Wall clock time and date at job start Mon Mar 30 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47425 * 239.99780 * 3 2 1 5 5 H 1.48499 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47130 * 120.00260 * 3 2 1 7 7 C 1.37878 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99738 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47002 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46964 * 60.00402 * 9 7 2 12 12 C 1.42898 * 114.00186 * 89.99616 * 11 9 7 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 9 14 14 H 1.09008 * 112.68437 * 314.67052 * 13 12 11 15 15 C 1.53366 * 113.39627 * 184.15600 * 13 12 11 16 16 C 1.53452 * 81.23388 * 218.63066 * 15 13 12 17 17 O 1.43348 * 113.39306 * 85.18029 * 13 12 11 18 18 C 1.50698 * 109.47381 * 300.00319 * 9 7 2 19 19 C 1.38234 * 119.99817 * 84.72442 * 18 9 7 20 20 C 1.38241 * 119.99867 * 179.79059 * 19 18 9 21 21 C 1.38236 * 119.99498 * 0.43669 * 20 19 18 22 22 C 1.38228 * 120.00366 * 359.81717 * 21 20 19 23 23 C 1.38230 * 119.99942 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 12 11 9 26 26 H 1.09001 * 109.47074 * 60.00315 * 12 11 9 27 27 H 1.09005 * 114.56457 * 331.70730 * 15 13 12 28 28 H 1.09000 * 114.56495 * 105.51927 * 15 13 12 29 29 H 1.09002 * 113.34879 * 271.55446 * 16 15 13 30 30 H 1.08996 * 113.46604 * 141.36419 * 16 15 13 31 31 H 1.08003 * 120.00165 * 359.97438 * 19 18 9 32 32 H 1.08000 * 120.00087 * 180.27996 * 20 19 18 33 33 H 1.08009 * 119.99511 * 179.83697 * 21 20 19 34 34 H 1.08001 * 120.00373 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.00070 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 1.9593 -3.3276 -0.0015 11 8 0.4291 -2.5746 -1.1671 12 6 1.0737 -3.1703 -2.2947 13 6 0.1060 -3.1980 -3.4795 14 1 -0.8904 -3.5411 -3.2007 15 6 0.6731 -3.9126 -4.7124 16 6 -0.0621 -2.7683 -5.4229 17 8 0.0976 -1.9804 -4.2360 18 6 0.3850 -2.5793 1.2302 19 6 -0.8704 -2.0007 1.2307 20 6 -1.6665 -2.0779 2.3582 21 6 -1.2035 -2.7260 3.4881 22 6 0.0540 -3.3000 3.4892 23 6 0.8483 -3.2265 2.3604 24 1 -0.4850 0.8400 0.0004 25 1 1.9553 -2.5866 -2.5597 26 1 1.3732 -4.1884 -2.0461 27 1 1.7591 -3.8757 -4.7980 28 1 0.2550 -4.9026 -4.8945 29 1 -1.1023 -2.9995 -5.6520 30 1 0.4794 -2.3716 -6.2817 31 1 -1.2304 -1.4909 0.3493 32 1 -2.6492 -1.6298 2.3572 33 1 -1.8245 -2.7841 4.3699 34 1 0.4159 -3.8059 4.3721 35 1 1.8306 -3.6753 2.3611 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224474326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:05 Heat of formation + Delta-G solvation = -20.731840 kcal Electronic energy + Delta-G solvation = -18180.967624 eV Core-core repulsion = 15338.951431 eV Total energy + Delta-G solvation = -2842.016193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28363 -38.18713 -36.13298 -32.78682 -30.58679 -29.85949 -29.54564 -27.86426 -26.48467 -23.10761 -22.41478 -21.25140 -20.38853 -19.95791 -16.72009 -16.32299 -15.94300 -15.50694 -15.25710 -14.95173 -14.52115 -13.87243 -13.45858 -13.25597 -12.73473 -12.44139 -12.34938 -12.00586 -11.86164 -11.46946 -11.02191 -10.90467 -10.73445 -10.59150 -10.54897 -10.16183 -10.03777 -9.67820 -9.36765 -9.14128 -8.65603 -8.06869 -7.69286 -7.37703 -5.87513 -4.20917 2.52938 2.68431 3.32213 3.36386 3.38487 4.25667 4.36494 4.40246 4.84452 5.08288 5.18217 5.32347 5.52282 5.61070 5.73192 5.82850 5.87229 5.94132 6.01356 6.10118 6.18011 6.31060 6.40907 6.46452 6.64342 6.82801 6.88319 6.96845 7.18039 7.35524 7.56887 7.70286 7.91720 8.09833 8.15001 8.37509 8.59844 9.00216 9.54453 10.97169 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.008641 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.506837 B = 3239.448007 C = 4247.843830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.246 3.754 10 H 0.016 0.984 11 O -0.366 6.366 12 C 0.070 3.930 13 C 0.071 3.929 14 H 0.091 0.909 15 C -0.186 4.186 16 C 0.024 3.976 17 O -0.353 6.353 18 C -0.041 4.041 19 C -0.044 4.044 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.151 4.151 23 C -0.130 4.130 24 H 0.262 0.738 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 -7.291 -4.335 8.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.119 4.119 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.190 3.810 10 H 0.034 0.966 11 O -0.285 6.285 12 C -0.008 4.008 13 C 0.013 3.987 14 H 0.108 0.892 15 C -0.223 4.223 16 C -0.054 4.054 17 O -0.271 6.271 18 C -0.042 4.042 19 C -0.063 4.063 20 C -0.173 4.173 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.182 0.818 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.469 -6.790 -4.277 8.158 hybrid contribution 0.810 0.869 0.190 1.203 sum -0.659 -5.921 -4.088 7.225 Atomic orbital electron populations 1.69782 1.05806 1.26008 1.46353 1.24953 0.94737 0.99059 0.93193 0.86687 0.79805 0.83087 0.78566 1.20091 1.21053 1.20293 1.21359 0.92799 0.90923 1.53287 0.92337 1.18539 0.86910 0.94591 0.80961 0.96631 1.88038 1.40043 1.81059 1.19375 1.22258 0.95137 0.95932 0.87443 1.23238 0.99693 0.83813 0.91972 0.89156 1.24419 1.02096 0.99270 0.96529 1.23453 0.99693 0.90965 0.91271 1.90090 1.93940 1.25074 1.18007 1.20017 0.94354 0.94258 0.95535 1.21897 0.92786 0.92257 0.99352 1.21159 0.99663 1.01700 0.94778 1.20809 0.96432 1.01439 0.97832 1.20684 0.95392 1.03176 0.97643 1.20783 0.98906 1.01339 0.93819 0.92749 0.93087 0.94304 0.88487 0.90461 0.90831 0.90128 0.81797 0.88072 0.88338 0.88072 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 8.50 55.43 0.47 -23.06 16 2 C 0.09 2.39 5.24 -17.82 -0.09 2.30 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.55 -15.04 8.89 -34.44 -0.31 -15.35 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.22 2.59 -29.04 -0.08 6.15 16 10 H 0.02 0.37 7.70 -51.93 -0.40 -0.03 16 11 O -0.37 -9.14 8.53 -35.23 -0.30 -9.44 16 12 C 0.07 1.43 5.78 37.16 0.21 1.65 16 13 C 0.07 1.24 4.37 -39.29 -0.17 1.07 16 14 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 15 C -0.19 -2.38 8.20 -26.31 -0.22 -2.59 16 16 C 0.02 0.32 8.74 24.64 0.22 0.54 16 17 O -0.35 -7.00 12.56 -35.23 -0.44 -7.44 16 18 C -0.04 -1.01 4.80 -104.63 -0.50 -1.51 16 19 C -0.04 -1.08 7.46 -39.58 -0.30 -1.38 16 20 C -0.15 -3.34 10.05 -39.58 -0.40 -3.74 16 21 C -0.15 -2.91 10.05 -39.59 -0.40 -3.31 16 22 C -0.15 -3.00 10.05 -39.59 -0.40 -3.40 16 23 C -0.13 -2.87 9.68 -39.59 -0.38 -3.25 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.17 4.39 5.50 -52.48 -0.29 4.10 16 32 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -30.34 294.82 -8.54 -38.88 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.88 Total: 2.89 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.81 Total: -22.82 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.47 Total: -23.06 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.74 Total: -16.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.34 -8.54 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.148 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds