Wall clock time and date at job start Mon Mar 30 2020 18:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30865 * 125.41001 * 2 1 4 4 C 1.33308 * 109.69894 * 180.30910 * 3 2 1 5 5 C 1.36780 * 107.77750 * 359.72534 * 4 3 2 6 6 C 1.46634 * 126.85012 * 180.02562 * 5 4 3 7 7 O 1.21726 * 120.00151 * 203.58666 * 6 5 4 8 8 N 1.34780 * 119.99843 * 23.59224 * 6 5 4 9 9 C 1.36888 * 119.99980 * 186.04191 * 8 6 5 10 10 H 1.08006 * 119.99808 * 24.02401 * 9 8 6 11 11 C 1.39009 * 120.00302 * 204.03276 * 9 8 6 12 12 N 1.31398 * 119.99721 * 15.47755 * 11 9 8 13 13 Si 1.86796 * 120.00163 * 195.48352 * 11 9 8 14 14 H 1.48500 * 109.47080 * 89.99412 * 13 11 9 15 15 H 1.48495 * 109.47141 * 209.99703 * 13 11 9 16 16 H 1.48495 * 109.47184 * 329.99506 * 13 11 9 17 17 C 1.46495 * 120.00159 * 6.04354 * 8 6 5 18 18 C 1.47193 * 109.47353 * 53.73081 * 17 8 6 19 19 N 4.08842 * 132.14325 * 82.01028 * 2 1 3 20 20 N 1.34550 * 125.41384 * 179.83882 * 2 1 3 21 21 C 1.46498 * 126.47136 * 359.96555 * 20 2 1 22 22 H 1.09003 * 109.46785 * 270.15941 * 1 2 3 23 23 H 1.08996 * 109.47382 * 30.15745 * 1 2 3 24 24 H 1.09002 * 109.46947 * 150.16224 * 1 2 3 25 25 H 1.07998 * 126.11120 * 179.74728 * 4 3 2 26 26 H 0.97000 * 119.99670 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47583 * 173.73598 * 17 8 6 28 28 H 1.09011 * 109.46785 * 293.72957 * 17 8 6 29 29 H 1.08995 * 109.46984 * 275.11489 * 21 20 2 30 30 H 1.09002 * 109.46562 * 155.12477 * 21 20 2 31 31 H 1.09001 * 109.47394 * 35.12318 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5485 0.7056 -0.0068 5 6 3.5979 -0.6613 -0.0050 6 6 4.8022 -1.4978 -0.0101 7 8 4.7488 -2.6391 -0.4300 8 7 5.9683 -1.0030 0.4502 9 6 7.1175 -1.7373 0.3322 10 1 7.1981 -2.4949 -0.4333 11 6 8.1808 -1.5081 1.1979 12 7 7.9923 -0.8225 2.3028 13 14 9.8775 -2.1746 0.7902 14 1 10.6281 -1.1670 -0.0013 15 1 10.6116 -2.4627 2.0484 16 1 9.7416 -3.4241 -0.0007 17 6 6.0059 0.3206 1.0768 18 6 5.0147 0.3775 2.1635 19 7 4.2503 0.4214 3.0020 20 7 2.2867 -1.0966 0.0031 21 6 1.8312 -2.4889 0.0077 22 1 -0.3633 0.0029 1.0277 23 1 -0.3634 0.8885 -0.5162 24 1 -0.3633 -0.8915 -0.5113 25 1 4.3975 1.3732 -0.0123 26 1 8.7343 -0.6623 2.9067 27 1 7.0011 0.5024 1.4828 28 1 5.7729 1.0819 0.3322 29 1 1.6317 -2.8025 1.0323 30 1 2.6042 -3.1254 -0.4230 31 1 0.9191 -2.5748 -0.5828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262154108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:04 Heat of formation + Delta-G solvation = 79.629910 kcal Electronic energy + Delta-G solvation = -18196.711075 eV Core-core repulsion = 15287.799302 eV Total energy + Delta-G solvation = -2908.911773 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79304 -38.60238 -36.03328 -34.63674 -33.60462 -32.15853 -31.30959 -28.03793 -27.36989 -26.30555 -24.79977 -21.92151 -20.25236 -19.06149 -17.88084 -17.18015 -16.11927 -15.86770 -15.56587 -14.95464 -14.21162 -13.91919 -13.64025 -13.27559 -13.11947 -13.05538 -12.72805 -12.29081 -12.17108 -12.04362 -11.99991 -11.77021 -11.52686 -11.27061 -10.72194 -10.47579 -10.34117 -9.78759 -9.44017 -9.24763 -8.82041 -8.03479 -7.86684 -6.56135 -4.19660 1.94997 2.92887 3.07760 3.16875 3.21478 3.32193 3.50050 3.74490 3.99233 4.09107 4.64260 4.69352 4.82448 5.00651 5.05035 5.14474 5.38218 5.51175 5.56221 5.58930 5.80900 5.86093 5.99216 6.23655 6.60158 6.77278 7.00707 7.34196 7.49465 7.80688 8.17135 8.37891 8.48446 8.82439 9.02407 9.58473 10.42107 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.007447 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.115220 B = 3759.091373 C = 4197.611201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.199 3.801 3 N -0.491 5.491 4 C -0.003 4.003 5 C -0.046 4.046 6 C 0.521 3.479 7 O -0.577 6.577 8 N -0.420 5.420 9 C -0.295 4.295 10 H 0.110 0.890 11 C 0.026 3.974 12 N -0.874 5.874 13 Si 0.938 3.062 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.268 1.268 17 C 0.173 3.827 18 C 0.227 3.773 19 N -0.459 5.459 20 N -0.426 5.426 21 C 0.065 3.935 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.182 0.818 26 H 0.277 0.723 27 H 0.175 0.825 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 1.750 -4.328 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 N -0.210 5.210 4 C -0.155 4.155 5 C -0.164 4.164 6 C 0.310 3.690 7 O -0.462 6.462 8 N -0.138 5.138 9 C -0.422 4.422 10 H 0.128 0.872 11 C -0.176 4.176 12 N -0.514 5.514 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.192 1.192 17 C 0.047 3.953 18 C -0.091 4.091 19 N -0.139 5.139 20 N -0.108 5.108 21 C -0.077 4.077 22 H 0.096 0.904 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.198 0.802 26 H 0.088 0.912 27 H 0.191 0.809 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.855 1.901 -3.121 8.664 hybrid contribution 1.365 -1.098 -0.211 1.765 sum -6.490 0.803 -3.332 7.339 Atomic orbital electron populations 1.20137 0.85186 1.03592 1.03242 1.23192 0.95510 0.81592 1.05929 1.69970 1.02317 1.28123 1.20584 1.23073 0.94974 0.91907 1.05538 1.21187 0.85573 0.95058 1.14561 1.16763 0.81416 0.85762 0.85052 1.90613 1.84539 1.18341 1.52699 1.43213 1.06246 1.14257 1.50119 1.19806 0.88470 1.18608 1.15335 0.87205 1.25444 1.01020 0.97433 0.93738 1.69614 1.33025 1.39488 1.09277 0.85721 0.80361 0.79481 0.78062 1.19859 1.20774 1.19189 1.19898 1.00486 0.86299 0.88630 1.29451 0.92535 0.93020 0.94058 1.80940 1.12153 1.07931 1.12841 1.44942 1.05399 1.07792 1.52692 1.22226 1.02305 0.79903 1.03282 0.90431 0.89314 0.91086 0.80157 0.91232 0.80918 0.89730 0.90969 0.87082 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.18 36.01 0.37 -0.37 16 2 C 0.20 3.47 7.88 -155.56 -1.23 2.24 16 3 N -0.49 -9.59 11.20 -10.54 -0.12 -9.71 16 4 C 0.00 -0.05 8.84 -17.44 -0.15 -0.21 16 5 C -0.05 -0.98 5.75 -82.15 -0.47 -1.46 16 6 C 0.52 12.60 7.19 -12.87 -0.09 12.50 16 7 O -0.58 -15.17 14.77 5.17 0.08 -15.09 16 8 N -0.42 -10.02 2.81 -119.44 -0.34 -10.35 16 9 C -0.30 -7.37 9.21 -15.01 -0.14 -7.51 16 10 H 0.11 2.83 7.52 -52.48 -0.39 2.44 16 11 C 0.03 0.62 5.08 -17.45 -0.09 0.53 16 12 N -0.87 -21.06 10.51 55.50 0.58 -20.48 16 13 Si 0.94 18.62 29.58 -169.99 -5.03 13.59 16 14 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 15 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 C 0.17 3.60 4.97 -6.83 -0.03 3.57 16 18 C 0.23 5.09 11.76 -20.78 -0.24 4.84 16 19 N -0.46 -10.93 18.53 42.13 0.78 -10.15 16 20 N -0.43 -8.01 3.17 -117.27 -0.37 -8.38 16 21 C 0.07 0.99 10.75 59.85 0.64 1.64 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.66 7.14 -51.93 -0.37 0.29 16 25 H 0.18 3.23 4.86 -52.49 -0.25 2.97 16 26 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 27 H 0.17 3.74 4.85 -51.93 -0.25 3.49 16 28 H 0.09 1.45 5.38 -51.92 -0.28 1.17 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.11 1.94 6.14 -51.93 -0.32 1.63 16 31 H 0.08 0.90 7.19 -51.93 -0.37 0.52 16 LS Contribution 269.31 15.07 4.06 4.06 Total: -1.00 -31.34 269.31 -4.44 -35.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.65 Total: 4.95 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: -1.44 Total: 15.78 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.54 Total: -59.07 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.34 -4.44 -35.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.416 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds