Wall clock time and date at job start Mon Mar 30 2020 18:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 119.81262 * 2 1 4 4 C 1.37931 * 120.27204 * 180.32575 * 3 2 1 5 5 C 1.39638 * 119.89110 * 359.41689 * 4 3 2 6 6 C 1.47439 * 120.17934 * 180.26259 * 5 4 3 7 7 N 1.29763 * 119.99840 * 180.02562 * 6 5 4 8 8 N 1.40098 * 119.99948 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99659 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47637 * 330.00145 * 9 8 7 11 11 C 1.53004 * 109.46706 * 90.00576 * 9 8 7 12 12 C 1.50697 * 109.47125 * 209.99864 * 9 8 7 13 13 H 1.08004 * 119.99813 * 0.02562 * 12 9 8 14 14 C 1.37880 * 120.00116 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00085 * 359.97438 * 14 12 9 16 16 Si 1.86809 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47131 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46934 * 119.99723 * 16 14 12 19 19 H 1.48500 * 109.46669 * 239.99922 * 16 14 12 20 20 C 1.40123 * 119.63650 * 0.27803 * 5 4 3 21 21 O 1.35852 * 120.13433 * 179.97438 * 20 5 4 22 22 C 1.38239 * 119.81670 * 179.71729 * 2 1 3 23 23 H 1.08996 * 109.47672 * 270.28045 * 1 2 3 24 24 H 1.09005 * 109.47103 * 30.28399 * 1 2 3 25 25 H 1.09008 * 109.46774 * 150.27777 * 1 2 3 26 26 H 1.08001 * 119.86516 * 0.04090 * 3 2 1 27 27 H 1.08002 * 120.05761 * 179.69873 * 4 3 2 28 28 H 1.07998 * 120.00325 * 359.97438 * 6 5 4 29 29 H 0.96996 * 119.99900 * 0.02562 * 8 7 6 30 30 H 1.08996 * 109.47563 * 59.99971 * 11 9 8 31 31 H 1.09003 * 109.46986 * 179.97438 * 11 9 8 32 32 H 1.08998 * 109.46828 * 299.99648 * 11 9 8 33 33 H 0.97003 * 120.00440 * 179.97438 * 15 14 12 34 34 H 0.96705 * 113.99497 * 90.00483 * 21 20 5 35 35 H 1.07995 * 119.94972 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2011 0.0000 4 6 3.5744 1.2121 -0.0068 5 6 4.2801 0.0072 -0.0013 6 6 5.7545 0.0116 -0.0027 7 7 6.4066 -1.1102 0.0019 8 7 7.8076 -1.1060 0.0001 9 6 8.5438 -2.3725 0.0058 10 1 7.9577 -3.1312 0.5243 11 6 8.7984 -2.8209 -1.4348 12 6 9.8610 -2.1847 0.7135 13 1 10.1232 -1.2186 1.1189 14 6 10.7313 -3.2462 0.8435 15 7 10.4117 -4.4227 0.3503 16 14 12.3637 -3.0135 1.7214 17 1 12.4825 -1.6064 2.1809 18 1 12.4303 -3.9244 2.8923 19 1 13.4762 -3.3246 0.7882 20 6 3.5792 -1.2062 0.0051 21 8 4.2555 -2.3844 0.0099 22 6 2.1943 -1.1994 0.0059 23 1 -0.3634 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5183 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6499 2.1333 0.0007 27 1 4.1079 2.1512 -0.0117 28 1 6.2917 0.9485 -0.0083 29 1 8.2900 -0.2645 -0.0042 30 1 9.3845 -2.0622 -1.9533 31 1 9.3465 -3.7630 -1.4306 32 1 7.8457 -2.9567 -1.9467 33 1 11.0241 -5.1695 0.4414 34 1 4.4521 -2.7214 0.8947 35 1 1.6506 -2.1324 0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872358575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:49 Heat of formation + Delta-G solvation = 18.146706 kcal Electronic energy + Delta-G solvation = -17123.592630 eV Core-core repulsion = 14315.555089 eV Total energy + Delta-G solvation = -2808.037541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57988 -36.56994 -36.22214 -34.16239 -32.58024 -30.95289 -29.67440 -28.11534 -26.04574 -25.18067 -22.48571 -22.12339 -20.38354 -20.02074 -17.56398 -16.94904 -16.25896 -15.65335 -14.97857 -14.84523 -14.67160 -13.87771 -13.67915 -13.48251 -12.91261 -12.57004 -12.51719 -12.42501 -11.93587 -11.63720 -11.37341 -11.30332 -11.05043 -10.81101 -10.53799 -10.33292 -10.23921 -10.17638 -9.31955 -9.00679 -8.72466 -8.54968 -8.39392 -6.74315 -6.14226 -4.22752 1.17632 1.47027 3.04704 3.22510 3.30163 3.33349 3.81719 3.98572 4.35821 4.55396 4.88351 4.95822 5.17528 5.19588 5.29317 5.39575 5.50588 5.65303 5.75053 5.95622 6.07909 6.17865 6.37942 6.62299 6.67594 6.77238 6.95345 7.04265 7.05099 7.17679 7.58172 7.78182 7.87635 8.12326 8.15085 8.30727 8.85420 9.34914 9.44225 10.91477 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.049962 B = 0.004034 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.285940 B = 6939.830937 C = 7178.849037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.098 4.098 5 C -0.037 4.037 6 C -0.027 4.027 7 N -0.166 5.166 8 N -0.623 5.623 9 C 0.298 3.702 10 H 0.043 0.957 11 C -0.150 4.150 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.127 3.873 21 O -0.474 6.474 22 C -0.148 4.148 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.366 0.634 30 H 0.024 0.976 31 H 0.090 0.910 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 8.672 0.408 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.119 4.119 5 C -0.040 4.040 6 C -0.234 4.234 7 N 0.020 4.980 8 N -0.359 5.359 9 C 0.196 3.804 10 H 0.060 0.940 11 C -0.210 4.210 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.079 3.921 21 O -0.284 6.284 22 C -0.167 4.167 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.117 0.883 29 H 0.202 0.798 30 H 0.043 0.957 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.367 7.325 -0.210 17.025 hybrid contribution 1.505 1.228 0.866 2.127 sum -13.863 8.553 0.656 16.302 Atomic orbital electron populations 1.20758 0.91381 1.02545 1.02064 1.19733 0.95782 0.92711 1.00529 1.20820 0.93861 0.97286 1.02938 1.21008 0.93789 0.96766 1.00342 1.18889 0.91286 0.92777 1.01052 1.23373 0.92297 0.94098 1.13621 1.74196 0.95317 1.26232 1.02282 1.49212 0.97138 1.09673 1.79917 1.18528 0.89315 0.79569 0.93012 0.93954 1.22197 0.98258 1.02761 0.97744 1.21286 1.01893 0.96946 1.36916 0.92205 1.24862 0.98440 0.94917 0.95423 1.69902 1.36664 1.00860 1.44837 0.86380 0.83084 0.78253 0.79310 1.19796 1.20815 1.20836 1.18584 0.89293 0.85570 0.98675 1.84847 1.76161 1.34449 1.32944 1.21227 0.93397 0.98110 1.03947 0.91398 0.91704 0.91724 0.86160 0.85721 0.88300 0.79772 0.95661 0.89192 0.96675 0.92608 0.75480 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.00 36.01 0.36 -0.55 16 2 C -0.09 -0.98 5.88 -104.55 -0.62 -1.60 16 3 C -0.13 -1.47 9.67 -39.62 -0.38 -1.85 16 4 C -0.10 -1.24 9.79 -39.17 -0.38 -1.63 16 5 C -0.04 -0.58 5.88 -104.92 -0.62 -1.20 16 6 C -0.03 -0.48 10.75 -14.68 -0.16 -0.64 16 7 N -0.17 -3.47 9.35 32.15 0.30 -3.17 16 8 N -0.62 -14.04 6.10 -5.88 -0.04 -14.07 16 9 C 0.30 7.67 3.23 -69.08 -0.22 7.44 16 10 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.15 -3.80 9.29 37.16 0.35 -3.45 16 12 C -0.53 -14.34 8.74 -34.44 -0.30 -14.64 16 13 H 0.06 1.58 7.79 -52.48 -0.41 1.18 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -24.74 11.32 55.43 0.63 -24.11 16 16 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 C 0.13 1.99 6.71 -38.78 -0.26 1.73 16 21 O -0.47 -8.10 11.38 -19.28 -0.22 -8.32 16 22 C -0.15 -1.95 9.62 -39.49 -0.38 -2.33 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 25 H 0.06 0.49 8.08 -51.92 -0.42 0.08 16 26 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.10 1.57 8.02 -52.49 -0.42 1.15 16 29 H 0.37 7.68 8.58 -182.60 -1.57 6.12 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.39 5.53 9.06 45.56 0.41 5.94 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -29.86 304.62 -7.70 -37.56 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.23 Total: 8.76 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.71 Total: -17.01 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.89 Total: -41.35 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.22 Total: -8.32 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.86 -7.70 -37.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872358575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.705 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds