Wall clock time and date at job start Mon Mar 30 2020 18:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37966 * 120.07781 * 2 1 4 4 C 1.38346 * 120.15657 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.84973 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46991 * 90.00247 * 5 4 3 7 7 C 1.52998 * 109.46761 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47110 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99595 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00198 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99927 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99936 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47271 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47542 * 119.99637 * 12 10 8 15 15 H 1.48499 * 109.46730 * 239.99809 * 12 10 8 16 16 C 1.38389 * 120.30078 * 0.29711 * 4 3 2 17 17 C 1.37932 * 120.14921 * 359.45295 * 16 4 3 18 18 C 1.39615 * 120.07919 * 179.97438 * 2 1 3 19 19 C 1.47720 * 120.14855 * 0.02562 * 18 2 1 20 20 O 1.21476 * 119.99906 * 6.24187 * 19 18 2 21 21 O 1.34706 * 120.00113 * 186.25190 * 19 18 2 22 22 H 1.09003 * 109.47147 * 96.58064 * 1 2 3 23 23 H 1.09003 * 109.47256 * 216.57883 * 1 2 3 24 24 H 1.09001 * 109.47477 * 336.57984 * 1 2 3 25 25 H 1.08008 * 119.91945 * 359.97438 * 3 2 1 26 26 H 1.08993 * 109.47339 * 330.00228 * 5 4 3 27 27 H 1.09005 * 109.46791 * 210.00055 * 5 4 3 28 28 H 1.09003 * 109.47005 * 59.99803 * 6 5 4 29 29 H 1.08992 * 109.47465 * 299.99806 * 6 5 4 30 30 H 1.09003 * 109.47253 * 60.00284 * 7 6 5 31 31 H 1.09002 * 109.47508 * 299.99508 * 7 6 5 32 32 H 0.96997 * 119.99538 * 179.97438 * 11 10 8 33 33 H 1.07993 * 119.92870 * 179.72393 * 16 4 3 34 34 H 1.07997 * 120.07841 * 180.27300 * 17 16 4 35 35 H 0.96698 * 117.00492 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1939 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.3301 2.5039 0.0011 6 6 4.5828 2.9462 1.4438 7 6 5.3430 4.2739 1.4444 8 6 5.5926 4.7093 2.8654 9 1 5.2434 4.1001 3.6860 10 6 6.2656 5.8859 3.1178 11 7 6.6904 6.6279 2.1185 12 14 6.5755 6.4252 4.8793 13 1 6.0020 5.4222 5.8122 14 1 8.0376 6.5391 5.1122 15 1 5.9327 7.7431 5.1137 16 6 4.2817 0.0019 -0.0051 17 6 3.6031 -1.1989 0.0000 18 6 2.2067 -1.2081 0.0005 19 6 1.4731 -2.4904 0.0005 20 8 0.2638 -2.4983 -0.1143 21 8 2.1452 -3.6508 0.1281 22 1 -0.3633 -0.1178 -1.0209 23 1 -0.3634 -0.8253 0.6124 24 1 -0.3634 0.9430 0.4085 25 1 1.6583 2.1292 -0.0004 26 1 3.7382 3.2613 -0.5127 27 1 5.2832 2.3774 -0.5124 28 1 5.1747 2.1887 1.9577 29 1 3.6298 3.0726 1.9574 30 1 4.7515 5.0316 0.9304 31 1 6.2962 4.1471 0.9310 32 1 7.1636 7.4558 2.2962 33 1 5.3616 0.0104 -0.0092 34 1 4.1505 -2.1299 0.0001 35 1 1.6221 -4.4640 0.1230 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:29 Heat of formation + Delta-G solvation = -94.972424 kcal Electronic energy + Delta-G solvation = -16952.189131 eV Core-core repulsion = 14106.953625 eV Total energy + Delta-G solvation = -2845.235506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66485 -38.98269 -36.35975 -34.95700 -32.97910 -32.29052 -30.68738 -27.37677 -27.14258 -24.35530 -22.56616 -22.20543 -20.54054 -19.87921 -18.25202 -17.31716 -16.31482 -15.89182 -15.52290 -14.95499 -14.52381 -14.41917 -13.78795 -13.64790 -13.29949 -13.08847 -12.62842 -12.39953 -12.34624 -11.76456 -11.64873 -11.50541 -11.43072 -11.04468 -10.76789 -10.70702 -10.52111 -10.23740 -9.72542 -9.42848 -9.13671 -8.79788 -8.59226 -8.36259 -6.01233 -4.03494 0.68107 1.35727 2.46881 2.89408 3.30422 3.38046 3.42404 3.72918 4.45366 4.70238 4.77315 4.92145 5.02168 5.33070 5.34754 5.41070 5.58848 5.68462 5.69632 5.76628 5.95706 5.98782 6.09240 6.22551 6.30498 6.37102 6.46970 6.51031 6.81010 6.83390 6.88726 7.09401 7.66258 7.74927 7.79674 7.98853 8.41532 9.03895 9.60852 11.10089 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.039814 B = 0.003674 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.108154 B = 7619.946797 C = 7662.618946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.014 4.014 3 C -0.137 4.137 4 C -0.018 4.018 5 C -0.092 4.092 6 C -0.103 4.103 7 C 0.020 3.980 8 C -0.520 4.520 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.142 4.142 17 C -0.054 4.054 18 C -0.155 4.155 19 C 0.528 3.472 20 O -0.515 6.515 21 O -0.515 6.515 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.133 0.867 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.017 0.983 32 H 0.260 0.740 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.706 -16.879 -6.086 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.015 4.015 3 C -0.155 4.155 4 C -0.018 4.018 5 C -0.130 4.130 6 C -0.140 4.140 7 C -0.017 4.017 8 C -0.558 4.558 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.160 4.160 17 C -0.072 4.072 18 C -0.156 4.156 19 C 0.374 3.626 20 O -0.406 6.406 21 O -0.326 6.326 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.706 -16.359 -6.149 19.525 hybrid contribution -0.027 -0.152 0.952 0.964 sum -8.733 -16.511 -5.198 19.388 Atomic orbital electron populations 1.21107 0.90171 1.03250 1.03363 1.19986 0.96576 0.91271 0.93624 1.20987 0.93767 0.97387 1.03312 1.20555 0.93752 0.96304 0.91200 1.20945 0.99481 0.92066 1.00473 1.21634 1.00493 1.00039 0.91856 1.19131 0.95051 0.90443 0.97072 1.21300 1.35854 1.06098 0.92590 0.92654 1.25026 0.95777 0.96659 0.97023 1.69973 1.38936 1.14050 1.30571 0.86550 0.77901 0.78552 0.85101 1.19737 1.21003 1.21010 1.21108 1.00599 0.91435 1.02873 1.21378 0.92529 0.98827 0.94508 1.18768 0.93640 0.89498 1.13713 1.20993 0.85341 0.84237 0.71996 1.90830 1.15370 1.87655 1.46758 1.84580 1.45464 1.17164 1.85409 0.90684 0.89215 0.91827 0.84920 0.90878 0.90838 0.93136 0.93152 0.96519 0.96512 0.93062 0.85028 0.84792 0.73104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.73 36.00 0.31 -1.12 16 2 C -0.01 -0.19 5.91 -104.21 -0.62 -0.80 16 3 C -0.14 -1.85 9.31 -39.64 -0.37 -2.22 16 4 C -0.02 -0.26 5.14 -104.53 -0.54 -0.79 16 5 C -0.09 -1.48 5.34 -27.88 -0.15 -1.63 16 6 C -0.10 -2.04 5.14 -26.73 -0.14 -2.18 16 7 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 8 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 9 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 C -0.14 -1.84 9.68 -39.64 -0.38 -2.22 16 17 C -0.05 -0.65 9.62 -39.17 -0.38 -1.03 16 18 C -0.16 -2.00 5.87 -104.98 -0.62 -2.61 16 19 C 0.53 6.31 8.20 34.60 0.28 6.59 16 20 O -0.52 -7.02 14.13 -19.25 -0.27 -7.29 16 21 O -0.51 -4.53 12.70 -40.51 -0.51 -5.05 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.13 5.86 -51.93 -0.30 0.83 16 24 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 25 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 26 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 27 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.34 7.63 -52.49 -0.40 0.94 16 35 H 0.41 1.67 9.11 45.56 0.42 2.09 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -32.01 303.14 -7.69 -39.70 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.05 Total: -1.34 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.14 Total: -21.11 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.79 Total: -12.34 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.01 -7.69 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.277 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds