Wall clock time and date at job start Mon Mar 30 2020 18:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34706 * 117.00436 * 2 1 4 4 O 1.21475 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.47731 * 120.00230 * 179.97438 * 3 2 1 6 6 C 1.39622 * 120.14781 * 270.00079 * 5 3 2 7 7 C 1.50703 * 120.07824 * 0.02562 * 6 5 3 8 8 C 1.37946 * 119.84681 * 179.74321 * 6 5 3 9 9 C 1.38362 * 120.14847 * 0.25237 * 8 6 5 10 10 C 1.50703 * 119.84982 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47246 * 90.00116 * 10 9 8 12 12 H 1.07999 * 119.99791 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99801 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00437 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99768 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46826 * 120.00239 * 15 13 11 18 18 H 1.48496 * 109.46817 * 240.00120 * 15 13 11 19 19 C 1.38376 * 120.30421 * 359.97438 * 9 8 6 20 20 C 1.37939 * 120.15009 * 0.04214 * 19 9 8 21 21 C 1.50696 * 120.07609 * 179.97438 * 20 19 9 22 22 H 1.09001 * 109.47413 * 300.00586 * 1 2 3 23 23 H 1.09004 * 109.46676 * 59.99984 * 1 2 3 24 24 H 1.08994 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 269.72200 * 7 6 5 26 26 H 1.09001 * 109.46980 * 149.72300 * 7 6 5 27 27 H 1.09004 * 109.47113 * 29.72281 * 7 6 5 28 28 H 1.07999 * 119.92721 * 180.27784 * 8 6 5 29 29 H 1.08998 * 109.47141 * 210.00081 * 10 9 8 30 30 H 1.08998 * 109.46931 * 329.99721 * 10 9 8 31 31 H 0.96996 * 120.00194 * 179.97438 * 14 13 11 32 32 H 1.08005 * 119.92073 * 180.02562 * 19 9 8 33 33 H 1.09007 * 109.46919 * 90.00389 * 21 20 19 34 34 H 1.09007 * 109.47243 * 209.99772 * 21 20 19 35 35 H 1.08994 * 109.47430 * 330.00128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.2387 1.3144 1.2082 7 6 3.4909 1.2749 2.5160 8 6 5.6166 1.3811 1.2015 9 6 6.3047 1.4168 0.0017 10 6 7.8100 1.4892 0.0022 11 6 8.3800 0.0942 -0.0007 12 1 7.7184 -0.7594 -0.0023 13 6 9.7461 -0.0923 -0.0003 14 7 10.5518 0.9472 0.0032 15 14 10.4527 -1.8216 -0.0032 16 1 9.3439 -2.8093 -0.0064 17 1 11.2887 -2.0126 -1.2155 18 1 11.2871 -2.0173 1.2094 19 6 5.6172 1.3853 -1.1988 20 6 4.2394 1.3189 -1.2066 21 6 3.4924 1.2852 -2.5149 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.2608 2.2918 2.8338 26 1 4.1070 0.7885 3.2723 27 1 2.5640 0.7157 2.3878 28 1 6.1594 1.4052 2.1348 29 1 8.1485 2.0218 -0.8865 30 1 8.1480 2.0180 0.8934 31 1 11.5128 0.8159 0.0039 32 1 6.1607 1.4131 -2.1317 33 1 3.3617 0.2506 -2.8322 34 1 2.5157 1.7523 -2.3878 35 1 4.0592 1.8283 -3.2711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057484.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:52 Heat of formation + Delta-G solvation = -99.992691 kcal Electronic energy + Delta-G solvation = -17639.005762 eV Core-core repulsion = 14793.552561 eV Total energy + Delta-G solvation = -2845.453201 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82948 -40.11978 -37.49983 -35.73421 -34.63081 -33.75697 -29.87867 -29.27263 -27.95937 -27.66189 -25.68304 -23.18443 -21.81012 -21.09350 -18.94615 -18.50152 -18.11040 -17.76616 -16.67000 -16.29666 -15.62391 -15.22183 -15.03792 -14.41101 -14.27470 -14.22217 -14.10466 -13.98136 -13.73179 -13.45020 -13.23205 -13.03138 -12.89340 -12.53091 -12.50776 -12.35268 -11.95047 -11.85613 -11.84297 -11.46461 -11.34627 -10.60548 -9.55125 -9.54586 -8.20657 -6.33287 0.13666 0.39744 0.94219 1.41188 1.42336 1.55318 1.72484 2.39705 2.72067 3.11518 3.67783 3.79617 3.81330 4.01231 4.28531 4.31005 4.35555 4.42324 4.46704 4.64781 4.67916 4.68974 4.75401 4.77829 4.81007 5.05038 5.11096 5.19460 5.34383 5.35085 5.41076 5.50127 5.74008 5.94512 5.96131 6.17244 6.56933 6.79072 7.35585 8.89415 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.005180 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.920818 B = 5404.419067 C = 5474.296527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.357 6.357 3 C 0.538 3.462 4 O -0.524 6.524 5 C -0.156 4.156 6 C -0.044 4.044 7 C -0.115 4.115 8 C -0.138 4.138 9 C -0.028 4.028 10 C 0.053 3.947 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.964 3.036 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.138 4.138 20 C -0.044 4.044 21 C -0.115 4.115 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.134 0.866 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.130 0.870 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.813 -2.479 -0.011 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.273 6.273 3 C 0.382 3.618 4 O -0.414 6.414 5 C -0.158 4.158 6 C -0.044 4.044 7 C -0.171 4.171 8 C -0.156 4.156 9 C -0.028 4.028 10 C 0.016 3.984 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.789 3.211 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.156 4.156 20 C -0.044 4.044 21 C -0.172 4.172 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.152 0.848 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.148 0.852 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.893 -2.151 -0.010 18.022 hybrid contribution 0.762 -0.417 0.001 0.869 sum -17.131 -2.568 -0.010 17.322 Atomic orbital electron populations 1.23675 0.74252 1.06048 1.02996 1.86703 1.25407 1.31871 1.83336 1.21111 0.88648 0.81592 0.70404 1.90811 1.67082 1.36927 1.46586 1.18849 0.89064 1.13025 0.94813 1.20021 0.93375 0.96344 0.94660 1.20908 0.99675 1.03391 0.93147 1.20911 0.92871 1.03588 0.98268 1.20658 0.97119 0.91525 0.93522 1.18183 0.86917 0.96713 0.96540 1.21349 0.91783 0.92281 1.51100 0.92600 1.25875 0.97450 1.01225 0.94511 1.70075 1.03889 1.31682 1.51207 0.85405 0.78376 0.79418 0.77925 1.18928 1.20225 1.20220 1.20915 0.92869 1.03598 0.98259 1.20020 0.93374 0.96323 0.94669 1.20907 0.99292 1.03884 0.93082 0.91444 0.91458 0.84785 0.89769 0.89114 0.91503 0.85228 0.97167 0.97175 0.92524 0.85218 0.89117 0.91991 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -9.29 10.58 -56.16 -0.59 -9.88 16 3 C 0.54 16.57 4.33 70.33 0.30 16.87 16 4 O -0.52 -17.76 16.89 19.92 0.34 -17.42 16 5 C -0.16 -5.33 5.75 -20.10 -0.12 -5.45 16 6 C -0.04 -1.49 5.91 -19.60 -0.12 -1.60 16 7 C -0.11 -2.99 9.63 71.24 0.69 -2.31 16 8 C -0.14 -5.38 9.34 22.23 0.21 -5.17 16 9 C -0.03 -1.23 5.08 -19.80 -0.10 -1.33 16 10 C 0.05 2.79 5.10 29.10 0.15 2.93 16 11 C -0.53 -29.41 9.09 25.60 0.23 -29.17 16 12 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 15 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 C -0.14 -5.38 9.34 22.23 0.21 -5.17 16 20 C -0.04 -1.48 5.91 -19.60 -0.12 -1.60 16 21 C -0.12 -3.00 9.61 71.23 0.68 -2.32 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 27 H 0.07 1.62 7.07 -2.38 -0.02 1.61 16 28 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 29 H 0.01 0.56 8.08 -2.39 -0.02 0.54 16 30 H 0.01 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 1.58 7.09 -2.38 -0.02 1.56 16 35 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 Total: -1.00 -66.30 306.09 6.81 -59.49 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.07 Total: 8.75 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.68 Total: -31.84 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.28 Total: -54.56 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.26 Total: -27.30 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.30 6.81 -59.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057484.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.503 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds