 0.83983 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.63 21.45 0.29 -54.69 16 2 C -0.02 -0.96 5.45 84.65 0.46 -0.49 16 3 Si 1.11 50.24 29.91 68.60 2.05 52.29 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.62 -35.53 8.62 25.60 0.22 -35.30 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 9 C 0.23 12.75 2.17 29.10 0.06 12.82 16 10 H 0.00 0.14 5.98 -2.39 -0.01 0.13 16 11 O -0.40 -20.50 9.24 -148.98 -1.38 -21.88 16 12 C 0.07 2.95 5.78 71.98 0.42 3.36 16 13 C 0.06 1.99 4.37 22.45 0.10 2.09 16 14 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 15 C -0.16 -3.75 8.20 30.87 0.25 -3.50 16 16 C 0.03 0.59 8.74 63.87 0.56 1.15 16 17 O -0.40 -14.09 12.56 -148.98 -1.87 -15.96 16 18 C -0.07 -3.54 4.96 -19.86 -0.10 -3.64 16 19 C -0.12 -5.52 9.36 22.27 0.21 -5.32 16 20 C -0.12 -4.41 10.05 22.27 0.22 -4.18 16 21 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 22 C -0.12 -4.59 10.05 22.27 0.22 -4.36 16 23 C -0.14 -6.70 9.52 22.27 0.21 -6.48 16 24 H 0.26 15.67 5.30 -92.71 -0.49 15.18 16 25 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 26 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.10 2.26 8.13 -2.39 -0.02 2.24 16 28 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 4.89 7.73 -2.91 -0.02 4.87 16 32 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 33 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.10 4.77 6.95 -2.91 -0.02 4.75 16 Total: -1.00 -70.82 298.86 3.50 -67.32 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.34 Total: 21.02 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 3.06 Total: -48.10 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.29 Total: -54.69 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -3.25 Total: -37.84 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -70.82 3.50 -67.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474325.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.160 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds