Wall clock time and date at job start Mon Mar 30 2020 18:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38393 * 119.92485 * 2 1 4 4 C 1.38345 * 120.30214 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.92391 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47202 * 89.99584 * 5 4 3 7 7 C 1.52991 * 109.47300 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47557 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99582 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00512 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00068 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99973 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47212 * 60.00110 * 12 10 8 14 14 H 1.48503 * 109.46838 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46897 * 299.99578 * 12 10 8 16 16 C 1.37961 * 120.15100 * 359.97438 * 4 3 2 17 17 C 1.39611 * 119.84777 * 0.02562 * 16 4 3 18 18 C 1.47726 * 120.14971 * 179.97438 * 17 16 4 19 19 O 1.21478 * 119.99965 * 0.02562 * 18 17 16 20 20 O 1.34709 * 120.00165 * 179.97438 * 18 17 16 21 21 C 1.37919 * 119.92475 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47431 * 89.99739 * 1 2 3 23 23 H 1.08999 * 109.46854 * 209.99954 * 1 2 3 24 24 H 1.09001 * 109.46806 * 329.99425 * 1 2 3 25 25 H 1.08001 * 119.84376 * 0.28327 * 3 2 1 26 26 H 1.08991 * 109.47184 * 210.00032 * 5 4 3 27 27 H 1.09010 * 109.46950 * 330.00100 * 5 4 3 28 28 H 1.09000 * 109.47163 * 300.00299 * 6 5 4 29 29 H 1.09004 * 109.46753 * 59.99919 * 6 5 4 30 30 H 1.09004 * 109.47175 * 300.00728 * 7 6 5 31 31 H 1.09004 * 109.47282 * 60.00245 * 7 6 5 32 32 H 0.97004 * 120.00186 * 179.97438 * 11 10 8 33 33 H 1.08000 * 120.07797 * 179.97438 * 16 4 3 34 34 H 0.96701 * 117.00130 * 180.02562 * 20 18 17 35 35 H 1.08002 * 120.07572 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2085 -0.0005 5 6 4.3240 2.5196 -0.0011 6 6 4.5760 2.9636 1.4412 7 6 5.3310 4.2943 1.4406 8 6 5.5797 4.7314 2.8612 9 1 5.2342 4.1209 3.6823 10 6 6.2484 5.9107 3.1126 11 7 6.6696 6.6539 2.1128 12 14 6.5573 6.4520 4.8736 13 1 7.3688 5.4234 5.5726 14 1 7.2900 7.7437 4.8730 15 1 5.2591 6.6191 5.5750 16 6 4.2816 0.0202 -0.0005 17 6 3.5915 -1.1935 -0.0005 18 6 4.3352 -2.4699 -0.0011 19 8 5.5500 -2.4651 -0.0011 20 8 3.6663 -3.6392 -0.0006 21 6 2.1951 -1.1953 -0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6537 2.1325 0.0046 26 1 5.2771 2.3967 -0.5152 27 1 3.7286 3.2744 -0.5149 28 1 3.6227 3.0865 1.9553 29 1 5.1712 2.2087 1.9550 30 1 6.2842 4.1709 0.9265 31 1 4.7361 5.0494 0.9267 32 1 7.1397 7.4837 2.2897 33 1 5.3616 0.0287 -0.0014 34 1 4.1962 -4.4481 -0.0006 35 1 1.6551 -2.1306 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:31 Heat of formation + Delta-G solvation = -119.372288 kcal Electronic energy + Delta-G solvation = -16915.658668 eV Core-core repulsion = 14069.365104 eV Total energy + Delta-G solvation = -2846.293564 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50960 -40.07250 -37.14085 -36.61789 -34.77050 -33.55939 -32.18333 -28.71369 -27.79254 -25.78815 -25.46427 -22.47944 -21.66467 -21.30801 -19.02957 -18.49704 -17.96235 -16.98076 -16.71133 -16.63741 -16.53305 -15.36496 -15.03576 -14.72530 -14.46713 -14.20291 -14.08719 -13.81368 -13.26073 -13.03238 -12.96171 -12.65688 -12.64960 -12.61038 -12.45916 -12.32153 -12.09812 -11.71634 -11.45810 -11.32860 -11.14393 -10.54795 -9.90124 -9.60495 -8.19838 -6.31079 -0.34107 0.32499 1.39416 1.42605 1.48411 1.50600 2.01067 2.40986 2.71633 3.13008 3.68472 3.78951 4.00072 4.13767 4.22165 4.31588 4.46412 4.53788 4.61517 4.69450 4.83723 4.91805 4.99120 5.04293 5.17158 5.23452 5.25985 5.31021 5.50772 5.52475 5.53198 5.58604 5.77783 5.84933 5.90527 6.25834 6.85517 6.92965 7.38041 8.91643 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.004224 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.260018 B = 6627.926453 C = 7189.946414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.084 4.084 4 C -0.086 4.086 5 C -0.076 4.076 6 C -0.089 4.089 7 C 0.023 3.977 8 C -0.546 4.546 9 H 0.057 0.943 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.265 1.265 16 C -0.077 4.077 17 C -0.140 4.140 18 C 0.534 3.466 19 O -0.552 6.552 20 O -0.499 6.499 21 C -0.065 4.065 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.041 0.959 30 H -0.010 1.010 31 H -0.002 1.002 32 H 0.264 0.736 33 H 0.119 0.881 34 H 0.434 0.566 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 -18.245 -5.610 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.127 4.127 7 C -0.014 4.014 8 C -0.584 4.584 9 H 0.075 0.925 10 C -0.197 4.197 11 N -0.573 5.573 12 Si 0.788 3.212 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.095 4.095 17 C -0.141 4.141 18 C 0.380 3.620 19 O -0.445 6.445 20 O -0.312 6.312 21 C -0.083 4.083 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.161 0.839 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.016 0.984 32 H 0.073 0.927 33 H 0.137 0.863 34 H 0.296 0.704 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.450 -17.756 -5.651 22.981 hybrid contribution 1.278 0.142 0.718 1.473 sum -12.172 -17.614 -4.933 21.972 Atomic orbital electron populations 1.20862 0.87987 1.04176 1.03710 1.20245 0.98222 0.91840 0.99238 1.21527 0.92938 0.99404 0.96327 1.19917 0.94570 0.94399 0.99716 1.20621 0.99780 0.93340 0.97547 1.21406 0.99499 0.96854 0.94952 1.19037 0.94200 0.92738 0.95462 1.21685 1.36526 1.06388 0.93831 0.92469 1.25965 0.95303 0.96690 1.01755 1.70084 1.39663 1.14402 1.33146 0.85527 0.78727 0.77517 0.79451 1.19464 1.20654 1.18977 1.21135 1.00267 0.91092 0.96999 1.19080 0.94620 0.89714 1.10649 1.20931 0.84967 0.85050 0.71009 1.90892 1.16718 1.88668 1.48195 1.84496 1.44821 1.16870 1.85051 1.21526 0.91546 0.99635 0.95574 0.89588 0.89807 0.90671 0.83930 0.91717 0.90185 0.92699 0.93991 0.99149 0.98391 0.92732 0.86271 0.70431 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.65 16 2 C -0.10 -1.86 5.87 -19.90 -0.12 -1.98 16 3 C -0.08 -2.02 9.34 22.33 0.21 -1.81 16 4 C -0.09 -2.53 5.13 -19.90 -0.10 -2.63 16 5 C -0.08 -2.58 5.34 29.85 0.16 -2.42 16 6 C -0.09 -3.77 5.13 30.59 0.16 -3.61 16 7 C 0.02 1.22 4.97 29.84 0.15 1.37 16 8 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 9 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 10 C 0.00 0.04 5.46 84.65 0.46 0.50 16 11 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 12 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 16 C -0.08 -2.31 9.24 22.54 0.21 -2.10 16 17 C -0.14 -3.59 5.87 -20.10 -0.12 -3.71 16 18 C 0.53 13.32 8.27 70.33 0.58 13.91 16 19 O -0.55 -17.78 17.13 19.91 0.34 -17.44 16 20 O -0.50 -7.83 12.68 -56.19 -0.71 -8.54 16 21 C -0.06 -1.31 9.27 22.53 0.21 -1.10 16 22 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 23 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 24 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 25 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 26 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 27 H 0.08 2.56 8.08 -2.38 -0.02 2.54 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 30 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 31 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.12 3.91 7.65 -2.91 -0.02 3.89 16 34 H 0.43 2.77 9.11 -74.06 -0.67 2.10 16 35 H 0.16 2.33 7.61 -2.91 -0.02 2.30 16 Total: -1.00 -72.39 308.51 5.09 -67.29 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.41 Total: 4.86 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 2.74 Total: -35.88 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.28 Total: -57.27 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.37 Total: -25.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.39 5.09 -67.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.079 kcal (2) G-P(sol) polarization free energy of solvation -72.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds