Wall clock time and date at job start Mon Mar 30 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.36939 * 120.00073 * 179.72302 * 5 4 2 7 7 H 1.08004 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46991 * 59.99625 * 10 8 6 12 12 H 1.48497 * 109.47469 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46948 * 299.99895 * 10 8 6 14 14 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 15 15 C 1.34772 * 119.99614 * 85.00215 * 14 2 1 16 16 O 1.21279 * 120.00140 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99681 * 179.97438 * 15 14 2 18 18 H 1.08995 * 115.55381 * 325.67597 * 17 15 14 19 19 C 1.53007 * 117.49461 * 111.37788 * 17 15 14 20 20 C 1.53002 * 117.50186 * 179.97438 * 17 15 14 21 21 F 1.39897 * 117.49326 * 0.02562 * 20 17 15 22 22 F 1.39893 * 117.50107 * 145.00048 * 20 17 15 23 23 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 24 24 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 26 26 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 27 27 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 28 28 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 29 29 H 0.97000 * 120.00679 * 179.97438 * 9 8 6 30 30 H 0.96996 * 119.99620 * 265.00312 * 14 2 1 31 31 H 1.09004 * 117.49972 * 214.98090 * 19 17 15 32 32 H 1.08996 * 117.50035 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1843 -1.4336 2.2096 7 1 3.6475 -1.8351 3.0564 8 6 5.5677 -1.5328 2.1542 9 7 6.2218 -1.0439 1.1219 10 14 6.5011 -2.3615 3.5440 11 1 6.0455 -3.7686 3.6763 12 1 7.9557 -2.3386 3.2461 13 1 6.2441 -1.6365 4.8142 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0183 -2.3572 16 8 1.8590 1.1585 -2.4115 17 6 2.6498 -0.7287 -3.5875 18 1 3.3942 -1.5049 -3.4110 19 6 1.6578 -0.9476 -4.7317 20 6 2.7732 0.0892 -4.8747 21 9 2.4111 1.4394 -4.8191 22 9 3.8333 -0.2161 -5.7349 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6054 -1.7198 1.2952 27 1 1.7517 -0.1584 2.1370 28 1 3.9825 -0.4623 0.4318 29 1 7.1886 -1.1129 1.0834 30 1 2.2489 -1.6319 -1.1526 31 1 1.7495 -1.8683 -5.3081 32 1 0.6418 -0.5776 -4.5947 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268685155.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:14:23 Heat of formation + Delta-G solvation = -117.982204 kcal Electronic energy + Delta-G solvation = -18189.612978 eV Core-core repulsion = 14821.442914 eV Total energy + Delta-G solvation = -3368.170064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.68946 -48.36761 -41.00000 -37.95836 -36.52746 -35.46103 -33.05050 -31.53174 -27.43171 -25.91942 -24.44187 -23.55865 -22.06747 -21.36777 -19.43342 -19.12475 -18.03886 -17.57341 -17.12649 -16.73552 -16.46590 -16.04383 -15.42592 -15.22698 -15.01238 -14.95367 -14.66139 -14.42817 -13.98269 -13.65540 -13.56218 -13.41707 -13.07578 -12.74612 -12.65582 -12.27460 -12.18673 -11.89835 -11.71072 -11.22332 -10.99445 -10.84952 -10.08918 -9.01823 -7.94576 -5.24496 1.24771 1.48977 1.51490 1.57676 1.85066 2.08151 2.34421 2.56493 3.22105 3.34596 3.40733 3.55613 3.78418 3.96397 4.05080 4.30731 4.47536 4.52463 4.59384 4.78624 4.80989 4.87885 4.94789 5.12091 5.31621 5.50331 5.55016 6.25827 6.51049 7.17694 7.33295 8.06934 8.30141 9.28137 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.005664 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.790950 B = 4942.493710 C = 5766.212480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.056 0.944 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.246 4.246 7 H 0.080 0.920 8 C -0.074 4.074 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.274 1.274 12 H -0.299 1.299 13 H -0.281 1.281 14 N -0.696 5.696 15 C 0.536 3.464 16 O -0.571 6.571 17 C -0.201 4.201 18 H 0.167 0.833 19 C -0.099 4.099 20 C 0.194 3.806 21 F -0.165 7.165 22 F -0.163 7.163 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.373 0.627 29 H 0.250 0.750 30 H 0.413 0.587 31 H 0.173 0.827 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.555 -3.788 -10.396 16.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 H 0.075 0.925 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.377 4.377 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.803 3.197 11 H -0.200 1.200 12 H -0.226 1.226 13 H -0.207 1.207 14 N -0.347 5.347 15 C 0.322 3.678 16 O -0.451 6.451 17 C -0.223 4.223 18 H 0.185 0.815 19 C -0.137 4.137 20 C 0.157 3.843 21 F -0.145 7.145 22 F -0.144 7.144 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.205 0.795 29 H 0.059 0.941 30 H 0.250 0.750 31 H 0.191 0.809 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.742 -3.013 -10.256 16.632 hybrid contribution 1.536 -0.123 0.487 1.616 sum -11.206 -3.136 -9.769 15.194 Atomic orbital electron populations 1.21996 0.92297 1.03375 1.02697 1.21142 0.95616 0.96032 0.83794 0.92528 1.21153 0.83968 0.98203 0.94857 1.42553 1.01901 1.70169 1.24174 1.19612 0.89876 1.28676 0.99558 0.90190 1.25568 0.97573 1.03027 1.00492 1.69822 1.07048 1.52881 1.32211 0.85206 0.76979 0.78681 0.78820 1.19967 1.22583 1.20680 1.45840 1.65659 1.14669 1.08487 1.19678 0.77232 0.86336 0.84505 1.90743 1.51825 1.16998 1.85539 1.23697 1.06440 1.03132 0.89068 0.81534 1.24477 0.95428 0.99476 0.94277 1.20000 0.91705 0.78413 0.94227 1.93057 1.91187 1.33779 1.96506 1.93024 1.58183 1.92354 1.70801 0.92817 0.90441 0.90278 0.93716 0.94481 0.79462 0.94133 0.75040 0.80927 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.48 71.98 0.68 -2.80 16 2 C 0.14 4.43 2.73 44.99 0.12 4.55 16 3 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 4 C 0.14 5.27 5.82 86.38 0.50 5.77 16 5 N -0.74 -36.03 5.43 -343.44 -1.87 -37.90 16 6 C -0.25 -13.16 9.99 84.03 0.84 -12.33 16 7 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 9 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 10 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 N -0.70 -20.72 4.52 -442.53 -2.00 -22.72 16 15 C 0.54 16.91 7.58 87.66 0.66 17.58 16 16 O -0.57 -22.57 14.81 -3.03 -0.04 -22.61 16 17 C -0.20 -4.74 6.18 -11.54 -0.07 -4.81 16 18 H 0.17 3.34 8.14 -2.39 -0.02 3.32 16 19 C -0.10 -1.51 10.20 30.58 0.31 -1.20 16 20 C 0.19 4.98 5.19 30.58 0.16 5.14 16 21 F -0.16 -5.48 15.71 44.97 0.71 -4.77 16 22 F -0.16 -4.30 17.60 44.97 0.79 -3.51 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.37 19.75 7.33 -92.70 -0.68 19.07 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.41 11.08 8.60 -92.71 -0.80 10.29 16 31 H 0.17 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.06 289.46 3.25 -67.80 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.32 Total: 26.68 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 3.68 Total: 8.21 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -3.58 Total: -118.92 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.04 Total: -22.61 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 1.50 Total: -8.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -71.06 3.25 -67.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268685155.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.177 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds