Wall clock time and date at job start Mon Mar 30 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47010 * 102.65399 * 3 2 1 5 5 C 1.37097 * 119.99681 * 264.22999 * 4 3 2 6 6 H 1.07997 * 119.99681 * 197.72375 * 5 4 3 7 7 C 1.38951 * 120.00381 * 17.72016 * 5 4 3 8 8 N 1.31415 * 119.99446 * 21.39602 * 7 5 4 9 9 Si 1.86797 * 120.00163 * 201.39796 * 7 5 4 10 10 H 1.48510 * 109.46824 * 89.99925 * 9 7 5 11 11 H 1.48503 * 109.47098 * 209.99617 * 9 7 5 12 12 H 1.48498 * 109.47046 * 330.00232 * 9 7 5 13 13 C 1.34774 * 120.00037 * 84.23258 * 4 3 2 14 14 O 1.21293 * 119.99880 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00083 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47267 * 180.02562 * 15 13 4 17 17 H 1.09007 * 115.56057 * 29.31086 * 16 15 13 18 18 C 1.53002 * 117.50116 * 243.62398 * 16 15 13 19 19 C 1.52993 * 117.50215 * 174.99873 * 16 15 13 20 20 H 1.09002 * 117.49818 * 359.97438 * 19 16 15 21 21 C 1.53001 * 117.50364 * 214.97812 * 19 16 15 22 22 C 1.53005 * 117.49722 * 60.00205 * 21 19 16 23 23 C 1.52999 * 60.03056 * 107.47561 * 22 21 19 24 24 H 1.09001 * 109.47468 * 342.65511 * 3 2 1 25 25 H 1.09002 * 109.47291 * 222.64790 * 3 2 1 26 26 H 0.97006 * 119.99332 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47272 * 60.00429 * 15 13 4 28 28 H 1.09008 * 109.47035 * 300.00201 * 15 13 4 29 29 H 1.08993 * 117.50047 * 145.01571 * 18 16 15 30 30 H 1.09002 * 117.49202 * 359.97438 * 18 16 15 31 31 H 1.09001 * 115.56324 * 274.31257 * 21 19 16 32 32 H 1.08994 * 117.49705 * 214.98358 * 22 21 19 33 33 H 1.09005 * 117.49492 * 359.97438 * 22 21 19 34 34 H 1.09002 * 117.49399 * 107.50434 * 23 22 21 35 35 H 1.08994 * 117.49780 * 252.51623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3035 -1.3478 5 6 3.4376 -0.7162 -2.1982 6 1 4.0539 -0.5152 -3.0621 7 6 2.9909 -2.0081 -1.9488 8 7 1.9377 -2.2035 -1.1876 9 14 3.8875 -3.4668 -2.6955 10 1 4.9526 -3.9218 -1.7659 11 1 2.9253 -4.5742 -2.9258 12 1 4.4976 -3.0641 -3.9881 13 6 3.2096 1.5843 -1.7514 14 8 3.6134 1.8350 -2.8674 15 6 2.8338 2.7050 -0.8167 16 6 3.0539 4.0479 -1.5160 17 1 2.9405 4.0378 -2.6001 18 6 4.1059 4.9884 -0.9246 19 6 2.6182 5.3118 -0.7720 20 1 2.1743 5.1865 0.2156 21 6 2.0567 6.4647 -1.6064 22 6 0.8030 6.1890 -2.4390 23 6 0.7098 7.0544 -1.1807 24 1 2.9718 -0.9801 0.3064 25 1 2.9710 0.7567 0.6962 26 1 1.6256 -3.1054 -1.0138 27 1 3.4540 2.6552 0.0782 28 1 1.7845 2.6089 -0.5375 29 1 4.6845 5.5970 -1.6194 30 1 4.6408 4.6506 -0.0370 31 1 2.7968 7.1483 -2.0223 32 1 0.7184 6.6911 -3.4027 33 1 0.3785 5.1861 -2.3926 34 1 0.5637 8.1260 -1.3167 35 1 0.2243 6.6208 -0.3065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889039822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:52 Heat of formation + Delta-G solvation = 45.610152 kcal Electronic energy + Delta-G solvation = -17665.282107 eV Core-core repulsion = 14858.435471 eV Total energy + Delta-G solvation = -2806.846637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18715 -38.11905 -35.85210 -35.15083 -34.25821 -31.88174 -29.06257 -27.35712 -24.70920 -23.46922 -22.37335 -21.13847 -19.64745 -18.90444 -17.89044 -16.46433 -16.23742 -15.55095 -15.17363 -14.53204 -14.14362 -14.09319 -13.56577 -13.09415 -12.96263 -12.48371 -12.19336 -11.77266 -11.58128 -11.54741 -11.32451 -11.30327 -11.15269 -10.91803 -10.68695 -10.57531 -10.47549 -10.38991 -10.26211 -9.64367 -9.25645 -9.24445 -8.54417 -8.02795 -6.49063 -3.98197 3.11183 3.23009 3.27215 3.57185 3.67263 3.83433 3.98475 4.12017 4.14722 4.59656 4.85676 4.89406 4.93688 5.02772 5.18318 5.22363 5.30483 5.44382 5.54808 5.66040 5.67641 5.81328 5.93384 5.97366 5.99442 6.15298 6.20905 6.21136 6.26996 6.36233 6.51669 6.74373 7.48745 7.93360 8.30546 8.74374 9.02809 9.22168 9.77249 10.57342 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031211 B = 0.005523 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.909988 B = 5068.334117 C = 5487.248522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.246 3.754 3 C 0.222 3.778 4 N -0.447 5.447 5 C -0.313 4.313 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.879 5.879 9 Si 0.927 3.073 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.460 3.540 14 O -0.571 6.571 15 C -0.108 4.108 16 C -0.115 4.115 17 H 0.118 0.882 18 C -0.170 4.170 19 C -0.132 4.132 20 H 0.102 0.898 21 C -0.120 4.120 22 C -0.177 4.177 23 C -0.180 4.180 24 H 0.127 0.873 25 H 0.083 0.917 26 H 0.273 0.727 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 11.118 4.867 12.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.072 4.072 3 C 0.094 3.906 4 N -0.167 5.167 5 C -0.440 4.440 6 H 0.126 0.874 7 C -0.173 4.173 8 N -0.518 5.518 9 Si 0.754 3.246 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.453 6.453 15 C -0.148 4.148 16 C -0.134 4.134 17 H 0.136 0.864 18 C -0.207 4.207 19 C -0.150 4.150 20 H 0.120 0.880 21 C -0.138 4.138 22 C -0.214 4.214 23 C -0.217 4.217 24 H 0.145 0.855 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.191 11.057 4.355 11.944 hybrid contribution 0.603 -1.000 -0.262 1.197 sum 1.793 10.057 4.092 11.005 Atomic orbital electron populations 1.80895 1.13626 1.11868 1.09012 1.29338 0.95392 0.90418 0.92054 1.18728 0.81590 1.04025 0.86275 1.43652 1.56932 1.04999 1.11166 1.19728 1.29924 0.85464 1.08877 0.87421 1.25267 0.95019 0.99282 0.97687 1.69867 1.19950 1.23013 1.38994 0.85905 0.79015 0.80159 0.79571 1.20171 1.21153 1.19361 1.20070 0.83462 0.83369 0.88208 1.90527 1.50034 1.83130 1.21614 1.21205 1.02213 0.92906 0.98472 1.22153 1.02292 0.88658 1.00273 0.86412 1.23103 0.91036 1.03670 1.02858 1.21884 0.97479 0.96001 0.99596 0.87952 1.21728 0.90646 0.99179 1.02220 1.22970 1.01867 1.01472 0.95058 1.22972 1.00547 0.98983 0.99231 0.85550 0.89908 0.91685 0.89975 0.90073 0.89068 0.88946 0.87964 0.89076 0.88438 0.89176 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.25 18.54 42.15 0.78 -10.47 16 2 C 0.25 5.41 12.95 -20.76 -0.27 5.15 16 3 C 0.22 4.35 4.91 -6.83 -0.03 4.31 16 4 N -0.45 -10.38 2.60 -117.93 -0.31 -10.68 16 5 C -0.31 -8.07 9.32 -14.93 -0.14 -8.21 16 6 H 0.11 2.94 7.39 -52.49 -0.39 2.56 16 7 C 0.03 0.76 4.87 -17.47 -0.08 0.68 16 8 N -0.88 -22.24 9.48 55.50 0.53 -21.72 16 9 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 10 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.46 10.35 7.57 -10.99 -0.08 10.27 16 14 O -0.57 -14.86 15.21 5.55 0.08 -14.78 16 15 C -0.11 -1.84 4.58 -27.89 -0.13 -1.97 16 16 C -0.12 -1.84 5.06 -90.62 -0.46 -2.29 16 17 H 0.12 2.19 7.31 -51.92 -0.38 1.81 16 18 C -0.17 -2.22 9.90 -26.73 -0.26 -2.48 16 19 C -0.13 -1.70 5.59 -90.62 -0.51 -2.20 16 20 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 21 C -0.12 -1.42 5.87 -90.58 -0.53 -1.96 16 22 C -0.18 -2.14 10.17 -26.73 -0.27 -2.41 16 23 C -0.18 -1.92 10.25 -26.69 -0.27 -2.20 16 24 H 0.13 2.55 6.46 -51.93 -0.34 2.21 16 25 H 0.08 1.23 6.68 -51.93 -0.35 0.88 16 26 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.08 1.17 7.15 -51.93 -0.37 0.80 16 28 H 0.08 1.38 7.51 -51.92 -0.39 0.99 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.09 8.03 -51.93 -0.42 0.68 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -30.07 303.62 -7.14 -37.21 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.72 Total: 4.53 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.04 Total: -3.32 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 1.00 Total: -42.87 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.08 Total: -14.78 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.07 -7.14 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.816 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds