Wall clock time and date at job start Mon Mar 30 2020 18:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 119.99777 * 2 1 4 4 H 1.07998 * 119.99848 * 200.36736 * 3 2 1 5 5 C 1.38814 * 120.00200 * 20.36867 * 3 2 1 6 6 N 1.31617 * 119.99678 * 14.94785 * 5 3 2 7 7 Si 1.86798 * 120.00173 * 194.94860 * 5 3 2 8 8 H 1.48499 * 109.47000 * 85.00034 * 7 5 3 9 9 H 1.48501 * 109.47043 * 205.00177 * 7 5 3 10 10 H 1.48496 * 109.46986 * 325.00392 * 7 5 3 11 11 C 1.46498 * 120.00448 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47357 * 270.00154 * 11 2 1 13 13 C 1.37750 * 120.02634 * 259.99903 * 12 11 2 14 14 C 1.38987 * 120.64968 * 179.97438 * 13 12 11 15 15 F 1.35099 * 119.83123 * 179.70130 * 14 13 12 16 16 C 1.37829 * 120.33406 * 359.97034 * 14 13 12 17 17 C 1.39623 * 119.63007 * 0.02562 * 16 14 13 18 18 C 1.46494 * 133.98570 * 180.02562 * 17 16 14 19 19 C 1.34232 * 107.01964 * 180.02562 * 18 17 16 20 20 N 1.36818 * 109.93809 * 359.97438 * 19 18 17 21 21 H 0.96994 * 125.06927 * 179.97438 * 20 19 18 22 22 C 1.37818 * 109.86367 * 0.02562 * 20 19 18 23 23 H 1.09004 * 109.47504 * 275.05197 * 1 2 3 24 24 H 1.08997 * 109.47323 * 35.06101 * 1 2 3 25 25 H 1.09007 * 109.46948 * 155.05489 * 1 2 3 26 26 H 0.96999 * 120.00084 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.47300 * 149.99838 * 11 2 1 28 28 H 1.09004 * 109.46986 * 29.99820 * 11 2 1 29 29 H 1.08004 * 119.67685 * 359.97438 * 13 12 11 30 30 H 1.08001 * 120.18909 * 179.97438 * 16 14 13 31 31 H 1.08010 * 126.48632 * 0.02562 * 18 17 16 32 32 H 1.07998 * 125.03621 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1789 1.2152 -0.3255 5 6 1.5206 2.3505 0.4184 6 7 0.3871 2.2835 1.0841 7 14 2.2828 4.0127 0.0367 8 1 1.8694 4.4466 -1.3219 9 1 1.8223 5.0097 1.0364 10 1 3.7627 3.9031 0.0923 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7044 1.4200 13 6 3.6784 -1.4854 2.0010 14 6 3.9240 -1.8815 3.3104 15 9 5.1380 -1.6640 3.8618 16 6 2.9370 -2.4999 4.0473 17 6 1.6859 -2.7282 3.4712 18 6 0.4430 -3.3402 3.9473 19 6 -0.4377 -3.2788 2.9360 20 7 0.1390 -2.6771 1.8510 21 1 -0.3014 -2.5204 1.0011 22 6 1.4393 -2.3278 2.1453 23 1 -0.3634 0.0905 1.0237 24 1 -0.3634 0.8412 -0.5903 25 1 -0.3633 -0.9319 -0.4334 26 1 -0.0526 3.0973 1.3761 27 1 3.1499 -1.1381 -0.5144 28 1 1.6085 -2.0281 -0.5147 29 1 4.4593 -1.0012 1.4334 30 1 3.1306 -2.8071 5.0645 31 1 0.2683 -3.7610 4.9265 32 1 -1.4516 -3.6489 2.9735 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249524848.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:43 Heat of formation + Delta-G solvation = 17.860466 kcal Electronic energy + Delta-G solvation = -17904.024561 eV Core-core repulsion = 14972.514302 eV Total energy + Delta-G solvation = -2931.510259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.72280 -42.05940 -38.15628 -36.96647 -34.01167 -32.30875 -30.26225 -29.71117 -27.96994 -27.39479 -23.96763 -22.82652 -22.51416 -21.01565 -19.16320 -18.60211 -17.93182 -17.13895 -16.81403 -16.46903 -16.10696 -15.62883 -15.38339 -14.93183 -14.81139 -14.20983 -14.13350 -13.69975 -13.45928 -13.37485 -13.04688 -12.88075 -12.59669 -12.26339 -12.12920 -12.03393 -11.86572 -11.72536 -10.67119 -10.53551 -9.01501 -8.91570 -8.49624 -7.87102 -5.31013 0.14085 0.55683 1.45037 1.45273 1.53362 1.89647 2.36792 2.48424 2.82567 3.27951 3.41066 3.78188 3.80108 4.00212 4.19896 4.33462 4.46544 4.47716 4.68836 4.75259 4.88556 4.90680 5.10857 5.15101 5.27841 5.32335 5.55634 5.59535 5.68865 5.83566 5.88595 6.25244 6.28686 6.74565 7.11113 7.81271 8.22361 9.16157 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020872 B = 0.008454 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.163399 B = 3311.304757 C = 4065.448878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.603 5.603 3 C -0.258 4.258 4 H 0.073 0.927 5 C -0.051 4.051 6 N -0.934 5.934 7 Si 0.964 3.036 8 H -0.282 1.282 9 H -0.299 1.299 10 H -0.272 1.272 11 C 0.181 3.819 12 C -0.071 4.071 13 C -0.149 4.149 14 C 0.055 3.945 15 F -0.152 7.152 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.228 4.228 19 C 0.070 3.930 20 N -0.586 5.586 21 H 0.420 0.580 22 C 0.082 3.918 23 H 0.004 0.996 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.247 0.753 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -12.635 2.184 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.325 5.325 3 C -0.389 4.389 4 H 0.091 0.909 5 C -0.246 4.246 6 N -0.580 5.580 7 Si 0.792 3.208 8 H -0.208 1.208 9 H -0.225 1.225 10 H -0.197 1.197 11 C 0.055 3.945 12 C -0.076 4.076 13 C -0.170 4.170 14 C 0.035 3.965 15 F -0.131 7.131 16 C -0.150 4.150 17 C -0.114 4.114 18 C -0.253 4.253 19 C -0.057 4.057 20 N -0.188 5.188 21 H 0.259 0.741 22 C -0.026 4.026 23 H 0.023 0.977 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.147 0.853 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.379 -12.474 2.097 12.724 hybrid contribution 0.461 1.519 -0.137 1.593 sum -0.918 -10.955 1.960 11.167 Atomic orbital electron populations 1.20596 0.82309 0.96127 0.97685 1.44295 1.02221 1.01035 1.84923 1.19532 0.97395 0.85827 1.36109 0.90932 1.25696 0.98627 1.01543 0.98752 1.70230 1.20075 1.27054 1.40689 0.85327 0.78312 0.80009 0.77105 1.20846 1.22534 1.19661 1.20052 0.97357 0.87329 0.89802 1.19967 0.90975 0.96501 1.00187 1.20669 0.98235 1.03813 0.94274 1.17458 0.81380 1.04685 0.93011 1.91406 1.42370 1.93562 1.85798 1.20427 0.91492 1.02352 1.00707 1.19326 0.95177 1.03350 0.93527 1.21913 0.91180 1.10720 1.01446 1.22562 1.00107 0.97474 0.85523 1.41992 1.09589 1.51715 1.15528 0.74109 1.18207 0.86821 1.02159 0.95447 0.97741 0.96295 0.94687 0.94422 0.91742 0.91048 0.85288 0.83473 0.81291 0.76886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.19 8.55 127.77 1.09 9.29 16 2 N -0.60 -29.00 2.91 -731.31 -2.13 -31.13 16 3 C -0.26 -13.98 9.68 84.03 0.81 -13.17 16 4 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 5 C -0.05 -2.85 5.06 84.86 0.43 -2.42 16 6 N -0.93 -55.09 10.67 21.65 0.23 -54.86 16 7 Si 0.96 45.49 29.58 68.60 2.03 47.52 16 8 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 9 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 C 0.18 7.07 5.84 85.63 0.50 7.57 16 12 C -0.07 -2.80 5.47 -19.78 -0.11 -2.91 16 13 C -0.15 -5.92 9.61 22.33 0.21 -5.70 16 14 C 0.05 2.08 7.29 22.35 0.16 2.24 16 15 F -0.15 -5.64 17.26 44.97 0.78 -4.87 16 16 C -0.13 -4.52 10.07 22.51 0.23 -4.30 16 17 C -0.11 -3.77 6.37 -20.20 -0.13 -3.90 16 18 C -0.23 -6.08 11.08 23.51 0.26 -5.82 16 19 C 0.07 1.64 11.81 83.00 0.98 2.62 16 20 N -0.59 -17.16 6.08 -187.58 -1.14 -18.30 16 21 H 0.42 11.07 7.63 -92.71 -0.71 10.36 16 22 C 0.08 3.00 6.97 38.99 0.27 3.27 16 23 H 0.00 0.22 7.40 -2.39 -0.02 0.20 16 24 H 0.02 0.95 7.21 -2.39 -0.02 0.93 16 25 H 0.03 1.27 7.02 -2.38 -0.02 1.25 16 26 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.06 2.44 7.88 -2.39 -0.02 2.42 16 28 H 0.07 2.37 7.86 -2.39 -0.02 2.35 16 29 H 0.13 4.97 8.02 -2.91 -0.02 4.94 16 30 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.21 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -67.12 279.00 4.92 -62.20 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.44 Total: 12.66 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 4.72 Total: -13.22 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.04 Total: -104.29 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.78 Total: -4.87 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -67.12 4.92 -62.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249524848.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.058 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds