Wall clock time and date at job start Mon Mar 30 2020 18:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47371 * 2 1 4 4 O 1.45197 * 109.47577 * 120.00714 * 2 1 3 5 5 C 1.34224 * 117.00446 * 89.99200 * 4 2 1 6 6 O 1.20830 * 119.99648 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00250 * 180.02562 * 5 4 2 8 8 C 1.50708 * 109.47368 * 180.02562 * 7 5 4 9 9 C 1.37631 * 120.12797 * 265.00428 * 8 7 5 10 10 C 1.38617 * 120.24935 * 179.97438 * 9 8 7 11 11 C 1.38659 * 120.49753 * 0.02562 * 10 9 8 12 12 C 1.37591 * 120.24814 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.12406 * 84.72361 * 8 7 5 14 14 C 1.41394 * 120.24704 * 0.02562 * 13 8 7 15 15 H 1.07999 * 119.99576 * 333.89506 * 14 13 8 16 16 C 1.39936 * 120.00084 * 153.89383 * 14 13 8 17 17 N 1.30823 * 120.00218 * 343.71483 * 16 14 13 18 18 Si 1.86806 * 120.00088 * 163.71714 * 16 14 13 19 19 H 1.48497 * 109.46918 * 60.00210 * 18 16 14 20 20 H 1.48502 * 109.47252 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46900 * 300.00273 * 18 16 14 22 22 H 1.09000 * 109.46938 * 299.99551 * 1 2 3 23 23 H 1.08999 * 109.47118 * 59.99307 * 1 2 3 24 24 H 1.09000 * 109.47368 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46938 * 240.00449 * 2 1 3 26 26 H 1.09001 * 109.47050 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47189 * 300.00790 * 3 2 1 28 28 H 1.09000 * 109.46723 * 60.00317 * 3 2 1 29 29 H 1.09000 * 109.47361 * 300.00222 * 7 5 4 30 30 H 1.08997 * 109.47049 * 60.00152 * 7 5 4 31 31 H 1.08005 * 119.87632 * 359.97438 * 9 8 7 32 32 H 1.07993 * 119.74862 * 180.02562 * 10 9 8 33 33 H 1.07998 * 119.87354 * 180.02562 * 11 10 9 34 34 H 1.08008 * 120.12341 * 179.97438 * 12 11 10 35 35 H 0.97001 * 120.00340 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2171 -2.0076 1.0849 6 8 1.9980 -2.5748 0.0408 7 6 2.7183 -2.7855 2.2743 8 6 2.8613 -4.2384 1.9004 9 6 1.8418 -5.1238 2.1665 10 6 1.9705 -6.4606 1.8231 11 6 3.1252 -6.9215 1.2093 12 6 4.1576 -6.0544 0.9347 13 6 4.0353 -4.6937 1.2725 14 6 5.0871 -3.7922 0.9893 15 1 4.8754 -2.7425 0.8488 16 6 6.4023 -4.2600 0.8910 17 7 6.7141 -5.4394 1.3636 18 14 7.7128 -3.2005 0.0851 19 1 7.8417 -1.9216 0.8287 20 1 9.0126 -3.9185 0.1074 21 1 7.3262 -2.9190 -1.3207 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.6872 -2.3931 2.5831 30 1 2.0089 -2.6896 3.0963 31 1 0.9381 -4.7758 2.6447 32 1 1.1653 -7.1483 2.0353 33 1 3.2146 -7.9650 0.9457 34 1 5.0563 -6.4156 0.4568 35 1 7.6256 -5.7639 1.2952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777159357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:22 Heat of formation + Delta-G solvation = -100.748940 kcal Electronic energy + Delta-G solvation = -17980.513896 eV Core-core repulsion = 15135.027902 eV Total energy + Delta-G solvation = -2845.485995 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49599 -39.47646 -37.64353 -35.53954 -34.21645 -33.35125 -31.38803 -28.83575 -28.18156 -26.98181 -23.68261 -22.84913 -21.79241 -21.04056 -19.10823 -18.67255 -17.48460 -17.07797 -16.93250 -16.25573 -15.59084 -15.46848 -15.15641 -14.56031 -14.40141 -14.08988 -13.61303 -13.43086 -13.16376 -13.13521 -12.95308 -12.86601 -12.76653 -12.61577 -12.52557 -12.13753 -11.87267 -11.52324 -11.36665 -11.28534 -11.24329 -11.05407 -9.26551 -9.23663 -8.63056 -6.34530 0.91727 1.08464 1.34655 1.39272 1.44983 1.52718 1.95354 2.18234 2.75450 3.70891 3.85783 3.98260 4.02562 4.18304 4.30868 4.34940 4.55893 4.67615 4.68964 4.76159 4.78863 4.84779 4.90902 5.04645 5.13616 5.15888 5.23788 5.33575 5.50356 5.59579 5.73947 6.00007 6.11900 6.18562 6.37647 6.68902 6.94118 6.97642 7.06133 8.33211 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.008633 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.578299 B = 3242.716221 C = 4589.317989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.062 3.938 3 C -0.141 4.141 4 O -0.360 6.360 5 C 0.465 3.535 6 O -0.533 6.533 7 C -0.043 4.043 8 C -0.201 4.201 9 C -0.086 4.086 10 C -0.241 4.241 11 C -0.113 4.113 12 C -0.191 4.191 13 C 0.097 3.903 14 C -0.487 4.487 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.970 3.030 19 H -0.254 1.254 20 H -0.264 1.264 21 H -0.269 1.269 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 10.486 0.048 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 C -0.198 4.198 4 O -0.278 6.278 5 C 0.309 3.691 6 O -0.422 6.422 7 C -0.080 4.080 8 C -0.202 4.202 9 C -0.104 4.104 10 C -0.260 4.260 11 C -0.131 4.131 12 C -0.211 4.211 13 C 0.094 3.906 14 C -0.516 4.516 15 H 0.087 0.913 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.791 3.209 19 H -0.178 1.178 20 H -0.188 1.188 21 H -0.194 1.194 22 H 0.098 0.902 23 H 0.115 0.885 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.110 10.190 -0.236 11.883 hybrid contribution 0.756 -0.164 -0.636 1.001 sum -5.353 10.026 -0.872 11.399 Atomic orbital electron populations 1.22162 0.92998 1.02093 1.04579 1.23009 0.95860 0.94195 0.86165 1.21883 1.01713 0.91547 1.04617 1.86567 1.77405 1.22040 1.41823 1.24335 0.73203 0.80923 0.90592 1.90607 1.48781 1.70733 1.32034 1.20006 1.03548 0.90919 0.93543 1.19477 0.97779 0.93804 1.09166 1.20768 0.96958 0.93613 0.99089 1.20739 0.99042 0.95977 1.10241 1.20987 0.94303 0.98403 0.99406 1.21310 0.98863 0.94823 1.06090 1.17744 0.92008 0.92810 0.87996 1.19604 0.91967 0.95485 1.44583 0.91325 1.26656 1.01649 0.96466 0.92943 1.69859 1.21751 1.19300 1.33931 0.85436 0.76783 0.79342 0.79359 1.17819 1.18823 1.19390 0.90221 0.88533 0.94287 0.92335 0.92477 0.88109 0.90263 0.87695 0.85854 0.86241 0.86370 0.87388 0.88324 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.55 71.98 0.69 -3.03 16 2 C 0.06 1.76 3.18 30.59 0.10 1.85 16 3 C -0.14 -2.82 9.57 71.98 0.69 -2.13 16 4 O -0.36 -12.40 9.88 -51.35 -0.51 -12.91 16 5 C 0.47 19.14 7.54 71.23 0.54 19.68 16 6 O -0.53 -25.81 15.25 21.95 0.33 -25.48 16 7 C -0.04 -1.73 5.29 29.10 0.15 -1.58 16 8 C -0.20 -9.72 4.43 -19.40 -0.09 -9.80 16 9 C -0.09 -3.85 9.66 22.22 0.21 -3.64 16 10 C -0.24 -10.80 10.05 22.46 0.23 -10.57 16 11 C -0.11 -5.48 10.02 22.22 0.22 -5.26 16 12 C -0.19 -10.53 8.68 22.73 0.20 -10.33 16 13 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 14 C -0.49 -26.53 8.14 23.46 0.19 -26.34 16 15 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 16 C 0.04 1.95 5.16 85.25 0.44 2.39 16 17 N -0.82 -43.56 10.95 21.82 0.24 -43.32 16 18 Si 0.97 39.17 29.59 68.60 2.03 41.20 16 19 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.93 7.16 -2.39 -0.02 1.92 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.11 4.25 7.08 -2.39 -0.02 4.23 16 30 H 0.12 3.97 8.05 -2.39 -0.02 3.95 16 31 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.67 6.20 -2.91 -0.02 5.65 16 35 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 Total: -1.00 -65.06 300.33 6.62 -58.43 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 1.07 Total: 25.62 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.45 Total: -43.55 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.24 Total: -43.32 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.17 Total: -38.38 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -65.06 6.62 -58.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777159357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.316 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds