Wall clock time and date at job start Mon Mar 30 2020 18:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47149 * 269.99722 * 3 2 1 5 5 H 1.48500 * 109.47469 * 29.99988 * 3 2 1 6 6 H 1.48501 * 109.47215 * 150.00390 * 3 2 1 7 7 C 1.38814 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99730 * 200.53295 * 7 2 1 9 9 N 1.36933 * 119.99899 * 20.53820 * 7 2 1 10 10 C 1.46502 * 120.00431 * 38.14603 * 9 7 2 11 11 C 1.52996 * 109.47152 * 89.99476 * 10 9 7 12 12 H 1.08995 * 109.47363 * 305.00236 * 11 10 9 13 13 O 1.42903 * 109.46860 * 65.00592 * 11 10 9 14 14 C 1.50701 * 109.47059 * 185.00170 * 11 10 9 15 15 C 1.38226 * 119.61847 * 124.73195 * 14 11 10 16 16 C 1.38626 * 119.16256 * 179.75836 * 15 14 11 17 17 C 1.38677 * 118.41974 * 0.50289 * 16 15 14 18 18 C 1.38184 * 119.16043 * 359.73865 * 17 16 15 19 19 N 1.31854 * 119.61952 * 305.00410 * 14 11 10 20 20 C 1.46502 * 119.99884 * 218.14308 * 9 7 2 21 21 C 1.52995 * 117.49752 * 13.73319 * 20 9 7 22 22 C 1.53002 * 60.00250 * 252.51040 * 21 20 9 23 23 H 0.96994 * 120.00228 * 354.98036 * 1 2 3 24 24 H 1.09008 * 109.46730 * 329.99755 * 10 9 7 25 25 H 1.08997 * 109.47272 * 210.00114 * 10 9 7 26 26 H 0.96701 * 114.00270 * 60.00154 * 13 11 10 27 27 H 1.08000 * 120.42068 * 359.97438 * 15 14 11 28 28 H 1.07997 * 120.79643 * 180.21802 * 16 15 14 29 29 H 1.07998 * 120.42122 * 179.71127 * 17 16 15 30 30 H 1.08001 * 119.61601 * 179.97438 * 18 17 16 31 31 H 1.09001 * 115.55190 * 159.44108 * 20 9 7 32 32 H 1.09006 * 117.49981 * 0.02562 * 21 20 9 33 33 H 1.09003 * 117.50247 * 145.02245 * 21 20 9 34 34 H 1.08994 * 117.49977 * 252.51218 * 22 21 20 35 35 H 1.09000 * 117.51740 * 107.47618 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0387 -1.2317 0.3286 9 7 1.3908 -2.3505 -0.4150 10 6 0.4609 -2.3131 -1.5464 11 6 1.2290 -2.5610 -2.8462 12 1 2.0439 -1.8421 -2.9295 13 8 1.7622 -3.8868 -2.8389 14 6 0.2963 -2.4012 -4.0191 15 6 0.6143 -1.5121 -5.0286 16 6 -0.2479 -1.3763 -6.1055 17 6 -1.4083 -2.1355 -6.1218 18 6 -1.6620 -3.0001 -5.0742 19 7 -0.8163 -3.1071 -4.0679 20 6 1.6581 -3.6167 0.2719 21 6 2.3706 -3.5500 1.6242 22 6 3.1172 -4.0617 0.3906 23 1 -0.4850 0.8368 0.0735 24 1 -0.0199 -1.3358 -1.5893 25 1 -0.2973 -3.0858 -1.4193 26 1 1.0918 -4.5800 -2.7670 27 1 1.5247 -0.9331 -4.9806 28 1 -0.0237 -0.6921 -6.9105 29 1 -2.1051 -2.0518 -6.9427 30 1 -2.5637 -3.5946 -5.0791 31 1 0.9046 -4.3927 0.1373 32 1 2.6401 -2.5641 2.0030 33 1 2.0858 -4.2823 2.3798 34 1 3.3235 -5.1305 0.3345 35 1 3.8781 -3.4126 -0.0427 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851744607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:44 Heat of formation + Delta-G solvation = 15.265728 kcal Electronic energy + Delta-G solvation = -18222.594704 eV Core-core repulsion = 15414.432234 eV Total energy + Delta-G solvation = -2808.162470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19605 -38.99930 -37.47005 -35.18202 -33.35178 -32.93384 -32.17321 -28.92971 -26.52033 -24.63587 -24.13960 -22.89175 -22.24645 -21.65340 -18.80067 -17.90958 -17.50717 -17.16704 -16.76371 -16.18695 -16.15398 -15.74525 -15.30207 -14.89363 -14.73269 -14.17341 -13.90885 -13.57133 -13.04993 -12.98939 -12.72128 -12.70620 -12.32719 -12.13859 -12.04883 -11.87567 -11.35586 -11.17629 -10.87392 -10.77369 -10.45556 -10.24327 -9.93682 -8.39793 -7.83569 -5.47016 0.18604 0.40873 1.42018 1.44399 1.53202 2.45133 2.85909 3.14042 3.28698 3.49366 3.56185 3.76778 3.94291 4.05797 4.21586 4.29084 4.33970 4.47654 4.54709 4.57905 4.70046 4.76289 4.86772 4.98978 5.06065 5.17893 5.27996 5.36271 5.40394 5.57954 5.58499 5.71018 5.83880 6.44944 6.85505 7.09339 7.13859 7.83522 8.36628 9.10146 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.008472 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.753032 B = 3304.332811 C = 4269.571607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.031 4.031 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.052 0.948 9 N -0.560 5.560 10 C 0.146 3.854 11 C 0.151 3.849 12 H 0.084 0.916 13 O -0.553 6.553 14 C 0.086 3.914 15 C -0.180 4.180 16 C -0.076 4.076 17 C -0.171 4.171 18 C 0.084 3.916 19 N -0.501 5.501 20 C 0.112 3.888 21 C -0.199 4.199 22 C -0.196 4.196 23 H 0.253 0.747 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.376 0.624 27 H 0.134 0.866 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.150 -4.796 -11.413 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.229 4.229 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.070 0.930 9 N -0.277 5.277 10 C 0.019 3.981 11 C 0.089 3.911 12 H 0.102 0.898 13 O -0.358 6.358 14 C -0.051 4.051 15 C -0.200 4.200 16 C -0.101 4.101 17 C -0.190 4.190 18 C -0.073 4.073 19 N -0.212 5.212 20 C 0.004 3.996 21 C -0.238 4.238 22 C -0.236 4.236 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.053 0.947 26 H 0.223 0.777 27 H 0.152 0.848 28 H 0.183 0.817 29 H 0.189 0.811 30 H 0.198 0.802 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.896 -4.886 -10.818 12.021 hybrid contribution 0.095 1.417 -0.268 1.445 sum -1.800 -3.468 -11.086 11.755 Atomic orbital electron populations 1.70038 1.06781 1.26370 1.52886 1.25876 0.95747 1.01400 0.99866 0.85465 0.78419 0.79885 0.77924 1.20673 1.21751 1.19611 1.19062 0.93855 0.85981 1.40384 0.93042 1.43412 1.50476 1.02927 1.30855 1.21254 0.90639 1.01361 0.84874 1.21328 0.93795 0.84604 0.91388 0.89800 1.86512 1.37709 1.15123 1.96458 1.22080 0.93327 0.93627 0.96107 1.22202 1.02198 1.00077 0.95542 1.21973 0.93165 0.97668 0.97343 1.22527 0.98544 0.97011 1.00918 1.23349 0.98158 0.96727 0.89089 1.67383 1.03108 1.24136 1.26536 1.21258 0.93057 0.89912 0.95387 1.23105 1.07066 1.01515 0.92087 1.23166 0.97981 1.00073 1.02379 0.93720 0.91503 0.94670 0.77705 0.84773 0.81709 0.81059 0.80170 0.88343 0.91115 0.88077 0.88018 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 11.45 21.65 0.25 -53.36 16 2 C -0.03 -1.74 4.97 84.86 0.42 -1.32 16 3 Si 0.96 44.57 29.60 68.60 2.03 46.60 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.26 -14.49 8.04 84.03 0.68 -13.82 16 8 H 0.05 2.90 7.24 -2.91 -0.02 2.88 16 9 N -0.56 -28.51 2.74 -678.03 -1.86 -30.37 16 10 C 0.15 7.03 4.80 86.38 0.41 7.44 16 11 C 0.15 6.33 3.54 29.85 0.11 6.43 16 12 H 0.08 3.83 7.87 -2.39 -0.02 3.81 16 13 O -0.55 -21.88 12.88 -148.98 -1.92 -23.80 16 14 C 0.09 3.16 5.78 42.55 0.25 3.40 16 15 C -0.18 -5.63 9.71 22.36 0.22 -5.41 16 16 C -0.08 -1.77 10.18 22.47 0.23 -1.54 16 17 C -0.17 -3.57 10.11 22.36 0.23 -3.34 16 18 C 0.08 2.16 11.18 84.67 0.95 3.11 16 19 N -0.50 -17.12 9.96 -183.89 -1.83 -18.95 16 20 C 0.11 4.96 6.21 44.99 0.28 5.24 16 21 C -0.20 -8.17 9.81 30.59 0.30 -7.87 16 22 C -0.20 -7.72 10.09 30.60 0.31 -7.41 16 23 H 0.25 14.32 8.32 -92.71 -0.77 13.55 16 24 H 0.07 3.72 5.52 -2.38 -0.01 3.71 16 25 H 0.03 1.68 7.98 -2.39 -0.02 1.66 16 26 H 0.38 12.99 9.02 -74.06 -0.67 12.33 16 27 H 0.13 3.97 7.95 -2.91 -0.02 3.95 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.10 4.01 8.10 -2.39 -0.02 3.99 16 32 H 0.07 3.28 6.95 -2.38 -0.02 3.27 16 33 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 34 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.06 2.76 8.02 -2.39 -0.02 2.75 16 Total: -1.00 -66.11 299.80 1.46 -64.65 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.42 Total: 30.30 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.37 Total: -15.08 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.44 Total: -102.68 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.92 Total: -23.80 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.11 1.46 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.918 kcal (2) G-P(sol) polarization free energy of solvation -66.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds