Wall clock time and date at job start Mon Mar 30 2020 18:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00350 * 2 1 4 4 H 1.48502 * 109.47153 * 240.00039 * 3 2 1 5 5 H 1.48505 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47241 * 119.99779 * 3 2 1 7 7 C 1.37888 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47381 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47648 * 179.97438 * 11 10 9 13 13 C 1.37602 * 119.68165 * 90.00062 * 12 11 10 14 14 C 1.39230 * 119.91664 * 180.02562 * 13 12 11 15 15 N 1.37159 * 133.72508 * 180.02562 * 14 13 12 16 16 H 0.97010 * 125.94282 * 359.97438 * 15 14 13 17 17 N 1.40013 * 108.11326 * 179.97438 * 15 14 13 18 18 C 1.30127 * 109.76965 * 359.97438 * 17 15 14 19 19 C 1.40759 * 119.70182 * 0.26194 * 14 13 12 20 20 C 1.40231 * 119.55409 * 359.45234 * 19 14 13 21 21 F 1.35106 * 120.15999 * 180.28005 * 20 19 14 22 22 C 1.37647 * 119.67874 * 0.54967 * 20 19 14 23 23 H 0.97001 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47828 * 59.99636 * 9 7 2 25 25 H 1.09005 * 109.46638 * 299.99742 * 9 7 2 26 26 H 1.08999 * 109.47427 * 59.99907 * 10 9 7 27 27 H 1.08997 * 109.46959 * 299.99581 * 10 9 7 28 28 H 1.09004 * 109.46949 * 59.99676 * 11 10 9 29 29 H 1.08997 * 109.47133 * 299.99966 * 11 10 9 30 30 H 1.07998 * 120.04827 * 0.02562 * 13 12 11 31 31 H 1.08002 * 125.66712 * 179.97438 * 18 17 15 32 32 H 1.07995 * 119.74556 * 179.70774 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4593 -6.1327 0.0005 13 6 2.9029 -6.6505 1.1957 14 6 3.8080 -7.7085 1.2008 15 7 4.4218 -8.4262 2.1955 16 1 4.3067 -8.2911 3.1493 17 7 5.2436 -9.3876 1.5949 18 6 5.1600 -9.2911 0.3000 19 6 4.2682 -8.2386 -0.0192 20 6 3.8001 -7.7015 -1.2271 21 9 4.2294 -8.2046 -2.4052 22 6 2.9055 -6.6556 -1.2066 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6044 -0.8895 28 1 0.8531 -5.0451 -0.8886 29 1 0.8538 -5.0447 0.8914 30 1 2.5495 -6.2369 2.1287 31 1 5.6873 -9.9078 -0.4128 32 1 2.5479 -6.2381 -2.1362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:43 Heat of formation + Delta-G solvation = 15.775224 kcal Electronic energy + Delta-G solvation = -16714.040410 eV Core-core repulsion = 13782.439729 eV Total energy + Delta-G solvation = -2931.600682 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.95162 -41.50859 -37.77953 -34.35406 -32.54947 -32.21513 -29.96197 -29.38581 -26.83829 -23.90476 -22.91505 -21.86060 -21.34436 -20.12341 -18.18917 -17.18011 -16.30528 -16.21185 -15.84056 -15.50319 -14.80748 -14.65331 -14.50035 -13.96506 -13.64681 -13.10775 -12.64830 -12.38102 -11.79048 -11.62245 -11.36410 -11.34249 -11.06976 -10.77709 -10.65120 -10.53276 -10.39562 -9.72413 -9.41002 -9.14667 -8.56397 -8.35798 -8.04080 -6.01183 -4.03515 0.67630 1.31275 2.33133 2.50304 3.32810 3.37251 3.39835 3.53140 4.05555 4.44119 4.46521 4.54979 4.75389 4.83085 5.24065 5.34422 5.35575 5.60570 5.69448 5.92674 5.95214 6.01303 6.11370 6.30718 6.40282 6.73376 6.77632 6.82394 7.06483 7.09966 7.35481 7.65643 7.79443 7.98696 8.41309 9.03424 9.60681 11.10052 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.004071 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.396916 B = 6876.920520 C = 7111.841516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.088 4.088 12 C 0.015 3.985 13 C -0.159 4.159 14 C 0.160 3.840 15 N -0.506 5.506 16 H 0.443 0.557 17 N -0.258 5.258 18 C 0.086 3.914 19 C -0.227 4.227 20 C 0.173 3.827 21 F -0.134 7.134 22 C -0.184 4.184 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.194 0.806 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 -17.174 0.916 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.125 4.125 12 C 0.012 3.988 13 C -0.181 4.181 14 C 0.043 3.957 15 N -0.221 5.221 16 H 0.289 0.711 17 N -0.072 5.072 18 C -0.110 4.110 19 C -0.235 4.235 20 C 0.151 3.849 21 F -0.112 7.112 22 C -0.205 4.205 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.152 0.848 31 H 0.210 0.790 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.776 -17.735 1.882 19.079 hybrid contribution 0.148 1.375 -0.362 1.429 sum 6.924 -16.360 1.520 17.830 Atomic orbital electron populations 1.69948 1.06045 1.26720 1.50812 1.25015 0.94836 0.99220 0.95315 0.86672 0.79604 0.83170 0.78641 1.20219 1.21283 1.20274 1.21224 0.93022 0.91105 1.50670 0.92761 1.19118 0.93966 0.91222 0.97332 1.21649 0.99080 0.92564 1.00823 1.20913 0.95964 0.92270 1.03348 1.19829 0.94260 0.93937 0.90767 1.20000 1.01112 0.97595 0.99384 1.18623 0.95031 0.94168 0.87913 1.46054 1.38985 1.29008 1.08043 0.71143 1.76645 1.12120 1.09531 1.08900 1.23823 0.97432 0.96789 0.92918 1.18762 1.07760 1.04128 0.92873 1.17029 0.95143 0.93817 0.78933 1.91489 1.88275 1.86342 1.45128 1.20885 1.01328 0.98265 0.99982 0.92943 0.96464 0.96519 0.93129 0.93008 0.90549 0.90655 0.84805 0.78965 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -2.00 5.13 -26.73 -0.14 -2.14 16 11 C -0.09 -1.34 5.33 -27.88 -0.15 -1.49 16 12 C 0.02 0.21 5.13 -104.60 -0.54 -0.33 16 13 C -0.16 -2.03 9.70 -39.45 -0.38 -2.41 16 14 C 0.16 2.04 7.33 -84.16 -0.62 1.42 16 15 N -0.51 -5.66 7.44 32.36 0.24 -5.42 16 16 H 0.44 3.59 8.96 -182.65 -1.64 1.95 16 17 N -0.26 -3.12 12.57 30.88 0.39 -2.73 16 18 C 0.09 0.98 12.05 -16.99 -0.20 0.77 16 19 C -0.23 -2.94 6.16 -106.91 -0.66 -3.60 16 20 C 0.17 2.28 7.35 -39.05 -0.29 1.99 16 21 F -0.13 -1.71 17.28 2.25 0.04 -1.67 16 22 C -0.18 -2.46 9.63 -39.55 -0.38 -2.84 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 286.68 15.07 4.32 4.32 Total: -1.00 -31.02 286.68 -8.18 -39.19 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.98 Total: -2.71 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -3.90 Total: -21.59 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 1.37 Total: -34.00 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.02 -8.18 -39.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.969 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds