Wall clock time and date at job start Mon Mar 30 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47425 * 239.99780 * 3 2 1 5 5 H 1.48499 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47130 * 120.00260 * 3 2 1 7 7 C 1.37878 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99738 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47002 * 179.97438 * 9 7 2 11 11 O 1.42902 * 109.46964 * 60.00402 * 9 7 2 12 12 C 1.42898 * 114.00186 * 89.99616 * 11 9 7 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 9 14 14 H 1.09008 * 112.68437 * 314.67052 * 13 12 11 15 15 C 1.53366 * 113.39627 * 184.15600 * 13 12 11 16 16 C 1.53452 * 81.23388 * 218.63066 * 15 13 12 17 17 O 1.43348 * 113.39306 * 85.18029 * 13 12 11 18 18 C 1.50698 * 109.47381 * 300.00319 * 9 7 2 19 19 C 1.38234 * 119.99817 * 84.72442 * 18 9 7 20 20 C 1.38241 * 119.99867 * 179.79059 * 19 18 9 21 21 C 1.38236 * 119.99498 * 0.43669 * 20 19 18 22 22 C 1.38228 * 120.00366 * 359.81717 * 21 20 19 23 23 C 1.38230 * 119.99942 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00302 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00293 * 12 11 9 26 26 H 1.09001 * 109.47074 * 60.00315 * 12 11 9 27 27 H 1.09005 * 114.56457 * 331.70730 * 15 13 12 28 28 H 1.09000 * 114.56495 * 105.51927 * 15 13 12 29 29 H 1.09002 * 113.34879 * 271.55446 * 16 15 13 30 30 H 1.08996 * 113.46604 * 141.36419 * 16 15 13 31 31 H 1.08003 * 120.00165 * 359.97438 * 19 18 9 32 32 H 1.08000 * 120.00087 * 180.27996 * 20 19 18 33 33 H 1.08009 * 119.99511 * 179.83697 * 21 20 19 34 34 H 1.08001 * 120.00373 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.00070 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 1.9593 -3.3276 -0.0015 11 8 0.4291 -2.5746 -1.1671 12 6 1.0737 -3.1703 -2.2947 13 6 0.1060 -3.1980 -3.4795 14 1 -0.8904 -3.5411 -3.2007 15 6 0.6731 -3.9126 -4.7124 16 6 -0.0621 -2.7683 -5.4229 17 8 0.0976 -1.9804 -4.2360 18 6 0.3850 -2.5793 1.2302 19 6 -0.8704 -2.0007 1.2307 20 6 -1.6665 -2.0779 2.3582 21 6 -1.2035 -2.7260 3.4881 22 6 0.0540 -3.3000 3.4892 23 6 0.8483 -3.2265 2.3604 24 1 -0.4850 0.8400 0.0004 25 1 1.9553 -2.5866 -2.5597 26 1 1.3732 -4.1884 -2.0461 27 1 1.7591 -3.8757 -4.7980 28 1 0.2550 -4.9026 -4.8945 29 1 -1.1023 -2.9995 -5.6520 30 1 0.4794 -2.3716 -6.2817 31 1 -1.2304 -1.4909 0.3493 32 1 -2.6492 -1.6298 2.3572 33 1 -1.8245 -2.7841 4.3699 34 1 0.4159 -3.8059 4.3721 35 1 1.8306 -3.6753 2.3611 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224474326.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:05 Heat of formation + Delta-G solvation = -38.998713 kcal Electronic energy + Delta-G solvation = -18181.759735 eV Core-core repulsion = 15338.951431 eV Total energy + Delta-G solvation = -2842.808304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57498 -39.91291 -37.91355 -34.76183 -32.34917 -31.36793 -31.09732 -29.31590 -28.37022 -24.84286 -23.95248 -22.91081 -21.92810 -21.41934 -18.69610 -17.68678 -17.56299 -16.94644 -16.89241 -16.51315 -16.35585 -15.51985 -15.28423 -14.92380 -14.37234 -14.04729 -13.74647 -13.52164 -13.42841 -13.21785 -12.82945 -12.75089 -12.53917 -12.17997 -11.89457 -11.75225 -11.63658 -11.41452 -11.07590 -10.69309 -10.63123 -9.91167 -9.40526 -9.15844 -7.90179 -6.32855 0.82958 1.00530 1.36786 1.38560 1.44571 2.38792 2.97895 3.09056 3.24370 3.34362 3.51804 4.09002 4.21297 4.34578 4.38573 4.40869 4.44963 4.53829 4.60690 4.65479 4.77047 4.84538 4.91173 4.97655 5.14991 5.22951 5.29837 5.40461 5.48126 5.62284 5.69009 5.89132 6.05725 6.17031 6.37289 6.53204 6.64728 7.09684 7.45862 8.89182 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.008641 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.506837 B = 3239.448007 C = 4247.843830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.570 4.570 8 H 0.050 0.950 9 C 0.244 3.756 10 H 0.018 0.982 11 O -0.389 6.389 12 C 0.063 3.937 13 C 0.059 3.941 14 H 0.091 0.909 15 C -0.157 4.157 16 C 0.020 3.980 17 O -0.407 6.407 18 C -0.070 4.070 19 C -0.068 4.068 20 C -0.162 4.162 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.142 4.142 24 H 0.258 0.742 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.327 -8.450 -3.662 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.607 4.607 8 H 0.068 0.932 9 C 0.188 3.812 10 H 0.036 0.964 11 O -0.309 6.309 12 C -0.014 4.014 13 C 0.001 3.999 14 H 0.108 0.892 15 C -0.195 4.195 16 C -0.056 4.056 17 O -0.327 6.327 18 C -0.071 4.071 19 C -0.087 4.087 20 C -0.180 4.180 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.160 4.160 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.651 -7.965 -3.614 8.901 hybrid contribution 0.839 1.156 -0.020 1.428 sum -0.812 -6.809 -3.634 7.761 Atomic orbital electron populations 1.70018 1.06539 1.26049 1.46736 1.25602 0.95577 1.01659 0.93212 0.85869 0.78773 0.79947 0.78511 1.20146 1.20648 1.19690 1.21623 0.92656 0.92516 1.53928 0.93172 1.18521 0.87241 0.93665 0.81807 0.96402 1.87996 1.40732 1.81847 1.20343 1.22519 0.95154 0.96372 0.87358 1.23417 0.99490 0.84607 0.92383 0.89163 1.24295 1.02397 1.00505 0.92260 1.23770 1.01432 0.90348 0.90091 1.90044 1.94292 1.27332 1.20999 1.20124 0.94744 0.96046 0.96145 1.21662 0.93701 0.93650 0.99647 1.21390 1.00170 1.01881 0.94553 1.21245 0.96758 0.99534 0.98239 1.21140 0.94948 1.02079 0.97989 1.21043 0.99935 1.01210 0.93802 0.93231 0.95460 0.91870 0.87933 0.86924 0.88793 0.88267 0.84876 0.86318 0.84334 0.84128 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.55 8.50 21.45 0.18 -49.37 16 2 C 0.04 2.48 5.24 84.66 0.44 2.92 16 3 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.57 -32.45 8.89 25.60 0.23 -32.23 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.24 12.78 2.59 29.10 0.08 12.86 16 10 H 0.02 0.89 7.70 -2.39 -0.02 0.87 16 11 O -0.39 -20.33 8.53 -148.98 -1.27 -21.60 16 12 C 0.06 2.67 5.78 71.98 0.42 3.08 16 13 C 0.06 2.08 4.37 22.46 0.10 2.18 16 14 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 15 C -0.16 -3.70 8.20 30.87 0.25 -3.45 16 16 C 0.02 0.51 8.74 63.88 0.56 1.07 16 17 O -0.41 -16.46 12.56 -148.98 -1.87 -18.33 16 18 C -0.07 -3.51 4.80 -19.87 -0.10 -3.60 16 19 C -0.07 -3.39 7.46 22.27 0.17 -3.22 16 20 C -0.16 -6.82 10.05 22.27 0.22 -6.60 16 21 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 22 C -0.14 -5.27 10.05 22.27 0.22 -5.04 16 23 C -0.14 -6.09 9.68 22.27 0.22 -5.88 16 24 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 25 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 27 H 0.10 2.31 8.13 -2.38 -0.02 2.29 16 28 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.13 7.49 5.50 -2.91 -0.02 7.48 16 32 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 35 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -68.35 294.82 3.16 -65.19 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.06 Total: 19.68 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.03 Total: -42.78 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.18 Total: -49.37 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -3.14 Total: -39.93 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.35 3.16 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224474326.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.188 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds