Wall clock time and date at job start Mon Mar 30 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47097 * 2 1 4 4 H 1.09001 * 109.47090 * 304.99867 * 3 2 1 5 5 C 1.53000 * 109.47256 * 65.00013 * 3 2 1 6 6 C 1.50702 * 109.47351 * 184.99777 * 3 2 1 7 7 C 1.38381 * 119.84848 * 120.00116 * 6 3 2 8 8 C 1.37930 * 120.15608 * 180.02562 * 7 6 3 9 9 C 1.39662 * 119.84352 * 359.97438 * 8 7 6 10 10 C 1.47662 * 120.15376 * 179.97438 * 9 8 7 11 11 O 1.21513 * 119.99856 * 0.02562 * 10 9 8 12 12 O 1.34727 * 120.00413 * 179.72538 * 10 9 8 13 13 C 1.34850 * 117.00593 * 180.27430 * 12 10 9 14 14 H 1.08003 * 119.99581 * 0.02562 * 13 12 10 15 15 C 1.38808 * 120.00582 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00442 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99924 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47388 * 89.99333 * 17 15 13 19 19 H 1.48499 * 109.47095 * 210.00041 * 17 15 13 20 20 H 1.48501 * 109.47101 * 329.99589 * 17 15 13 21 21 C 1.39665 * 119.69707 * 0.26214 * 9 8 7 22 22 C 1.37934 * 119.84119 * 359.46354 * 21 9 8 23 23 H 1.09004 * 109.47010 * 60.00321 * 1 2 3 24 24 H 1.08996 * 109.46797 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47155 * 299.99771 * 1 2 3 26 26 H 1.09000 * 109.47454 * 239.99742 * 2 1 3 27 27 H 1.09003 * 109.46990 * 120.00236 * 2 1 3 28 28 H 1.09001 * 109.47191 * 59.99915 * 5 3 2 29 29 H 1.08996 * 109.47612 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.46708 * 299.99929 * 5 3 2 31 31 H 1.08003 * 119.91358 * 0.02562 * 7 6 3 32 32 H 1.07997 * 120.07741 * 180.02562 * 8 7 6 33 33 H 0.97002 * 120.00210 * 179.97438 * 16 15 13 34 34 H 1.07997 * 120.08399 * 179.72519 * 21 9 8 35 35 H 1.08008 * 119.92218 * 180.27629 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 6 4.1436 2.0753 -1.1984 8 6 5.5177 2.0804 -1.3182 9 6 6.3020 1.4473 -0.3515 10 6 7.7736 1.4481 -0.4733 11 8 8.3049 2.0009 -1.4161 12 8 8.5276 0.8412 0.4639 13 6 9.8649 0.8836 0.2958 14 1 10.2856 1.3888 -0.5611 15 6 10.7007 0.2789 1.2244 16 7 12.0039 0.3198 1.0603 17 14 9.9731 -0.5943 2.7068 18 1 9.7268 -2.0195 2.3703 19 1 10.9227 -0.5115 3.8455 20 1 8.6912 0.0540 3.0833 21 6 5.6879 0.8082 0.7278 22 6 4.3130 0.8157 0.8381 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.0698 1.5875 2.1492 29 1 1.9981 3.1543 1.3072 30 1 0.5489 2.1252 1.3968 31 1 3.5357 2.5648 -1.9449 32 1 5.9860 2.5735 -2.1572 33 1 12.5880 -0.1025 1.7095 34 1 6.2881 0.3129 1.4766 35 1 3.8369 0.3257 1.6747 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756521087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:20 Heat of formation + Delta-G solvation = -75.275238 kcal Electronic energy + Delta-G solvation = -17340.054550 eV Core-core repulsion = 14495.673178 eV Total energy + Delta-G solvation = -2844.381372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80577 -38.71543 -36.16118 -35.19027 -32.37896 -31.26412 -30.76188 -28.96899 -26.01211 -24.81988 -22.92012 -22.36999 -20.50967 -19.55584 -18.03692 -17.26190 -16.10823 -15.35896 -15.15534 -14.72087 -14.46182 -14.30469 -13.97696 -13.78964 -13.30415 -13.00343 -12.77947 -12.44548 -12.24154 -12.14007 -11.93056 -11.81233 -11.29626 -11.13785 -10.89981 -10.75466 -10.55989 -10.50394 -10.39284 -9.73482 -9.22763 -8.76997 -8.72491 -8.49865 -6.42221 -4.13505 1.13054 1.60237 3.14667 3.21545 3.32779 3.38713 4.11954 4.21713 4.22911 4.53279 4.64199 4.86869 5.08527 5.10909 5.15866 5.21689 5.27298 5.33938 5.43616 5.60477 5.64894 5.72441 5.78426 5.84224 5.88293 5.93578 6.13514 6.15090 6.19202 6.28654 6.62261 6.70475 6.82367 7.11418 7.70159 7.99860 8.60317 8.95895 9.65678 10.65837 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.033092 B = 0.005039 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.922638 B = 5555.524751 C = 6152.263897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.052 4.052 4 H 0.077 0.923 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.129 4.129 8 C -0.066 4.066 9 C -0.092 4.092 10 C 0.444 3.556 11 O -0.538 6.538 12 O -0.243 6.243 13 C -0.375 4.375 14 H 0.111 0.889 15 C 0.066 3.934 16 N -0.869 5.869 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.259 1.259 21 C -0.075 4.075 22 C -0.127 4.127 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.281 0.719 34 H 0.135 0.865 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.058 -0.093 1.239 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.070 4.070 4 H 0.095 0.905 5 C -0.203 4.203 6 C -0.067 4.067 7 C -0.147 4.147 8 C -0.084 4.084 9 C -0.093 4.093 10 C 0.292 3.708 11 O -0.434 6.434 12 O -0.152 6.152 13 C -0.450 4.450 14 H 0.128 0.872 15 C -0.139 4.139 16 N -0.508 5.508 17 Si 0.729 3.271 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.183 1.183 21 C -0.093 4.093 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.686 -0.020 1.101 21.713 hybrid contribution 0.073 -0.394 0.607 0.727 sum -21.613 -0.415 1.708 21.684 Atomic orbital electron populations 1.21831 0.95843 1.01558 1.01828 1.21600 0.95590 0.95745 1.02567 1.20193 0.90993 0.96774 0.99087 0.90471 1.21902 1.01034 1.00693 0.96667 1.19984 0.95101 0.97000 0.94636 1.20912 0.94122 1.01298 0.98382 1.21223 0.93032 0.96411 0.97776 1.19385 0.90899 1.01873 0.97174 1.20558 0.87261 0.80576 0.82387 1.90664 1.74103 1.45269 1.33408 1.83527 1.20937 1.64645 1.46045 1.20722 0.75972 1.36355 1.11957 0.87151 1.24570 0.94377 0.96517 0.98417 1.69590 1.02222 1.42332 1.36624 0.86226 0.79690 0.80144 0.80993 1.19700 1.20611 1.18277 1.21525 0.94630 0.96354 0.96823 1.20888 0.93239 1.01033 0.99339 0.92811 0.92824 0.92477 0.91730 0.91651 0.92336 0.92497 0.92281 0.85810 0.84804 0.90878 0.84751 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -1.01 5.14 -26.73 -0.14 -1.15 16 3 C -0.05 -0.49 2.56 -91.77 -0.23 -0.72 16 4 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 5 C -0.15 -1.24 8.76 37.16 0.33 -0.91 16 6 C -0.07 -0.83 4.79 -104.52 -0.50 -1.33 16 7 C -0.13 -1.72 9.65 -39.64 -0.38 -2.10 16 8 C -0.07 -1.11 9.60 -39.16 -0.38 -1.48 16 9 C -0.09 -1.81 5.87 -104.99 -0.62 -2.43 16 10 C 0.44 11.17 7.84 34.58 0.27 11.44 16 11 O -0.54 -14.96 15.59 -19.28 -0.30 -15.26 16 12 O -0.24 -6.60 7.82 -21.61 -0.17 -6.77 16 13 C -0.37 -11.31 10.11 30.94 0.31 -10.99 16 14 H 0.11 3.66 7.09 -52.48 -0.37 3.29 16 15 C 0.07 1.88 5.50 -17.52 -0.10 1.79 16 16 N -0.87 -25.75 13.96 55.49 0.77 -24.98 16 17 Si 0.90 21.33 28.62 -169.99 -4.86 16.46 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.07 -1.28 9.62 -39.16 -0.38 -1.66 16 22 C -0.13 -1.73 8.74 -39.64 -0.35 -2.07 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 28 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 31 H 0.12 1.31 7.94 -52.48 -0.42 0.89 16 32 H 0.13 2.24 7.65 -52.49 -0.40 1.84 16 33 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.13 2.34 7.61 -52.49 -0.40 1.94 16 35 H 0.12 1.37 7.14 -52.48 -0.37 1.00 16 LS Contribution 299.37 15.07 4.51 4.51 Total: -1.00 -32.22 299.37 -6.50 -38.72 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.66 Total: -0.34 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.80 Total: -12.35 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.77 Total: -24.98 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.47 Total: -22.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.86 Total: 16.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.22 -6.50 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756521087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.551 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds