Wall clock time and date at job start Mon Mar 30 2020 18:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34706 * 117.00436 * 2 1 4 4 O 1.21475 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00230 * 179.97438 * 3 2 1 6 6 C 1.39622 * 120.14781 * 270.00079 * 5 3 2 7 7 C 1.50703 * 120.07824 * 0.02562 * 6 5 3 8 8 C 1.37946 * 119.84681 * 179.74321 * 6 5 3 9 9 C 1.38362 * 120.14847 * 0.25237 * 8 6 5 10 10 C 1.50703 * 119.84982 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47246 * 90.00116 * 10 9 8 12 12 H 1.07999 * 119.99791 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99801 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00437 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99768 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46826 * 120.00239 * 15 13 11 18 18 H 1.48496 * 109.46817 * 240.00120 * 15 13 11 19 19 C 1.38376 * 120.30421 * 359.97438 * 9 8 6 20 20 C 1.37939 * 120.15009 * 0.04214 * 19 9 8 21 21 C 1.50696 * 120.07609 * 179.97438 * 20 19 9 22 22 H 1.09001 * 109.47413 * 300.00586 * 1 2 3 23 23 H 1.09004 * 109.46676 * 59.99984 * 1 2 3 24 24 H 1.08994 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 269.72200 * 7 6 5 26 26 H 1.09001 * 109.46980 * 149.72300 * 7 6 5 27 27 H 1.09004 * 109.47113 * 29.72281 * 7 6 5 28 28 H 1.07999 * 119.92721 * 180.27784 * 8 6 5 29 29 H 1.08998 * 109.47141 * 210.00081 * 10 9 8 30 30 H 1.08998 * 109.46931 * 329.99721 * 10 9 8 31 31 H 0.96996 * 120.00194 * 179.97438 * 14 13 11 32 32 H 1.08005 * 119.92073 * 180.02562 * 19 9 8 33 33 H 1.09007 * 109.46919 * 90.00389 * 21 20 19 34 34 H 1.09007 * 109.47243 * 209.99772 * 21 20 19 35 35 H 1.08994 * 109.47430 * 330.00128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.2387 1.3144 1.2082 7 6 3.4909 1.2749 2.5160 8 6 5.6166 1.3811 1.2015 9 6 6.3047 1.4168 0.0017 10 6 7.8100 1.4892 0.0022 11 6 8.3800 0.0942 -0.0007 12 1 7.7184 -0.7594 -0.0023 13 6 9.7461 -0.0923 -0.0003 14 7 10.5518 0.9472 0.0032 15 14 10.4527 -1.8216 -0.0032 16 1 9.3439 -2.8093 -0.0064 17 1 11.2887 -2.0126 -1.2155 18 1 11.2871 -2.0173 1.2094 19 6 5.6172 1.3853 -1.1988 20 6 4.2394 1.3189 -1.2066 21 6 3.4924 1.2852 -2.5149 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.2608 2.2918 2.8338 26 1 4.1070 0.7885 3.2723 27 1 2.5640 0.7157 2.3878 28 1 6.1594 1.4052 2.1348 29 1 8.1485 2.0218 -0.8865 30 1 8.1480 2.0180 0.8934 31 1 11.5128 0.8159 0.0039 32 1 6.1607 1.4131 -2.1317 33 1 3.3617 0.2506 -2.8322 34 1 2.5157 1.7523 -2.3878 35 1 4.0592 1.8283 -3.2711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:52 Heat of formation + Delta-G solvation = -84.143427 kcal Electronic energy + Delta-G solvation = -17638.318486 eV Core-core repulsion = 14793.552561 eV Total energy + Delta-G solvation = -2844.765925 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56644 -38.73749 -36.29971 -33.88418 -33.32932 -31.94798 -28.48156 -27.87818 -26.80266 -26.32470 -23.86178 -21.73009 -20.46647 -19.62816 -17.67378 -16.90345 -16.53934 -16.36516 -15.02806 -14.79963 -14.29309 -13.82227 -13.74906 -13.11015 -13.02342 -12.99421 -12.62054 -12.49687 -12.39430 -12.19026 -11.92650 -11.56330 -11.27376 -11.04290 -10.83395 -10.80796 -10.65037 -10.40302 -10.34071 -9.63701 -9.47409 -8.48125 -8.15194 -7.96997 -6.09946 -4.14229 1.58937 1.83169 2.21129 2.87250 3.26698 3.34666 3.39652 4.15223 4.42867 4.87718 4.99734 5.03722 5.05863 5.10861 5.26081 5.32712 5.40088 5.51397 5.71552 5.77005 5.83558 5.87988 5.97721 6.05972 6.15140 6.28319 6.49641 6.51489 6.81046 6.98914 7.03247 7.39218 7.53511 7.71878 7.77420 7.85834 8.23343 8.91178 9.50218 11.00056 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.005180 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.920818 B = 5404.419067 C = 5474.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.529 3.471 4 O -0.507 6.507 5 C -0.147 4.147 6 C -0.045 4.045 7 C -0.117 4.117 8 C -0.128 4.128 9 C -0.002 4.002 10 C 0.044 3.956 11 C -0.513 4.513 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.129 4.129 20 C -0.045 4.045 21 C -0.118 4.118 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.128 0.872 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.262 0.738 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 -1.010 0.003 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.373 3.627 4 O -0.394 6.394 5 C -0.148 4.148 6 C -0.046 4.046 7 C -0.173 4.173 8 C -0.146 4.146 9 C -0.002 4.002 10 C 0.007 3.993 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.146 4.146 20 C -0.045 4.045 21 C -0.175 4.175 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.947 -0.670 0.004 15.961 hybrid contribution 0.288 -0.885 -0.003 0.931 sum -15.659 -1.555 0.000 15.736 Atomic orbital electron populations 1.23265 0.76963 1.03566 1.02397 1.86735 1.22824 1.33338 1.83983 1.21492 0.89351 0.81196 0.70691 1.90815 1.66907 1.36211 1.45509 1.18493 0.87717 1.13915 0.94634 1.19696 0.94008 0.97915 0.92945 1.20840 0.99533 1.02298 0.94659 1.20886 0.91847 1.02974 0.98936 1.20914 0.99166 0.88479 0.91642 1.18451 0.83948 0.98086 0.98813 1.21056 0.91350 0.91403 1.51307 0.92258 1.25002 0.97070 0.97102 0.95036 1.69961 1.03491 1.29402 1.50302 0.86469 0.79118 0.84426 0.77676 1.19601 1.20898 1.20893 1.20892 0.91851 1.02980 0.98926 1.19694 0.94006 0.97895 0.92952 1.20847 0.99504 1.02531 0.94586 0.92006 0.92006 0.88151 0.90958 0.90616 0.92411 0.85408 0.94917 0.94919 0.92801 0.85407 0.90783 0.92351 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.35 -5.08 10.58 -40.51 -0.43 -5.50 16 3 C 0.53 8.72 4.33 34.61 0.15 8.87 16 4 O -0.51 -9.10 16.89 -19.25 -0.33 -9.42 16 5 C -0.15 -2.60 5.75 -104.98 -0.60 -3.20 16 6 C -0.05 -0.79 5.91 -104.21 -0.62 -1.41 16 7 C -0.12 -1.64 9.63 36.01 0.35 -1.29 16 8 C -0.13 -2.47 9.34 -39.64 -0.37 -2.84 16 9 C 0.00 -0.04 5.08 -104.52 -0.53 -0.57 16 10 C 0.04 1.09 5.10 -29.03 -0.15 0.94 16 11 C -0.51 -13.96 9.09 -34.44 -0.31 -14.27 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 15 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.13 -2.47 9.34 -39.64 -0.37 -2.84 16 20 C -0.05 -0.79 5.91 -104.21 -0.62 -1.41 16 21 C -0.12 -1.66 9.61 36.00 0.35 -1.31 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 27 H 0.06 0.78 7.07 -51.93 -0.37 0.41 16 28 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 34 H 0.06 0.81 7.09 -51.93 -0.37 0.44 16 35 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -30.68 306.09 -7.10 -37.78 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.91 Total: -2.09 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.76 Total: -16.40 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.75 Total: -14.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.68 -7.10 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.367 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds