Wall clock time and date at job start Mon Mar 30 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37943 * 120.07820 * 2 1 4 4 C 1.38359 * 120.14871 * 180.29791 * 3 2 1 5 5 C 1.50711 * 119.85047 * 179.74563 * 4 3 2 6 6 C 1.53002 * 109.47152 * 269.98119 * 5 4 3 7 7 C 1.50697 * 109.47005 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99842 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99700 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00112 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99867 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46972 * 89.99623 * 11 9 7 13 13 H 1.48496 * 109.47127 * 210.00145 * 11 9 7 14 14 H 1.48501 * 109.46885 * 330.00148 * 11 9 7 15 15 C 1.38373 * 120.30660 * 359.72954 * 4 3 2 16 16 C 1.37944 * 120.14728 * 0.02562 * 15 4 3 17 17 C 1.50699 * 120.07854 * 180.02562 * 16 15 4 18 18 C 1.39624 * 120.07176 * 179.77460 * 2 1 3 19 19 C 1.47725 * 120.15315 * 359.96906 * 18 2 1 20 20 O 1.21473 * 120.00289 * 269.73264 * 19 18 2 21 21 O 1.34710 * 119.99570 * 89.45214 * 19 18 2 22 22 H 1.08998 * 109.46816 * 270.23419 * 1 2 3 23 23 H 1.09007 * 109.46974 * 30.22741 * 1 2 3 24 24 H 1.08991 * 109.47371 * 150.22817 * 1 2 3 25 25 H 1.08004 * 119.92393 * 0.02949 * 3 2 1 26 26 H 1.08994 * 109.46441 * 29.98041 * 5 4 3 27 27 H 1.08997 * 109.47029 * 149.98209 * 5 4 3 28 28 H 1.08997 * 109.46877 * 299.99900 * 6 5 4 29 29 H 1.09002 * 109.47078 * 59.99644 * 6 5 4 30 30 H 0.97001 * 119.99851 * 180.02562 * 10 9 7 31 31 H 1.07997 * 119.92693 * 180.02562 * 15 4 3 32 32 H 1.09000 * 109.46597 * 269.98238 * 17 16 15 33 33 H 1.09002 * 109.47000 * 29.97556 * 17 16 15 34 34 H 1.09000 * 109.47337 * 149.97637 * 17 16 15 35 35 H 0.96708 * 116.99875 * 180.27167 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1937 0.0000 4 6 3.5820 1.1954 -0.0062 5 6 4.3305 2.5035 -0.0120 6 6 4.5777 2.9433 -1.4564 7 6 5.3256 4.2515 -1.4621 8 1 5.5977 4.7220 -0.5289 9 6 5.6624 4.8478 -2.6588 10 7 5.3305 4.2750 -3.7952 11 14 6.5901 6.4692 -2.6660 12 1 8.0511 6.2034 -2.6722 13 1 6.2227 7.2443 -3.8781 14 1 6.2340 7.2485 -1.4531 15 6 4.2817 0.0016 -0.0068 16 6 3.6030 -1.1993 -0.0018 17 6 4.3666 -2.4984 -0.0019 18 6 2.2067 -1.2083 0.0048 19 6 1.4731 -2.4905 0.0105 20 8 1.1762 -3.0157 1.0648 21 8 1.1284 -3.0744 -1.1535 22 1 -0.3633 0.0042 1.0277 23 1 -0.3633 0.8880 -0.5174 24 1 -0.3633 -0.8919 -0.5102 25 1 1.6584 2.1290 0.0005 26 1 3.7406 3.2617 0.5028 27 1 5.2855 2.3778 0.4981 28 1 5.1676 2.1849 -1.9712 29 1 3.6226 3.0688 -1.9665 30 1 5.5678 4.6944 -4.6371 31 1 5.3617 0.0101 -0.0113 32 1 4.5466 -2.8139 -1.0296 33 1 5.3201 -2.3595 0.5077 34 1 3.7856 -3.2615 0.5161 35 1 0.6457 -3.9107 -1.0992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060373.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:09 Heat of formation + Delta-G solvation = -97.630048 kcal Electronic energy + Delta-G solvation = -17389.450963 eV Core-core repulsion = 14544.100214 eV Total energy + Delta-G solvation = -2845.350749 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61094 -38.88598 -36.10745 -34.49911 -33.56779 -32.51248 -29.64891 -27.88402 -26.60560 -25.64945 -23.16952 -21.35121 -20.74400 -19.60575 -18.20006 -17.18461 -16.40432 -16.37018 -14.66155 -14.58167 -14.49210 -14.13095 -13.89221 -13.23035 -13.07559 -13.03404 -12.72425 -12.65009 -12.43167 -11.88840 -11.73015 -11.64699 -11.46574 -11.02465 -10.98419 -10.86966 -10.61356 -10.42914 -9.89076 -9.66856 -9.15269 -8.43864 -8.36567 -8.25742 -6.03023 -4.06534 1.29317 1.54631 2.05259 3.04335 3.30184 3.36720 3.39715 3.84755 4.43411 4.74281 4.85422 5.06048 5.18011 5.32710 5.33583 5.50969 5.55940 5.58208 5.60942 5.77396 5.82043 5.83405 6.08607 6.13875 6.29966 6.40560 6.54000 6.56728 6.63734 6.89468 6.97525 7.18674 7.63104 7.75306 7.78205 7.95915 8.35835 9.00278 9.57899 11.07936 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.037341 B = 0.004509 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.661817 B = 6208.476448 C = 6408.610585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.041 4.041 3 C -0.126 4.126 4 C -0.023 4.023 5 C -0.084 4.084 6 C 0.030 3.970 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.127 4.127 16 C -0.041 4.041 17 C -0.121 4.121 18 C -0.138 4.138 19 C 0.544 3.456 20 O -0.512 6.512 21 O -0.508 6.508 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.261 0.739 31 H 0.131 0.869 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -12.458 6.346 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.041 4.041 3 C -0.144 4.144 4 C -0.023 4.023 5 C -0.122 4.122 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.144 4.144 16 C -0.041 4.041 17 C -0.177 4.177 18 C -0.139 4.139 19 C 0.387 3.613 20 O -0.401 6.401 21 O -0.319 6.319 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.149 0.851 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.985 -12.209 6.419 15.461 hybrid contribution 0.199 0.322 -0.168 0.414 sum -6.786 -11.887 6.250 15.047 Atomic orbital electron populations 1.20876 0.91036 1.03096 1.02603 1.19720 0.95662 0.91485 0.97279 1.20880 0.93916 0.97008 1.02635 1.20594 0.93684 0.96560 0.91478 1.20943 0.98223 0.90888 1.02111 1.19079 0.97186 0.96073 0.88350 1.21231 1.36362 1.06213 0.92383 0.92535 1.25017 0.96006 0.97659 0.95646 1.69970 1.46740 1.39251 0.97300 0.86590 0.80129 0.83726 0.77542 1.20640 1.21213 1.19837 1.20885 1.00240 0.90688 1.02635 1.19722 0.91131 0.96027 0.97265 1.20884 1.00243 0.93774 1.02825 1.18549 0.92945 0.89545 1.12820 1.21115 0.74884 0.84332 0.80934 1.90885 1.52034 1.64290 1.32849 1.84772 1.70485 1.40996 1.35685 0.90731 0.90393 0.92049 0.85132 0.91789 0.91793 0.96311 0.96297 0.92934 0.85136 0.90425 0.90584 0.92071 0.73562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.62 36.01 0.35 -1.11 16 2 C -0.04 -0.63 5.91 -104.21 -0.62 -1.25 16 3 C -0.13 -2.08 9.34 -39.64 -0.37 -2.45 16 4 C -0.02 -0.41 5.14 -104.52 -0.54 -0.95 16 5 C -0.08 -1.68 5.28 -27.88 -0.15 -1.83 16 6 C 0.03 0.76 4.95 -27.88 -0.14 0.62 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 11 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 C -0.13 -2.08 9.34 -39.64 -0.37 -2.45 16 16 C -0.04 -0.63 5.92 -104.21 -0.62 -1.25 16 17 C -0.12 -1.47 9.62 36.01 0.35 -1.13 16 18 C -0.14 -2.14 5.75 -104.98 -0.60 -2.74 16 19 C 0.54 7.68 4.70 34.61 0.16 7.84 16 20 O -0.51 -8.20 17.89 -19.25 -0.34 -8.54 16 21 O -0.51 -5.65 13.44 -40.52 -0.54 -6.20 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 24 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 25 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 26 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.06 0.73 7.08 -51.93 -0.37 0.37 16 35 H 0.41 2.37 9.11 45.56 0.42 2.79 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -32.43 305.96 -7.60 -40.02 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.08 Total: -0.42 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.96 Total: -19.92 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.89 Total: -14.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.43 -7.60 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060373.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.605 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds