Wall clock time and date at job start Mon Mar 30 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 119.99777 * 2 1 4 4 H 1.07998 * 119.99848 * 200.36736 * 3 2 1 5 5 C 1.38814 * 120.00200 * 20.36867 * 3 2 1 6 6 N 1.31617 * 119.99678 * 14.94785 * 5 3 2 7 7 Si 1.86798 * 120.00173 * 194.94860 * 5 3 2 8 8 H 1.48499 * 109.47000 * 85.00034 * 7 5 3 9 9 H 1.48501 * 109.47043 * 205.00177 * 7 5 3 10 10 H 1.48496 * 109.46986 * 325.00392 * 7 5 3 11 11 C 1.46498 * 120.00448 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47357 * 270.00154 * 11 2 1 13 13 C 1.37750 * 120.02634 * 259.99903 * 12 11 2 14 14 C 1.38987 * 120.64968 * 179.97438 * 13 12 11 15 15 F 1.35099 * 119.83123 * 179.70130 * 14 13 12 16 16 C 1.37829 * 120.33406 * 359.97034 * 14 13 12 17 17 C 1.39623 * 119.63007 * 0.02562 * 16 14 13 18 18 C 1.46494 * 133.98570 * 180.02562 * 17 16 14 19 19 C 1.34232 * 107.01964 * 180.02562 * 18 17 16 20 20 N 1.36818 * 109.93809 * 359.97438 * 19 18 17 21 21 H 0.96994 * 125.06927 * 179.97438 * 20 19 18 22 22 C 1.37818 * 109.86367 * 0.02562 * 20 19 18 23 23 H 1.09004 * 109.47504 * 275.05197 * 1 2 3 24 24 H 1.08997 * 109.47323 * 35.06101 * 1 2 3 25 25 H 1.09007 * 109.46948 * 155.05489 * 1 2 3 26 26 H 0.96999 * 120.00084 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.47300 * 149.99838 * 11 2 1 28 28 H 1.09004 * 109.46986 * 29.99820 * 11 2 1 29 29 H 1.08004 * 119.67685 * 359.97438 * 13 12 11 30 30 H 1.08001 * 120.18909 * 179.97438 * 16 14 13 31 31 H 1.08010 * 126.48632 * 0.02562 * 18 17 16 32 32 H 1.07998 * 125.03621 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1789 1.2152 -0.3255 5 6 1.5206 2.3505 0.4184 6 7 0.3871 2.2835 1.0841 7 14 2.2828 4.0127 0.0367 8 1 1.8694 4.4466 -1.3219 9 1 1.8223 5.0097 1.0364 10 1 3.7627 3.9031 0.0923 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 3.6784 -1.4854 2.0010 14 6 3.9240 -1.8815 3.3104 15 9 5.1380 -1.6640 3.8618 16 6 2.9370 -2.4999 4.0473 17 6 1.6859 -2.7282 3.4712 18 6 0.4430 -3.3402 3.9473 19 6 -0.4377 -3.2788 2.9360 20 7 0.1390 -2.6771 1.8510 21 1 -0.3014 -2.5204 1.0011 22 6 1.4393 -2.3278 2.1453 23 1 -0.3634 0.0905 1.0237 24 1 -0.3634 0.8412 -0.5903 25 1 -0.3633 -0.9319 -0.4334 26 1 -0.0526 3.0973 1.3761 27 1 3.1499 -1.1381 -0.5144 28 1 1.6085 -2.0281 -0.5147 29 1 4.4593 -1.0012 1.4334 30 1 3.1306 -2.8071 5.0645 31 1 0.2683 -3.7610 4.9265 32 1 -1.4516 -3.6489 2.9735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249524848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:44 Heat of formation + Delta-G solvation = 35.436301 kcal Electronic energy + Delta-G solvation = -17903.262415 eV Core-core repulsion = 14972.514302 eV Total energy + Delta-G solvation = -2930.748113 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.26256 -40.75781 -36.61671 -35.31171 -32.30662 -30.60854 -28.85858 -28.37684 -26.12311 -25.66519 -22.30289 -21.42702 -21.00072 -19.69017 -17.72204 -16.76677 -16.45751 -15.74527 -15.08871 -14.85618 -14.68800 -14.02562 -13.58871 -13.34703 -13.24497 -12.98601 -12.63625 -12.23776 -12.16596 -11.73799 -11.25499 -11.01635 -10.78151 -10.62915 -10.44685 -10.39901 -10.07098 -9.93417 -9.17338 -8.63118 -7.65059 -7.24468 -6.87489 -5.81947 -3.23725 1.52069 2.00931 3.08658 3.35848 3.42008 3.43269 3.58364 4.24148 4.47635 4.78952 5.13782 5.24386 5.39458 5.47591 5.58005 5.67509 5.81962 5.88361 6.05681 6.21680 6.32898 6.41967 6.50513 6.55535 6.74192 7.00855 7.14340 7.19174 7.20919 7.55299 7.63664 7.73197 7.93075 8.27440 9.12104 9.74300 10.21162 11.23265 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.008454 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.163399 B = 3311.304757 C = 4065.448878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.588 5.588 3 C -0.255 4.255 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.179 3.821 12 C -0.055 4.055 13 C -0.132 4.132 14 C 0.074 3.926 15 F -0.151 7.151 16 C -0.133 4.133 17 C -0.089 4.089 18 C -0.215 4.215 19 C 0.053 3.947 20 N -0.585 5.585 21 H 0.414 0.586 22 C 0.104 3.896 23 H 0.032 0.968 24 H 0.048 0.952 25 H -0.008 1.008 26 H 0.254 0.746 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -11.129 1.878 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.309 5.309 3 C -0.384 4.384 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.052 3.948 12 C -0.061 4.061 13 C -0.154 4.154 14 C 0.054 3.946 15 F -0.130 7.130 16 C -0.154 4.154 17 C -0.094 4.094 18 C -0.241 4.241 19 C -0.074 4.074 20 N -0.188 5.188 21 H 0.252 0.748 22 C -0.004 4.004 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.010 0.990 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.149 0.851 30 H 0.142 0.858 31 H 0.159 0.841 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.630 -10.925 1.799 11.090 hybrid contribution 0.233 1.234 -0.069 1.257 sum -0.398 -9.691 1.729 9.852 Atomic orbital electron populations 1.20875 0.82545 0.95284 0.99614 1.44181 1.01804 1.00378 1.84497 1.19248 0.97388 0.84443 1.37350 0.90898 1.25027 0.97850 0.98628 0.98040 1.70073 1.18672 1.27069 1.38860 0.86226 0.78839 0.83677 0.77570 1.21358 1.21694 1.20356 1.19971 0.97165 0.88413 0.89261 1.20025 0.90295 0.95240 1.00549 1.20538 0.97860 1.03357 0.93638 1.17337 0.80890 1.03527 0.92844 1.91419 1.42318 1.93427 1.85857 1.20101 0.91795 1.03663 0.99808 1.18826 0.94014 1.03184 0.93396 1.21497 0.92510 1.10430 0.99656 1.21729 0.98567 1.00004 0.87148 1.41859 1.10509 1.51879 1.14509 0.74789 1.18032 0.85711 1.01736 0.94897 0.94960 0.93280 0.98983 0.93603 0.92043 0.93718 0.85134 0.85817 0.84128 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 8.55 59.84 0.51 4.27 16 2 N -0.59 -14.23 2.91 -182.50 -0.53 -14.76 16 3 C -0.25 -6.86 9.68 -15.06 -0.15 -7.01 16 4 H 0.07 1.92 7.86 -52.49 -0.41 1.50 16 5 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 6 N -0.90 -26.11 10.67 55.49 0.59 -25.51 16 7 Si 0.91 21.84 29.58 -169.99 -5.03 16.81 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.18 3.59 5.84 -5.19 -0.03 3.56 16 12 C -0.05 -1.10 5.47 -104.50 -0.57 -1.67 16 13 C -0.13 -2.62 9.61 -39.48 -0.38 -3.00 16 14 C 0.07 1.41 7.29 -39.45 -0.29 1.13 16 15 F -0.15 -2.81 17.26 2.25 0.04 -2.77 16 16 C -0.13 -2.40 10.07 -39.21 -0.40 -2.80 16 17 C -0.09 -1.63 6.37 -105.14 -0.67 -2.30 16 18 C -0.22 -3.24 11.08 -37.67 -0.42 -3.66 16 19 C 0.05 0.73 11.81 -16.74 -0.20 0.53 16 20 N -0.59 -9.37 6.08 -10.64 -0.06 -9.44 16 21 H 0.41 6.05 7.63 -40.82 -0.31 5.74 16 22 C 0.10 1.98 6.97 -83.95 -0.59 1.39 16 23 H 0.03 0.83 7.40 -51.93 -0.38 0.44 16 24 H 0.05 1.25 7.21 -51.93 -0.37 0.87 16 25 H -0.01 -0.16 7.02 -51.93 -0.36 -0.52 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.18 7.88 -51.93 -0.41 0.77 16 28 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 29 H 0.13 2.45 8.02 -52.48 -0.42 2.03 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.14 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 279.00 15.07 4.20 4.20 Total: -1.00 -30.84 279.00 -7.53 -38.37 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.49 Total: 2.64 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.26 Total: -9.55 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.00 Total: -49.71 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.84 -7.53 -38.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249524848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.811 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds