Wall clock time and date at job start Mon Mar 30 2020 18:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00350 * 2 1 4 4 H 1.48502 * 109.47153 * 240.00039 * 3 2 1 5 5 H 1.48505 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47241 * 119.99779 * 3 2 1 7 7 C 1.37888 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99671 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47381 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47648 * 179.97438 * 11 10 9 13 13 C 1.37602 * 119.68165 * 90.00062 * 12 11 10 14 14 C 1.39230 * 119.91664 * 180.02562 * 13 12 11 15 15 N 1.37159 * 133.72508 * 180.02562 * 14 13 12 16 16 H 0.97010 * 125.94282 * 359.97438 * 15 14 13 17 17 N 1.40013 * 108.11326 * 179.97438 * 15 14 13 18 18 C 1.30127 * 109.76965 * 359.97438 * 17 15 14 19 19 C 1.40759 * 119.70182 * 0.26194 * 14 13 12 20 20 C 1.40231 * 119.55409 * 359.45234 * 19 14 13 21 21 F 1.35106 * 120.15999 * 180.28005 * 20 19 14 22 22 C 1.37647 * 119.67874 * 0.54967 * 20 19 14 23 23 H 0.97001 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47828 * 59.99636 * 9 7 2 25 25 H 1.09005 * 109.46638 * 299.99742 * 9 7 2 26 26 H 1.08999 * 109.47427 * 59.99907 * 10 9 7 27 27 H 1.08997 * 109.46959 * 299.99581 * 10 9 7 28 28 H 1.09004 * 109.46949 * 59.99676 * 11 10 9 29 29 H 1.08997 * 109.47133 * 299.99966 * 11 10 9 30 30 H 1.07998 * 120.04827 * 0.02562 * 13 12 11 31 31 H 1.08002 * 125.66712 * 179.97438 * 18 17 15 32 32 H 1.07995 * 119.74556 * 179.70774 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4593 -6.1327 0.0005 13 6 2.9029 -6.6505 1.1957 14 6 3.8080 -7.7085 1.2008 15 7 4.4218 -8.4262 2.1955 16 1 4.3067 -8.2911 3.1493 17 7 5.2436 -9.3876 1.5949 18 6 5.1600 -9.2911 0.3000 19 6 4.2682 -8.2386 -0.0192 20 6 3.8001 -7.7015 -1.2271 21 9 4.2294 -8.2046 -2.4052 22 6 2.9055 -6.6556 -1.2066 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5572 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8905 27 1 2.8717 -3.6044 -0.8895 28 1 0.8531 -5.0451 -0.8886 29 1 0.8538 -5.0447 0.8914 30 1 2.5495 -6.2369 2.1287 31 1 5.6873 -9.9078 -0.4128 32 1 2.5479 -6.2381 -2.1362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:13:43 Heat of formation + Delta-G solvation = -1.758248 kcal Electronic energy + Delta-G solvation = -16714.800719 eV Core-core repulsion = 13782.439729 eV Total energy + Delta-G solvation = -2932.360990 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.94475 -42.44305 -38.85070 -36.04777 -34.18817 -33.30926 -31.36929 -30.38223 -28.40501 -25.56756 -23.92231 -22.92543 -22.54891 -21.65834 -19.19552 -18.44289 -18.05833 -17.31941 -16.82986 -16.51784 -16.46787 -15.69884 -15.59056 -15.44633 -14.83202 -14.30700 -14.20888 -14.02634 -13.06691 -12.96236 -12.89640 -12.74020 -12.50998 -12.34265 -12.09830 -12.01644 -11.41673 -11.30899 -11.29693 -11.11202 -10.51222 -9.63777 -9.00489 -8.17172 -6.27428 -0.31439 0.30898 1.41509 1.42320 1.44008 1.51977 1.65486 2.42758 2.52174 3.08016 3.16182 3.49472 3.63454 3.76747 3.85802 4.26656 4.29324 4.50564 4.54000 4.61121 4.81773 4.95323 4.99103 5.06959 5.23077 5.28198 5.31241 5.54567 5.57533 5.75044 5.83459 5.91669 6.23050 6.29877 6.49529 6.89960 7.41551 8.94070 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034974 B = 0.004071 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.396916 B = 6876.920520 C = 7111.841516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.090 4.090 11 C -0.076 4.076 12 C 0.005 3.995 13 C -0.153 4.153 14 C 0.152 3.848 15 N -0.499 5.499 16 H 0.455 0.545 17 N -0.270 5.270 18 C 0.088 3.912 19 C -0.238 4.238 20 C 0.169 3.831 21 F -0.133 7.133 22 C -0.191 4.191 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.003 1.003 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.223 0.777 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -17.718 1.183 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.128 4.128 11 C -0.113 4.113 12 C 0.001 3.999 13 C -0.175 4.175 14 C 0.033 3.967 15 N -0.215 5.215 16 H 0.303 0.697 17 N -0.084 5.084 18 C -0.108 4.108 19 C -0.247 4.247 20 C 0.147 3.853 21 F -0.111 7.111 22 C -0.211 4.211 23 H 0.072 0.928 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.167 0.833 31 H 0.240 0.760 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.062 -18.295 2.169 20.110 hybrid contribution -0.240 1.483 -0.430 1.562 sum 7.821 -16.812 1.739 18.624 Atomic orbital electron populations 1.70074 1.07661 1.27740 1.51768 1.25917 0.95722 1.03118 0.94861 0.85584 0.78358 0.78511 0.79107 1.19334 1.20854 1.19299 1.21709 0.93493 0.92649 1.50400 0.92474 1.19043 0.94470 0.92755 0.95225 1.21406 0.97911 0.92730 1.00739 1.20688 0.95961 0.90772 1.03924 1.19604 0.94714 0.94100 0.91448 1.20140 1.00507 0.97237 0.99649 1.18692 0.95221 0.94333 0.88410 1.46115 1.38389 1.28426 1.08581 0.69714 1.76639 1.12488 1.09885 1.09381 1.24335 0.96892 0.96446 0.93094 1.19027 1.08107 1.04651 0.92887 1.17025 0.95245 0.93870 0.79130 1.91489 1.88251 1.86301 1.45074 1.20975 1.01473 0.98466 1.00180 0.92812 0.98632 0.98503 0.92999 0.93195 0.90260 0.89980 0.83337 0.76022 0.83414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.09 -3.47 5.13 30.59 0.16 -3.32 16 11 C -0.08 -2.28 5.33 29.85 0.16 -2.12 16 12 C 0.00 0.12 5.13 -19.85 -0.10 0.02 16 13 C -0.15 -3.66 9.70 22.36 0.22 -3.44 16 14 C 0.15 3.59 7.33 39.16 0.29 3.87 16 15 N -0.50 -10.17 7.44 -51.54 -0.38 -10.56 16 16 H 0.45 6.49 8.96 -213.36 -1.91 4.58 16 17 N -0.27 -5.96 12.57 -56.23 -0.71 -6.67 16 18 C 0.09 1.79 12.05 85.77 1.03 2.83 16 19 C -0.24 -5.75 6.16 -21.35 -0.13 -5.88 16 20 C 0.17 4.22 7.35 22.61 0.17 4.39 16 21 F -0.13 -3.20 17.28 44.97 0.78 -2.42 16 22 C -0.19 -4.88 9.63 22.29 0.21 -4.66 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.00 -0.19 8.14 -2.38 -0.02 -0.20 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 2.31 8.08 -2.38 -0.02 2.29 16 29 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 30 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.22 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -65.44 286.68 4.07 -61.37 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -0.77 Total: 4.93 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.84 Total: -36.83 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -0.80 Total: -72.95 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.44 4.07 -61.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.614 kcal (2) G-P(sol) polarization free energy of solvation -65.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds