Wall clock time and date at job start Mon Mar 30 2020 18:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00338 * 2 1 4 4 H 1.48496 * 109.47699 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47286 * 299.99859 * 3 2 1 6 6 H 1.48500 * 109.47131 * 59.99796 * 3 2 1 7 7 C 1.38814 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00485 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99708 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64749 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.39983 * 181.10549 * 10 9 7 12 12 C 1.55159 * 102.94134 * 22.11770 * 11 10 9 13 13 H 1.08994 * 111.00854 * 82.57414 * 12 11 10 14 14 C 1.53010 * 111.00026 * 206.42377 * 12 11 10 15 15 N 1.46497 * 109.46984 * 184.99828 * 14 12 11 16 16 C 1.34772 * 120.00394 * 179.97438 * 15 14 12 17 17 O 1.21289 * 119.99334 * 0.02562 * 16 15 14 18 18 C 1.50694 * 120.00460 * 180.02562 * 16 15 14 19 19 F 1.39899 * 109.47463 * 54.99866 * 18 16 15 20 20 F 1.39903 * 109.47268 * 175.00271 * 18 16 15 21 21 C 1.47743 * 125.82120 * 179.97438 * 9 7 2 22 22 H 0.96997 * 119.99987 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.88367 * 61.61048 * 10 9 7 24 24 H 1.09000 * 109.88319 * 300.59666 * 10 9 7 25 25 H 1.09004 * 110.71964 * 140.48013 * 11 10 9 26 26 H 1.08995 * 110.72102 * 263.57296 * 11 10 9 27 27 H 1.08996 * 109.46873 * 304.99862 * 14 12 11 28 28 H 1.08996 * 109.46774 * 65.00127 * 14 12 11 29 29 H 0.97011 * 119.99607 * 0.02562 * 15 14 12 30 30 H 1.09002 * 109.46901 * 294.99843 * 18 16 15 31 31 H 1.09003 * 110.29227 * 37.02208 * 21 9 7 32 32 H 1.08996 * 110.53057 * 274.75420 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4520 -4.0434 0.0283 12 6 0.8472 -4.6576 0.6133 13 1 0.8528 -4.5964 1.7015 14 6 1.0287 -6.1034 0.1466 15 7 2.1966 -6.6879 0.8104 16 6 2.5515 -7.9620 0.5515 17 8 1.9041 -8.6246 -0.2314 18 6 3.7524 -8.5634 1.2348 19 9 3.6119 -8.4378 2.6210 20 9 3.8519 -9.9174 0.8969 21 6 1.9306 -3.7359 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5537 -2.0846 -0.9028 24 1 -0.5585 -2.0496 0.8812 25 1 -1.3022 -4.2479 0.6790 26 1 -0.6395 -4.4175 -0.9781 27 1 0.1399 -6.6812 0.3998 28 1 1.1780 -6.1206 -0.9330 29 1 2.7141 -6.1579 1.4368 30 1 4.6533 -8.0413 0.9121 31 1 2.8301 -3.7465 0.6161 32 1 2.1644 -4.0500 -1.0167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267283918.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:18 Heat of formation + Delta-G solvation = -116.270876 kcal Electronic energy + Delta-G solvation = -18021.989312 eV Core-core repulsion = 14653.893457 eV Total energy + Delta-G solvation = -3368.095855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.39389 -47.42084 -39.79674 -37.72731 -34.93652 -32.64834 -30.21058 -28.93816 -27.63712 -25.42062 -23.55090 -21.25927 -20.09800 -20.02977 -18.47079 -18.03032 -17.67724 -16.85897 -16.01156 -15.56908 -15.01731 -14.66783 -14.40330 -14.21387 -13.75321 -13.68723 -13.38710 -13.16047 -12.43857 -12.37792 -12.10305 -11.85233 -11.50844 -10.95451 -10.85839 -10.55780 -10.25869 -10.09289 -9.98085 -9.88579 -9.72161 -9.29416 -8.65495 -6.89446 -5.76512 -3.10474 1.97793 2.44348 3.36238 3.41636 3.44240 3.58281 3.91626 4.30408 4.43559 4.46903 4.95287 5.10038 5.31172 5.47446 5.57602 5.76939 5.87782 5.94055 6.10896 6.25476 6.40667 6.45042 6.57172 6.80605 7.07444 7.50565 7.57115 7.69895 7.77807 8.20189 9.16482 9.76646 10.42519 11.35239 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.040812 B = 0.004400 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.916416 B = 6361.675333 C = 6792.109521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.082 0.918 14 C 0.130 3.870 15 N -0.705 5.705 16 C 0.469 3.531 17 O -0.508 6.508 18 C 0.257 3.743 19 F -0.189 7.189 20 F -0.178 7.178 21 C 0.141 3.859 22 H 0.252 0.748 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.408 0.592 30 H 0.138 0.862 31 H 0.036 0.964 32 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -13.544 3.093 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.101 0.899 14 C 0.007 3.993 15 N -0.357 5.357 16 C 0.250 3.750 17 O -0.383 6.383 18 C 0.199 3.801 19 F -0.170 7.170 20 F -0.159 7.159 21 C 0.014 3.986 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.244 0.756 30 H 0.155 0.845 31 H 0.054 0.946 32 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.870 -13.799 2.536 14.851 hybrid contribution 0.683 1.091 0.392 1.346 sum 5.553 -12.708 2.928 14.174 Atomic orbital electron populations 1.69971 1.04910 1.24993 1.56982 1.24809 0.95726 0.97719 1.02142 0.86042 0.78683 0.83717 0.77282 1.20513 1.21713 1.21722 1.19097 0.90447 0.82368 1.43945 0.90396 1.44548 1.01707 0.99777 1.87240 1.21159 0.84360 0.88125 1.01245 1.22859 0.95301 0.99406 0.99742 1.22633 0.98919 0.91550 1.00756 0.89942 1.21574 0.86675 0.93535 0.97515 1.46035 1.31517 1.12297 1.45855 1.21009 0.86458 0.83387 0.84159 1.90816 1.52158 1.60569 1.34755 1.21693 1.00403 0.80861 0.77094 1.93059 1.97189 1.95796 1.30972 1.93053 1.97031 1.33932 1.91907 1.21643 0.93936 0.86240 0.96761 0.93752 0.93847 0.93457 0.91868 0.92114 0.91058 0.90671 0.75627 0.84493 0.94561 0.96221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.23 -6.25 10.29 -15.05 -0.15 -6.40 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.61 -14.87 3.41 -169.83 -0.58 -15.45 16 10 C 0.18 4.11 5.37 -3.06 -0.02 4.09 16 11 C -0.13 -2.32 6.42 -24.90 -0.16 -2.48 16 12 C -0.12 -1.82 3.05 -88.48 -0.27 -2.09 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 1.69 5.14 -4.04 -0.02 1.67 16 15 N -0.71 -7.84 5.50 -60.30 -0.33 -8.18 16 16 C 0.47 5.66 7.63 -10.99 -0.08 5.58 16 17 O -0.51 -8.21 16.62 5.55 0.09 -8.12 16 18 C 0.26 2.33 5.72 36.00 0.21 2.54 16 19 F -0.19 -1.85 17.32 2.25 0.04 -1.81 16 20 F -0.18 -2.06 16.95 2.25 0.04 -2.02 16 21 C 0.14 2.64 6.67 -2.37 -0.02 2.62 16 22 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 24 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 29 H 0.41 3.69 8.47 -40.82 -0.35 3.35 16 30 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 LS Contribution 280.85 15.07 4.23 4.23 Total: -1.00 -32.26 280.85 -5.59 -37.85 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.02 Total: -2.33 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.61 Total: 5.22 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.34 Total: -49.65 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.26 -5.59 -37.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267283918.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.423 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds