Wall clock time and date at job start Mon Mar 30 2020 18:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 119.99749 * 2 1 4 4 H 1.08001 * 120.00307 * 203.04528 * 3 2 1 5 5 C 1.38815 * 120.00513 * 23.04751 * 3 2 1 6 6 N 1.31624 * 119.99794 * 12.96626 * 5 3 2 7 7 Si 1.86798 * 120.00191 * 192.97295 * 5 3 2 8 8 H 1.48502 * 109.47133 * 59.99455 * 7 5 3 9 9 H 1.48504 * 109.47203 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47195 * 299.99517 * 7 5 3 11 11 C 1.46499 * 119.99849 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.46608 * 90.00302 * 11 2 1 13 13 C 1.34246 * 125.03661 * 264.99821 * 12 11 2 14 14 C 1.46477 * 107.01071 * 180.02562 * 13 12 11 15 15 C 1.39704 * 134.00976 * 179.97438 * 14 13 12 16 16 C 1.36604 * 119.80624 * 179.71232 * 15 14 13 17 17 C 1.38833 * 120.54727 * 0.59084 * 16 15 14 18 18 C 1.37943 * 120.63369 * 359.42334 * 17 16 15 19 19 F 1.35099 * 120.12925 * 180.29465 * 18 17 16 20 20 C 1.39308 * 119.73804 * 0.27402 * 18 17 16 21 21 N 1.36792 * 125.04020 * 84.99779 * 12 11 2 22 22 H 0.97000 * 125.07362 * 0.03778 * 21 12 11 23 23 H 1.09006 * 109.47050 * 275.12102 * 1 2 3 24 24 H 1.09001 * 109.47152 * 35.12218 * 1 2 3 25 25 H 1.09000 * 109.47095 * 155.12242 * 1 2 3 26 26 H 0.96995 * 120.00259 * 180.02562 * 6 5 3 27 27 H 1.08999 * 109.47554 * 330.00552 * 11 2 1 28 28 H 1.08997 * 109.47221 * 209.99946 * 11 2 1 29 29 H 1.08008 * 126.49749 * 0.03181 * 13 12 11 30 30 H 1.08001 * 120.09594 * 0.02847 * 15 14 13 31 31 H 1.08003 * 119.72696 * 180.29487 * 16 15 14 32 32 H 1.07996 * 119.68640 * 179.70312 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4122 2.2597 1.1466 7 14 2.3152 4.0074 0.1445 8 1 2.4180 4.2276 -1.3205 9 1 1.4731 5.0721 0.7468 10 1 3.6717 4.0482 0.7475 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7043 -1.4202 13 6 1.6740 -2.5527 -2.1145 14 6 2.2789 -2.6977 -3.4407 15 6 1.9467 -3.4278 -4.5845 16 6 2.7348 -3.3429 -5.6970 17 6 3.8715 -2.5458 -5.6972 18 6 4.2189 -1.8165 -4.5790 19 9 5.3240 -1.0395 -4.5924 20 6 3.4254 -1.8841 -3.4360 21 7 3.4998 -1.2937 -2.1933 22 1 4.1945 -0.6795 -1.9088 23 1 -0.3633 0.0917 1.0236 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3633 -0.9323 -0.4323 26 1 -0.0150 3.0662 1.4751 27 1 1.6084 -2.0282 0.5146 28 1 3.1499 -1.1382 0.5143 29 1 0.7749 -3.0367 -1.7622 30 1 1.0664 -4.0536 -4.5909 31 1 2.4741 -3.9041 -6.5821 32 1 4.4873 -2.4926 -6.5828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235245028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:25 Heat of formation + Delta-G solvation = 15.278235 kcal Electronic energy + Delta-G solvation = -17444.682109 eV Core-core repulsion = 14513.059877 eV Total energy + Delta-G solvation = -2931.622233 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.87269 -42.09592 -38.22358 -37.03514 -33.56832 -32.43040 -30.70278 -29.92800 -28.05329 -27.37023 -23.82697 -23.18453 -22.32840 -21.16887 -19.19325 -18.63399 -17.89790 -17.04579 -16.79372 -16.70902 -16.08075 -15.64333 -15.56593 -15.23872 -14.65438 -14.45495 -14.11085 -13.80871 -13.29453 -13.09170 -12.84926 -12.70331 -12.54319 -12.45671 -12.27897 -12.18439 -12.03708 -11.89352 -10.71157 -10.49508 -9.20268 -8.87879 -8.55809 -7.88225 -5.38889 0.04296 0.59860 1.40579 1.43609 1.49164 1.72691 2.16834 2.46674 2.85226 3.24969 3.31870 3.73781 3.80011 3.97818 4.04525 4.39118 4.44298 4.45942 4.62417 4.84119 4.86744 4.94004 5.04044 5.20964 5.30559 5.32584 5.55858 5.60220 5.70081 5.83975 5.92006 6.21243 6.26004 6.55961 7.08590 7.78040 8.21685 9.13634 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.006376 C = 0.005539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.389503 B = 4390.286748 C = 5053.919589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.606 5.606 3 C -0.267 4.267 4 H 0.066 0.934 5 C -0.046 4.046 6 N -0.931 5.931 7 Si 0.963 3.037 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.273 1.273 11 C 0.199 3.801 12 C 0.087 3.913 13 C -0.219 4.219 14 C -0.099 4.099 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.134 4.134 18 C 0.055 3.945 19 F -0.157 7.157 20 C 0.034 3.966 21 N -0.583 5.583 22 H 0.415 0.585 23 H 0.013 0.987 24 H 0.009 0.991 25 H 0.036 0.964 26 H 0.250 0.750 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.162 0.838 30 H 0.152 0.848 31 H 0.168 0.832 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -12.302 -11.116 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.328 5.328 3 C -0.397 4.397 4 H 0.083 0.917 5 C -0.242 4.242 6 N -0.577 5.577 7 Si 0.791 3.209 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.199 1.199 11 C 0.072 3.928 12 C -0.025 4.025 13 C -0.244 4.244 14 C -0.105 4.105 15 C -0.101 4.101 16 C -0.140 4.140 17 C -0.154 4.154 18 C 0.033 3.967 19 F -0.136 7.136 20 C -0.074 4.074 21 N -0.185 5.185 22 H 0.251 0.749 23 H 0.031 0.969 24 H 0.028 0.972 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.179 0.821 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.100 -12.034 -10.923 16.762 hybrid contribution 0.854 1.892 0.287 2.096 sum 4.954 -10.142 -10.637 15.509 Atomic orbital electron populations 1.20587 0.82306 0.96152 0.97900 1.44070 1.02253 1.00965 1.85536 1.19347 0.98342 0.86887 1.35106 0.91667 1.25706 0.98531 1.01553 0.98365 1.70199 1.20507 1.27786 1.39236 0.85421 0.78003 0.80034 0.77440 1.21308 1.21677 1.19850 1.19638 0.97324 0.88300 0.87567 1.22061 0.88131 0.95580 0.96727 1.21656 1.03264 1.06820 0.92692 1.19467 0.94900 0.99875 0.96237 1.20710 1.00595 0.98166 0.90646 1.20845 0.93859 0.99845 0.99423 1.21149 0.99953 0.97904 0.96393 1.17119 0.86166 0.98861 0.94534 1.91419 1.51326 1.73699 1.97124 1.18623 0.99898 1.01444 0.87433 1.41882 1.25109 1.41147 1.10313 0.74864 0.96885 0.97212 0.94534 0.94085 0.88956 0.92088 0.82084 0.82995 0.81428 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.50 8.98 127.77 1.15 9.64 16 2 N -0.61 -29.48 2.90 -731.29 -2.12 -31.60 16 3 C -0.27 -14.36 9.65 84.04 0.81 -13.54 16 4 H 0.07 3.40 7.86 -2.91 -0.02 3.38 16 5 C -0.05 -2.54 5.10 84.86 0.43 -2.10 16 6 N -0.93 -54.45 10.71 21.65 0.23 -54.22 16 7 Si 0.96 45.17 29.57 68.60 2.03 47.19 16 8 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 C 0.20 7.66 6.15 85.64 0.53 8.18 16 12 C 0.09 3.16 6.66 40.88 0.27 3.43 16 13 C -0.22 -7.21 10.95 23.51 0.26 -6.96 16 14 C -0.10 -3.14 6.37 -20.20 -0.13 -3.27 16 15 C -0.08 -1.97 10.05 22.24 0.22 -1.74 16 16 C -0.12 -2.42 9.97 22.03 0.22 -2.20 16 17 C -0.13 -3.14 9.99 22.34 0.22 -2.92 16 18 C 0.05 1.69 7.32 22.46 0.16 1.86 16 19 F -0.16 -5.06 17.27 44.97 0.78 -4.28 16 20 C 0.03 1.18 7.26 39.04 0.28 1.46 16 21 N -0.58 -20.96 6.07 -175.78 -1.07 -22.03 16 22 H 0.41 14.39 8.96 -92.71 -0.83 13.56 16 23 H 0.01 0.68 7.34 -2.38 -0.02 0.66 16 24 H 0.01 0.49 7.34 -2.39 -0.02 0.48 16 25 H 0.04 1.48 8.03 -2.39 -0.02 1.46 16 26 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.09 3.11 8.07 -2.39 -0.02 3.09 16 28 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 29 H 0.16 4.55 8.06 -2.91 -0.02 4.52 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -64.60 282.51 4.59 -60.01 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.31 Total: 13.08 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.43 Total: -8.16 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -2.96 Total: -107.85 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.78 Total: -4.28 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -64.60 4.59 -60.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235245028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.290 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds