Wall clock time and date at job start Mon Mar 30 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99569 * 2 1 4 4 H 1.48502 * 109.46964 * 239.99997 * 3 2 1 5 5 H 1.48494 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46682 * 120.00277 * 3 2 1 7 7 C 1.37875 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99987 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99977 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47188 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47413 * 63.29318 * 12 11 10 14 14 C 1.48125 * 110.99756 * 66.07248 * 13 12 11 15 15 C 1.50870 * 105.66111 * 92.02240 * 14 13 12 16 16 C 1.38304 * 132.92868 * 197.38301 * 15 14 13 17 17 C 1.38320 * 118.93465 * 179.97438 * 16 15 14 18 18 N 1.31889 * 120.77332 * 0.26225 * 17 16 15 19 19 C 1.31964 * 121.85249 * 359.49670 * 18 17 16 20 20 C 1.38019 * 120.57084 * 0.47681 * 19 18 17 21 21 C 1.48104 * 111.00597 * 181.16358 * 13 12 11 22 22 H 0.96997 * 120.00496 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47266 * 60.00033 * 9 7 2 24 24 H 1.08999 * 109.47202 * 299.99597 * 9 7 2 25 25 H 1.09001 * 109.47360 * 60.00046 * 11 10 9 26 26 H 1.08997 * 109.47338 * 299.99836 * 11 10 9 27 27 H 1.09000 * 109.47359 * 303.29100 * 12 11 10 28 28 H 1.09003 * 109.47532 * 183.29331 * 12 11 10 29 29 H 1.09001 * 110.21339 * 332.97360 * 14 13 12 30 30 H 1.09005 * 110.20937 * 211.07108 * 14 13 12 31 31 H 1.08007 * 120.53109 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.61586 * 179.97438 * 17 16 15 33 33 H 1.07996 * 119.71248 * 180.27809 * 19 18 17 34 34 H 1.08996 * 110.19627 * 27.06536 * 21 13 12 35 35 H 1.08993 * 110.20089 * 148.94383 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5852 -0.0005 11 6 1.5652 -4.8753 0.0000 12 6 2.6482 -5.9561 -0.0006 13 7 3.4355 -5.8613 1.2359 14 6 2.6079 -6.1933 2.4187 15 6 2.7943 -7.6734 2.6437 16 6 2.0808 -8.6139 3.3644 17 6 2.5204 -9.9253 3.3725 18 7 3.6048 -10.2776 2.7096 19 6 4.3062 -9.4070 2.0086 20 6 3.9268 -8.0810 1.9545 21 6 4.5136 -6.8765 1.2581 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 0.9448 -4.9827 -0.8897 26 1 0.9454 -4.9822 0.8903 27 1 3.3033 -5.8136 -0.8602 28 1 2.1807 -6.9390 -0.0592 29 1 1.5595 -5.9718 2.2190 30 1 2.9525 -5.6338 3.2885 31 1 1.1945 -8.3288 3.9120 32 1 1.9718 -10.6687 3.9319 33 1 5.1864 -9.7342 1.4752 34 1 4.8074 -7.1357 0.2409 35 1 5.3724 -6.5015 1.8146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857882631.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:47 Heat of formation + Delta-G solvation = 5.296918 kcal Electronic energy + Delta-G solvation = -17337.625566 eV Core-core repulsion = 14529.030816 eV Total energy + Delta-G solvation = -2808.594750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.11580 -38.16514 -36.39322 -32.89163 -32.32391 -31.80356 -28.94996 -28.10731 -26.84525 -24.32795 -22.53265 -22.27204 -22.00457 -20.59911 -17.04435 -16.57469 -16.27855 -16.17263 -15.53187 -15.33524 -14.80355 -14.49256 -14.11411 -13.78356 -13.72729 -13.14893 -12.93757 -12.62470 -12.20766 -12.01494 -11.72054 -11.57126 -11.16462 -10.83289 -10.73800 -10.46670 -10.00713 -9.77173 -9.60876 -9.12917 -9.09472 -8.78991 -8.58552 -8.13666 -6.08737 -4.09942 0.89831 1.04062 3.34169 3.36496 3.40762 3.57575 3.87847 4.09853 4.23159 4.36815 4.48594 4.79900 4.81829 5.03018 5.09890 5.14107 5.27744 5.36854 5.46218 5.57156 5.63337 5.66573 5.74902 5.80482 5.90628 6.05211 6.10978 6.21327 6.47563 6.74861 6.98956 7.11636 7.44344 7.75264 7.82610 8.18230 8.61727 9.04076 9.54856 11.02903 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.049558 B = 0.003905 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.858422 B = 7169.188560 C = 7306.846006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.066 3.934 12 C 0.046 3.954 13 N -0.480 5.480 14 C 0.069 3.931 15 C -0.078 4.078 16 C -0.153 4.153 17 C 0.095 3.905 18 N -0.486 5.486 19 C 0.115 3.885 20 C -0.177 4.177 21 C 0.080 3.920 22 H 0.264 0.736 23 H 0.003 0.997 24 H 0.003 0.997 25 H 0.042 0.958 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -17.733 4.813 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.012 4.012 12 C -0.082 4.082 13 N -0.200 5.200 14 C -0.059 4.059 15 C -0.087 4.087 16 C -0.174 4.174 17 C -0.062 4.062 18 N -0.195 5.195 19 C -0.041 4.041 20 C -0.181 4.181 21 C -0.049 4.049 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.153 0.847 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.103 0.897 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.323 -17.849 4.815 19.238 hybrid contribution -0.711 0.828 -0.011 1.092 sum 4.611 -17.021 4.804 18.277 Atomic orbital electron populations 1.69952 1.06116 1.27209 1.50745 1.24946 0.94959 0.99412 0.95208 0.86396 0.79301 0.81915 0.78867 1.20019 1.21228 1.19993 1.21025 0.94090 0.89319 1.50572 0.91510 1.20186 0.88842 0.83872 0.95133 1.87956 1.34646 1.12238 1.95013 1.22269 0.93654 0.86307 0.99000 1.22423 0.96480 0.96364 0.92890 1.65245 1.09396 1.43347 1.02025 1.21947 1.00002 0.88239 0.95683 1.21715 0.94624 0.97768 0.94631 1.21575 1.01397 0.93516 1.00886 1.22755 0.92819 0.94535 0.96105 1.67752 1.06721 1.37443 1.07573 1.22103 0.98468 0.87930 0.95631 1.22334 0.97874 0.96891 1.00979 1.21788 0.96195 0.86302 1.00593 0.92661 0.97966 0.97913 0.93990 0.94588 0.89440 0.94078 0.89050 0.87641 0.84666 0.82526 0.82830 0.89738 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.95 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.34 5.69 36.00 0.20 5.55 16 10 O -0.38 -9.14 10.25 -35.23 -0.36 -9.50 16 11 C 0.07 1.20 6.00 37.16 0.22 1.42 16 12 C 0.05 0.69 5.03 -3.83 -0.02 0.67 16 13 N -0.48 -7.05 5.45 -235.11 -1.28 -8.33 16 14 C 0.07 0.91 6.41 -4.22 -0.03 0.89 16 15 C -0.08 -0.93 6.22 -104.34 -0.65 -1.58 16 16 C -0.15 -1.58 10.12 -39.53 -0.40 -1.98 16 17 C 0.10 0.97 11.19 -17.50 -0.20 0.78 16 18 N -0.49 -5.77 10.36 -13.25 -0.14 -5.90 16 19 C 0.12 1.26 11.19 -17.58 -0.20 1.07 16 20 C -0.18 -2.05 6.25 -104.38 -0.65 -2.70 16 21 C 0.08 0.93 6.65 -4.17 -0.03 0.90 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 24 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.64 6.22 -51.93 -0.32 0.31 16 27 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 28 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 29 H 0.09 1.22 5.90 -51.93 -0.31 0.92 16 30 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.08 0.87 7.74 -51.93 -0.40 0.46 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 296.81 15.07 4.47 4.47 Total: -1.00 -32.84 296.81 -8.55 -41.38 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.80 Total: -3.77 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.16 Total: -8.97 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: -0.68 Total: -40.54 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.36 Total: -9.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.84 -8.55 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857882631.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.681 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds