Wall clock time and date at job start Mon Mar 30 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00285 * 2 1 4 4 H 1.48496 * 109.47423 * 240.00195 * 3 2 1 5 5 H 1.48506 * 109.46763 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46978 * 120.00219 * 3 2 1 7 7 C 1.37879 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47210 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47116 * 179.97438 * 11 10 9 13 13 C 1.38233 * 120.00109 * 269.72529 * 12 11 10 14 14 C 1.38238 * 119.99754 * 179.76611 * 13 12 11 15 15 C 1.38234 * 120.00016 * 0.50732 * 14 13 12 16 16 C 1.50696 * 120.00209 * 179.72225 * 15 14 13 17 17 C 1.50701 * 109.47191 * 270.02548 * 16 15 14 18 18 O 1.20821 * 120.00039 * 359.97438 * 17 16 15 19 19 O 1.34227 * 119.99787 * 180.02562 * 17 16 15 20 20 C 1.38238 * 120.00063 * 359.74632 * 15 14 13 21 21 C 1.38235 * 120.00108 * 0.02562 * 20 15 14 22 22 H 0.96998 * 119.99885 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47561 * 60.00082 * 9 7 2 24 24 H 1.09000 * 109.46976 * 299.99776 * 9 7 2 25 25 H 1.09000 * 109.47531 * 59.99538 * 10 9 7 26 26 H 1.09008 * 109.47250 * 300.00113 * 10 9 7 27 27 H 1.09000 * 109.46884 * 60.00289 * 11 10 9 28 28 H 1.09000 * 109.46955 * 299.99604 * 11 10 9 29 29 H 1.08004 * 119.99934 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.99924 * 180.23621 * 14 13 12 31 31 H 1.09003 * 109.47159 * 30.02324 * 16 15 14 32 32 H 1.08997 * 109.47406 * 150.02394 * 16 15 14 33 33 H 0.96699 * 117.00228 * 180.02562 * 19 17 16 34 34 H 1.08000 * 120.00578 * 179.97438 * 20 15 14 35 35 H 1.07999 * 120.00165 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 6 2.9034 -6.6617 -1.1979 14 6 3.8054 -7.7093 -1.1984 15 6 4.2554 -8.2345 -0.0016 16 6 5.2340 -9.3805 -0.0021 17 6 4.4796 -10.6852 -0.0015 18 8 3.2714 -10.6844 -0.0002 19 8 5.1500 -11.8480 -0.0013 20 6 3.8075 -7.7087 1.1959 21 6 2.9091 -6.6581 1.1965 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8894 26 1 2.8719 -3.6043 -0.8906 27 1 0.8533 -5.0451 -0.8897 28 1 0.8539 -5.0446 0.8904 29 1 2.5487 -6.2540 -2.1330 30 1 4.1552 -8.1202 -2.1340 31 1 5.8601 -9.3233 -0.8925 32 1 5.8612 -9.3232 0.8874 33 1 4.6229 -12.6587 -0.0013 34 1 4.1587 -8.1193 2.1310 35 1 2.5588 -6.2476 2.1320 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250064933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:17 Heat of formation + Delta-G solvation = -117.741582 kcal Electronic energy + Delta-G solvation = -16697.283172 eV Core-core repulsion = 13851.060321 eV Total energy + Delta-G solvation = -2846.222851 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36552 -40.13869 -37.13021 -36.55603 -34.87218 -33.10036 -31.80704 -30.24957 -27.66229 -25.19324 -23.63421 -23.03880 -21.97887 -21.21188 -19.03630 -18.49792 -17.53739 -17.12153 -16.80991 -16.48670 -16.29349 -15.94684 -15.24072 -14.54005 -14.38513 -14.25943 -14.14785 -13.65303 -13.36680 -13.22843 -12.98405 -12.57721 -12.57458 -12.46538 -12.38068 -12.12636 -11.87000 -11.60912 -11.43591 -11.32513 -11.10554 -10.55312 -9.78393 -9.43218 -8.19968 -6.31674 0.35992 0.54263 1.27660 1.39455 1.42983 1.50990 2.22098 2.41100 2.96656 3.12594 3.63605 3.89179 3.99847 4.15504 4.18810 4.45150 4.51643 4.55237 4.60634 4.64651 4.75766 4.76148 4.97866 5.15042 5.19871 5.22474 5.26265 5.50994 5.53827 5.61115 5.67609 5.70333 5.85172 5.85485 6.13347 6.25704 6.85130 7.05116 7.37522 8.91656 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.060914 B = 0.003265 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.551333 B = 8572.524481 C = 8711.671307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.077 4.077 12 C -0.081 4.081 13 C -0.133 4.133 14 C -0.106 4.106 15 C -0.098 4.098 16 C -0.066 4.066 17 C 0.483 3.517 18 O -0.552 6.552 19 O -0.513 6.513 20 C -0.106 4.106 21 C -0.133 4.133 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.426 0.574 34 H 0.142 0.858 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 -22.176 -0.008 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.124 4.124 15 C -0.098 4.098 16 C -0.103 4.103 17 C 0.327 3.673 18 O -0.442 6.442 19 O -0.326 6.326 20 C -0.124 4.124 21 C -0.151 4.151 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.288 0.712 34 H 0.160 0.840 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.592 -21.725 -0.008 25.110 hybrid contribution -0.694 0.590 0.001 0.911 sum 11.898 -21.134 -0.007 24.253 Atomic orbital electron populations 1.70091 1.07847 1.27879 1.51644 1.26012 0.95799 1.03448 0.94678 0.85491 0.78289 0.77969 0.79252 1.19093 1.20722 1.19102 1.21692 0.93528 0.92493 1.50660 0.92290 1.19036 0.94446 0.93091 0.94821 1.21371 0.97786 0.92801 1.00401 1.20616 0.96356 0.92142 1.02326 1.20092 0.97648 0.96232 0.94139 1.21210 0.98628 0.97528 0.97715 1.21230 0.96721 0.95994 0.98471 1.19507 0.99446 0.97451 0.93397 1.20338 0.96533 0.84178 1.09221 1.23734 0.86231 0.86690 0.70626 1.90772 1.17851 1.88530 1.47083 1.84491 1.45538 1.17495 1.85116 1.21230 0.96769 0.95956 0.98463 1.21210 0.98638 0.97509 0.97723 0.92724 0.98991 0.99000 0.93287 0.93285 0.91651 0.91644 0.85681 0.84015 0.84142 0.84144 0.71232 0.84016 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.71 5.13 30.59 0.16 -3.55 16 11 C -0.08 -2.80 5.35 29.85 0.16 -2.64 16 12 C -0.08 -2.57 5.13 -19.86 -0.10 -2.67 16 13 C -0.13 -3.79 9.70 22.27 0.22 -3.57 16 14 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 15 C -0.10 -2.07 4.37 -19.87 -0.09 -2.16 16 16 C -0.07 -0.83 5.94 29.10 0.17 -0.66 16 17 C 0.48 7.99 8.32 71.24 0.59 8.58 16 18 O -0.55 -14.33 16.79 21.98 0.37 -13.96 16 19 O -0.51 -5.41 13.42 -51.38 -0.69 -6.10 16 20 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 21 C -0.13 -3.79 9.70 22.27 0.22 -3.57 16 22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 2.36 8.08 -2.39 -0.02 2.34 16 28 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 29 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.14 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.14 1.06 8.09 -2.39 -0.02 1.05 16 33 H 0.43 1.43 9.10 -74.06 -0.67 0.75 16 34 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 35 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -74.88 309.25 5.00 -69.88 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.40 Total: 5.82 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 2.60 Total: -44.81 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.28 Total: -57.82 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.32 Total: -20.06 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.88 5.00 -69.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250064933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.863 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds