Wall clock time and date at job start Mon Mar 30 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30865 * 125.41001 * 2 1 4 4 C 1.33308 * 109.69894 * 180.30910 * 3 2 1 5 5 C 1.36780 * 107.77750 * 359.72534 * 4 3 2 6 6 C 1.46634 * 126.85012 * 180.02562 * 5 4 3 7 7 O 1.21726 * 120.00151 * 203.58666 * 6 5 4 8 8 N 1.34780 * 119.99843 * 23.59224 * 6 5 4 9 9 C 1.36888 * 119.99980 * 186.04191 * 8 6 5 10 10 H 1.08006 * 119.99808 * 24.02401 * 9 8 6 11 11 C 1.39009 * 120.00302 * 204.03276 * 9 8 6 12 12 N 1.31398 * 119.99721 * 15.47755 * 11 9 8 13 13 Si 1.86796 * 120.00163 * 195.48352 * 11 9 8 14 14 H 1.48500 * 109.47080 * 89.99412 * 13 11 9 15 15 H 1.48495 * 109.47141 * 209.99703 * 13 11 9 16 16 H 1.48495 * 109.47184 * 329.99506 * 13 11 9 17 17 C 1.46495 * 120.00159 * 6.04354 * 8 6 5 18 18 C 1.47193 * 109.47353 * 53.73081 * 17 8 6 19 19 N 4.08842 * 132.14325 * 82.01028 * 2 1 3 20 20 N 1.34550 * 125.41384 * 179.83882 * 2 1 3 21 21 C 1.46498 * 126.47136 * 359.96555 * 20 2 1 22 22 H 1.09003 * 109.46785 * 270.15941 * 1 2 3 23 23 H 1.08996 * 109.47382 * 30.15745 * 1 2 3 24 24 H 1.09002 * 109.46947 * 150.16224 * 1 2 3 25 25 H 1.07998 * 126.11120 * 179.74728 * 4 3 2 26 26 H 0.97000 * 119.99670 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47583 * 173.73598 * 17 8 6 28 28 H 1.09011 * 109.46785 * 293.72957 * 17 8 6 29 29 H 1.08995 * 109.46984 * 275.11489 * 21 20 2 30 30 H 1.09002 * 109.46562 * 155.12477 * 21 20 2 31 31 H 1.09001 * 109.47394 * 35.12318 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0666 0.0000 4 6 3.5485 0.7056 -0.0068 5 6 3.5979 -0.6613 -0.0050 6 6 4.8022 -1.4978 -0.0101 7 8 4.7488 -2.6391 -0.4300 8 7 5.9683 -1.0030 0.4502 9 6 7.1175 -1.7373 0.3322 10 1 7.1981 -2.4949 -0.4333 11 6 8.1808 -1.5081 1.1979 12 7 7.9923 -0.8225 2.3028 13 14 9.8775 -2.1746 0.7902 14 1 10.6281 -1.1670 -0.0013 15 1 10.6116 -2.4627 2.0484 16 1 9.7416 -3.4241 -0.0007 17 6 6.0059 0.3206 1.0768 18 6 5.0147 0.3775 2.1635 19 7 4.2503 0.4214 3.0020 20 7 2.2867 -1.0966 0.0031 21 6 1.8312 -2.4889 0.0077 22 1 -0.3633 0.0029 1.0277 23 1 -0.3634 0.8885 -0.5162 24 1 -0.3633 -0.8915 -0.5113 25 1 4.3975 1.3732 -0.0123 26 1 8.7343 -0.6623 2.9067 27 1 7.0011 0.5024 1.4828 28 1 5.7729 1.0819 0.3322 29 1 1.6317 -2.8025 1.0323 30 1 2.6042 -3.1254 -0.4230 31 1 0.9191 -2.5748 -0.5828 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262154108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:03 Heat of formation + Delta-G solvation = 59.065597 kcal Electronic energy + Delta-G solvation = -18197.602810 eV Core-core repulsion = 15287.799302 eV Total energy + Delta-G solvation = -2909.803509 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.25189 -40.37759 -37.85356 -36.46733 -35.03063 -33.91662 -32.63473 -29.67548 -28.82480 -27.68419 -26.51277 -23.53100 -21.77132 -20.56022 -19.69681 -18.85669 -17.70492 -17.48945 -16.97254 -16.69128 -15.87428 -15.51870 -15.37850 -14.85017 -14.58016 -14.19427 -14.03046 -13.85178 -13.68804 -13.59669 -13.36819 -13.20759 -13.07780 -12.92816 -12.49830 -12.10525 -12.05151 -11.32145 -11.22676 -10.68095 -10.61887 -9.85205 -9.38338 -8.37652 -6.10128 0.41163 1.40354 1.51362 1.56796 1.67091 1.80105 1.84492 1.98772 2.33401 2.36777 2.98730 3.01070 3.27401 3.47367 3.78555 3.88735 3.99745 4.23051 4.27327 4.56287 4.66489 4.72122 4.72811 5.01399 5.04961 5.18766 5.43472 5.51590 5.98034 6.18277 6.34043 6.69816 6.91069 6.98581 7.18948 7.75583 8.59581 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035792 B = 0.007447 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.115220 B = 3759.091373 C = 4197.611201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.213 3.787 3 N -0.517 5.517 4 C 0.005 3.995 5 C -0.083 4.083 6 C 0.513 3.487 7 O -0.613 6.613 8 N -0.428 5.428 9 C -0.328 4.328 10 H 0.091 0.909 11 C 0.002 3.998 12 N -0.891 5.891 13 Si 1.001 2.999 14 H -0.256 1.256 15 H -0.280 1.280 16 H -0.275 1.275 17 C 0.176 3.824 18 C 0.239 3.761 19 N -0.485 5.485 20 N -0.435 5.435 21 C 0.062 3.938 22 H 0.091 0.909 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.193 0.807 26 H 0.283 0.717 27 H 0.171 0.829 28 H 0.123 0.877 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.361 2.393 -4.562 8.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 N -0.236 5.236 4 C -0.148 4.148 5 C -0.201 4.201 6 C 0.303 3.697 7 O -0.500 6.500 8 N -0.146 5.146 9 C -0.455 4.455 10 H 0.108 0.892 11 C -0.200 4.200 12 N -0.530 5.530 13 Si 0.824 3.176 14 H -0.181 1.181 15 H -0.205 1.205 16 H -0.200 1.200 17 C 0.051 3.949 18 C -0.079 4.079 19 N -0.165 5.165 20 N -0.116 5.116 21 C -0.079 4.079 22 H 0.110 0.890 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.210 0.790 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.140 0.860 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.725 2.564 -3.344 9.689 hybrid contribution 1.533 -1.291 -0.121 2.008 sum -7.192 1.272 -3.465 8.083 Atomic orbital electron populations 1.20443 0.80985 1.05908 1.04806 1.24327 0.97612 0.80579 1.02350 1.70030 1.02155 1.29183 1.22251 1.23290 0.95875 0.91520 1.04105 1.20891 0.85948 0.95273 1.17972 1.17196 0.82334 0.85751 0.84413 1.90569 1.85296 1.19955 1.54214 1.43361 1.06047 1.15133 1.50089 1.19791 0.89815 1.19719 1.16144 0.89161 1.26147 1.03611 0.97108 0.93097 1.69689 1.34152 1.39595 1.09594 0.84799 0.76217 0.78804 0.77776 1.18079 1.20542 1.20039 1.20086 0.99830 0.86009 0.88994 1.29710 0.92195 0.92206 0.93757 1.80925 1.13087 1.08800 1.13706 1.45231 1.04652 1.09306 1.52410 1.22396 1.03165 0.77926 1.04396 0.89022 0.87823 0.87999 0.79044 0.90660 0.81328 0.85977 0.90300 0.89905 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.18 71.24 0.73 -0.51 16 2 C 0.21 6.92 7.88 138.18 1.09 8.01 16 3 N -0.52 -19.32 11.20 -187.27 -2.10 -21.42 16 4 C 0.00 0.19 8.84 84.13 0.74 0.93 16 5 C -0.08 -3.57 5.75 40.00 0.23 -3.34 16 6 C 0.51 25.39 7.19 86.43 0.62 26.01 16 7 O -0.61 -33.49 14.77 -4.43 -0.07 -33.56 16 8 N -0.43 -20.80 2.81 -649.99 -1.83 -22.62 16 9 C -0.33 -16.73 9.21 84.09 0.77 -15.96 16 10 H 0.09 4.86 7.52 -2.91 -0.02 4.84 16 11 C 0.00 0.08 5.08 84.94 0.43 0.51 16 12 N -0.89 -42.63 10.51 21.68 0.23 -42.40 16 13 Si 1.00 37.82 29.58 68.60 2.03 39.85 16 14 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 15 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 16 H -0.28 -10.71 7.11 99.48 0.71 -10.00 16 17 C 0.18 7.30 4.97 84.57 0.42 7.72 16 18 C 0.24 10.63 11.76 89.45 1.05 11.68 16 19 N -0.49 -22.94 18.53 20.00 0.37 -22.57 16 20 N -0.43 -15.79 3.17 -524.93 -1.67 -17.45 16 21 C 0.06 1.82 10.75 127.77 1.37 3.19 16 22 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.10 1.38 7.14 -2.39 -0.02 1.36 16 25 H 0.19 6.66 4.86 -2.91 -0.01 6.65 16 26 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 27 H 0.17 7.26 4.85 -2.39 -0.01 7.25 16 28 H 0.12 4.07 5.38 -2.38 -0.01 4.06 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.94 6.14 -2.39 -0.01 2.92 16 31 H 0.13 2.41 7.19 -2.39 -0.02 2.39 16 Total: -1.00 -68.74 269.31 5.62 -63.13 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.18 Total: 18.80 kcal Atomic # 6 Polarization: 30.79 SS G_CDS: 7.46 Total: 38.25 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -4.99 Total: -126.48 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.07 Total: -33.56 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.85 kcal Total: -68.74 5.62 -63.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262154108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.194 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds