Wall clock time and date at job start Mon Mar 30 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47423 * 240.00195 * 3 2 1 5 5 H 1.48506 * 109.46763 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46978 * 120.00219 * 3 2 1 7 7 C 1.37879 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.38233 * 120.00109 * 269.72529 * 12 11 10 14 14 C 1.38238 * 119.99754 * 179.76611 * 13 12 11 15 15 C 1.38234 * 120.00016 * 0.50732 * 14 13 12 16 16 C 1.50696 * 120.00209 * 179.72225 * 15 14 13 17 17 C 1.50701 * 109.47191 * 270.02548 * 16 15 14 18 18 O 1.20821 * 120.00039 * 359.97438 * 17 16 15 19 19 O 1.34227 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.38238 * 120.00063 * 359.74632 * 15 14 13 21 21 C 1.38235 * 120.00108 * 0.02562 * 20 15 14 22 22 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47561 * 60.00082 * 9 7 2 24 24 H 1.09000 * 109.46976 * 299.99776 * 9 7 2 25 25 H 1.09000 * 109.47531 * 59.99538 * 10 9 7 26 26 H 1.09008 * 109.47250 * 300.00113 * 10 9 7 27 27 H 1.09000 * 109.46884 * 60.00289 * 11 10 9 28 28 H 1.09000 * 109.46955 * 299.99604 * 11 10 9 29 29 H 1.08004 * 119.99934 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.99924 * 180.23621 * 14 13 12 31 31 H 1.09003 * 109.47159 * 30.02324 * 16 15 14 32 32 H 1.08997 * 109.47406 * 150.02394 * 16 15 14 33 33 H 0.96699 * 117.00228 * 180.02562 * 19 17 16 34 34 H 1.08000 * 120.00578 * 179.97438 * 20 15 14 35 35 H 1.07999 * 120.00165 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 6 2.9034 -6.6617 -1.1979 14 6 3.8054 -7.7093 -1.1984 15 6 4.2554 -8.2345 -0.0016 16 6 5.2340 -9.3805 -0.0021 17 6 4.4796 -10.6852 -0.0015 18 8 3.2714 -10.6844 -0.0002 19 8 5.1500 -11.8480 -0.0013 20 6 3.8075 -7.7087 1.1959 21 6 2.9091 -6.6581 1.1965 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8894 26 1 2.8719 -3.6043 -0.8906 27 1 0.8533 -5.0451 -0.8897 28 1 0.8539 -5.0446 0.8904 29 1 2.5487 -6.2540 -2.1330 30 1 4.1552 -8.1202 -2.1340 31 1 5.8601 -9.3233 -0.8925 32 1 5.8612 -9.3232 0.8874 33 1 4.6229 -12.6587 -0.0013 34 1 4.1587 -8.1193 2.1310 35 1 2.5588 -6.2476 2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250064933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:17 Heat of formation + Delta-G solvation = -97.283653 kcal Electronic energy + Delta-G solvation = -16696.396050 eV Core-core repulsion = 13851.060321 eV Total energy + Delta-G solvation = -2845.335728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59705 -39.15325 -36.39579 -35.03119 -33.15753 -31.56872 -30.79861 -28.84253 -26.12547 -23.56911 -22.62074 -21.97143 -20.52523 -19.92000 -18.34798 -16.82045 -16.35462 -16.32250 -15.70413 -15.19460 -14.96017 -14.44511 -13.69755 -13.51081 -13.26691 -13.03239 -12.71186 -12.57164 -12.14034 -11.76036 -11.73672 -11.31122 -11.11946 -10.90747 -10.83315 -10.64590 -10.63897 -10.44757 -9.64169 -9.33029 -9.09428 -8.76174 -8.31918 -8.30451 -5.97126 -3.99411 1.37499 1.56776 1.97652 2.86575 3.35004 3.39123 3.41851 3.95766 4.42847 4.48348 4.69806 5.05220 5.10860 5.14454 5.20655 5.23605 5.38392 5.64019 5.67118 5.85395 6.04170 6.13175 6.20618 6.22763 6.44101 6.55220 6.58320 6.62973 6.93646 6.99139 7.11828 7.20534 7.64323 7.71032 7.86270 8.03502 8.46367 9.07738 9.64398 11.14202 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.060914 B = 0.003265 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.551333 B = 8572.524481 C = 8711.671307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.102 4.102 11 C -0.088 4.088 12 C -0.055 4.055 13 C -0.119 4.119 14 C -0.101 4.101 15 C -0.102 4.102 16 C -0.067 4.067 17 C 0.475 3.525 18 O -0.503 6.503 19 O -0.522 6.522 20 C -0.101 4.101 21 C -0.119 4.119 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.409 0.591 34 H 0.117 0.883 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.259 -21.101 -0.007 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.125 4.125 12 C -0.055 4.055 13 C -0.137 4.137 14 C -0.119 4.119 15 C -0.103 4.103 16 C -0.104 4.104 17 C 0.317 3.683 18 O -0.389 6.389 19 O -0.334 6.334 20 C -0.119 4.119 21 C -0.137 4.137 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.267 0.733 34 H 0.135 0.865 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.992 -20.612 -0.006 22.907 hybrid contribution 0.077 0.383 0.001 0.391 sum 10.069 -20.229 -0.005 22.597 Atomic orbital electron populations 1.69953 1.06052 1.26662 1.50932 1.25027 0.94844 0.99222 0.95396 0.86667 0.79590 0.83183 0.78613 1.20251 1.21301 1.20256 1.21240 0.93007 0.91152 1.50484 0.92783 1.19119 0.94017 0.91311 0.97216 1.21618 0.98963 0.92878 1.00491 1.20837 0.96196 0.92837 1.02615 1.20260 0.96659 0.95795 0.92826 1.21053 0.97883 0.96655 0.98093 1.20891 0.97421 0.96725 0.96824 1.19084 0.99931 0.97133 0.94111 1.20220 0.97280 0.86435 1.06470 1.23563 0.86974 0.85733 0.72079 1.90770 1.15791 1.87834 1.44520 1.84534 1.45690 1.17265 1.85959 1.20892 0.97465 0.96690 0.96818 1.21054 0.97898 0.96631 0.98101 0.92974 0.96597 0.96606 0.93319 0.93316 0.91330 0.91321 0.85856 0.86514 0.86916 0.86915 0.73250 0.86514 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.14 5.13 -26.73 -0.14 -2.27 16 11 C -0.09 -1.53 5.35 -27.88 -0.15 -1.68 16 12 C -0.06 -0.87 5.13 -104.62 -0.54 -1.41 16 13 C -0.12 -1.72 9.70 -39.58 -0.38 -2.10 16 14 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 15 C -0.10 -1.22 4.37 -104.63 -0.46 -1.67 16 16 C -0.07 -0.55 5.94 -29.04 -0.17 -0.72 16 17 C 0.47 4.62 8.32 36.01 0.30 4.92 16 18 O -0.50 -6.93 16.79 -18.75 -0.31 -7.25 16 19 O -0.52 -3.62 13.42 -39.25 -0.53 -4.14 16 20 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 21 C -0.12 -1.72 9.70 -39.58 -0.38 -2.10 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 28 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 29 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.11 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.11 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.41 1.27 9.10 45.56 0.41 1.68 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 309.25 15.07 4.66 4.66 Total: -1.00 -34.15 309.25 -7.89 -42.04 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.19 Total: -1.89 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -3.24 Total: -23.73 kcal Atomic # 7 Polarization: -27.30 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.84 Total: -11.39 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.15 -7.89 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.243 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds