Wall clock time and date at job start Mon Mar 30 2020 18:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 119.99749 * 2 1 4 4 H 1.08001 * 120.00307 * 203.04528 * 3 2 1 5 5 C 1.38815 * 120.00513 * 23.04751 * 3 2 1 6 6 N 1.31624 * 119.99794 * 12.96626 * 5 3 2 7 7 Si 1.86798 * 120.00191 * 192.97295 * 5 3 2 8 8 H 1.48502 * 109.47133 * 59.99455 * 7 5 3 9 9 H 1.48504 * 109.47203 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47195 * 299.99517 * 7 5 3 11 11 C 1.46499 * 119.99849 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.46608 * 90.00302 * 11 2 1 13 13 C 1.34246 * 125.03661 * 264.99821 * 12 11 2 14 14 C 1.46477 * 107.01071 * 180.02562 * 13 12 11 15 15 C 1.39704 * 134.00976 * 179.97438 * 14 13 12 16 16 C 1.36604 * 119.80624 * 179.71232 * 15 14 13 17 17 C 1.38833 * 120.54727 * 0.59084 * 16 15 14 18 18 C 1.37943 * 120.63369 * 359.42334 * 17 16 15 19 19 F 1.35099 * 120.12925 * 180.29465 * 18 17 16 20 20 C 1.39308 * 119.73804 * 0.27402 * 18 17 16 21 21 N 1.36792 * 125.04020 * 84.99779 * 12 11 2 22 22 H 0.97000 * 125.07362 * 0.03778 * 21 12 11 23 23 H 1.09006 * 109.47050 * 275.12102 * 1 2 3 24 24 H 1.09001 * 109.47152 * 35.12218 * 1 2 3 25 25 H 1.09000 * 109.47095 * 155.12242 * 1 2 3 26 26 H 0.96995 * 120.00259 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47554 * 330.00552 * 11 2 1 28 28 H 1.08997 * 109.47221 * 209.99946 * 11 2 1 29 29 H 1.08008 * 126.49749 * 0.03181 * 13 12 11 30 30 H 1.08001 * 120.09594 * 0.02847 * 15 14 13 31 31 H 1.08003 * 119.72696 * 180.29487 * 16 15 14 32 32 H 1.07996 * 119.68640 * 179.70312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4122 2.2597 1.1466 7 14 2.3152 4.0074 0.1445 8 1 2.4180 4.2276 -1.3205 9 1 1.4731 5.0721 0.7468 10 1 3.6717 4.0482 0.7475 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4202 13 6 1.6740 -2.5527 -2.1145 14 6 2.2789 -2.6977 -3.4407 15 6 1.9467 -3.4278 -4.5845 16 6 2.7348 -3.3429 -5.6970 17 6 3.8715 -2.5458 -5.6972 18 6 4.2189 -1.8165 -4.5790 19 9 5.3240 -1.0395 -4.5924 20 6 3.4254 -1.8841 -3.4360 21 7 3.4998 -1.2937 -2.1933 22 1 4.1945 -0.6795 -1.9088 23 1 -0.3633 0.0917 1.0236 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0150 3.0662 1.4751 27 1 1.6084 -2.0282 0.5146 28 1 3.1499 -1.1382 0.5143 29 1 0.7749 -3.0367 -1.7622 30 1 1.0664 -4.0536 -4.5909 31 1 2.4741 -3.9041 -6.5821 32 1 4.4873 -2.4926 -6.5828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235245028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:26 Heat of formation + Delta-G solvation = 31.785284 kcal Electronic energy + Delta-G solvation = -17443.966310 eV Core-core repulsion = 14513.059877 eV Total energy + Delta-G solvation = -2930.906433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.66765 -40.84533 -36.93785 -35.33063 -31.75621 -31.12492 -29.29826 -28.69046 -26.26831 -25.65330 -22.32007 -21.90871 -20.91681 -19.79414 -17.85773 -16.86306 -16.60490 -15.64876 -15.56235 -15.03964 -14.74922 -14.47091 -13.92149 -13.52952 -13.17547 -13.00824 -12.62964 -12.57945 -11.67740 -11.50564 -11.36883 -11.29707 -11.08339 -10.90584 -10.69786 -10.46354 -10.09657 -10.03076 -9.27650 -8.66740 -7.95701 -7.34854 -6.90369 -5.83670 -3.32937 1.20336 1.72396 3.05794 3.31746 3.37977 3.39389 3.43682 3.98332 4.42276 4.46566 4.91601 5.03002 5.20333 5.37084 5.47225 5.55675 5.59009 5.82320 5.94103 6.08289 6.21156 6.31111 6.38321 6.44280 6.68508 6.71990 6.99120 7.15963 7.30678 7.45568 7.61939 7.69869 7.87654 8.26398 9.10170 9.71898 10.20096 11.20276 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.006376 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.389503 B = 4390.286748 C = 5053.919589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.590 5.590 3 C -0.266 4.266 4 H 0.063 0.937 5 C 0.009 3.991 6 N -0.901 5.901 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.288 1.288 10 H -0.282 1.282 11 C 0.196 3.804 12 C 0.111 3.889 13 C -0.224 4.224 14 C -0.076 4.076 15 C -0.085 4.085 16 C -0.130 4.130 17 C -0.149 4.149 18 C 0.086 3.914 19 F -0.148 7.148 20 C 0.056 3.944 21 N -0.573 5.573 22 H 0.417 0.583 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.003 0.997 26 H 0.255 0.745 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -10.660 -8.971 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.311 5.311 3 C -0.395 4.395 4 H 0.081 0.919 5 C -0.190 4.190 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.214 1.214 10 H -0.208 1.208 11 C 0.066 3.934 12 C -0.002 4.002 13 C -0.249 4.249 14 C -0.081 4.081 15 C -0.103 4.103 16 C -0.149 4.149 17 C -0.169 4.169 18 C 0.065 3.935 19 F -0.127 7.127 20 C -0.053 4.053 21 N -0.175 5.175 22 H 0.254 0.746 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.828 -10.353 -8.764 14.094 hybrid contribution 0.887 1.549 -0.227 1.799 sum 4.714 -8.805 -8.991 13.438 Atomic orbital electron populations 1.20856 0.81989 0.95920 0.99627 1.43887 1.02097 0.99918 1.85158 1.19027 0.98216 0.85688 1.36591 0.91884 1.25003 0.97707 0.98539 0.97739 1.70053 1.19169 1.27593 1.37676 0.86345 0.78536 0.83663 0.78038 1.21037 1.21378 1.20793 1.19561 0.97524 0.89824 0.86452 1.22459 0.86812 0.93751 0.97195 1.21359 1.03350 1.07756 0.92450 1.19155 0.94855 0.98763 0.95367 1.20283 0.99655 0.98931 0.91475 1.20335 0.95215 1.00837 0.98544 1.20657 0.99763 0.99817 0.96649 1.16741 0.85755 0.97293 0.93738 1.91448 1.50927 1.73256 1.97048 1.18243 0.98891 1.00836 0.87304 1.41885 1.25029 1.40740 1.09801 0.74615 0.94662 0.94047 0.97828 0.93461 0.91015 0.92090 0.83803 0.85824 0.85641 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 8.98 59.85 0.54 4.39 16 2 N -0.59 -14.25 2.90 -182.50 -0.53 -14.78 16 3 C -0.27 -7.07 9.65 -15.06 -0.15 -7.22 16 4 H 0.06 1.62 7.86 -52.49 -0.41 1.21 16 5 C 0.01 0.26 5.10 -17.43 -0.09 0.17 16 6 N -0.90 -25.71 10.71 55.49 0.59 -25.11 16 7 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 8 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.20 3.80 6.15 -5.19 -0.03 3.76 16 12 C 0.11 2.04 6.66 -81.78 -0.55 1.50 16 13 C -0.22 -3.86 10.95 -37.67 -0.41 -4.28 16 14 C -0.08 -1.27 6.37 -105.15 -0.67 -1.94 16 15 C -0.08 -1.17 10.05 -39.62 -0.40 -1.57 16 16 C -0.13 -1.60 9.97 -39.95 -0.40 -2.00 16 17 C -0.15 -2.00 9.99 -39.47 -0.39 -2.39 16 18 C 0.09 1.39 7.32 -39.29 -0.29 1.11 16 19 F -0.15 -2.42 17.27 2.25 0.04 -2.38 16 20 C 0.06 0.99 7.26 -83.91 -0.61 0.38 16 21 N -0.57 -10.26 6.07 -6.91 -0.04 -10.30 16 22 H 0.42 7.02 8.96 -40.82 -0.37 6.66 16 23 H 0.04 0.90 7.34 -51.93 -0.38 0.52 16 24 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 25 H 0.00 0.07 8.03 -51.93 -0.42 -0.35 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 28 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 29 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 282.51 15.07 4.26 4.26 Total: -1.00 -29.69 282.51 -7.77 -37.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.62 Total: 2.35 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.44 Total: -8.10 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.02 Total: -50.20 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.69 -7.77 -37.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235245028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.248 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds