Wall clock time and date at job start Mon Mar 30 2020 18:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47010 * 102.65399 * 3 2 1 5 5 C 1.37097 * 119.99681 * 264.22999 * 4 3 2 6 6 H 1.07997 * 119.99681 * 197.72375 * 5 4 3 7 7 C 1.38951 * 120.00381 * 17.72016 * 5 4 3 8 8 N 1.31415 * 119.99446 * 21.39602 * 7 5 4 9 9 Si 1.86797 * 120.00163 * 201.39796 * 7 5 4 10 10 H 1.48510 * 109.46824 * 89.99925 * 9 7 5 11 11 H 1.48503 * 109.47098 * 209.99617 * 9 7 5 12 12 H 1.48498 * 109.47046 * 330.00232 * 9 7 5 13 13 C 1.34774 * 120.00037 * 84.23258 * 4 3 2 14 14 O 1.21293 * 119.99880 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00083 * 359.97438 * 13 4 3 16 16 C 1.52999 * 109.47267 * 180.02562 * 15 13 4 17 17 H 1.09007 * 115.56057 * 29.31086 * 16 15 13 18 18 C 1.53002 * 117.50116 * 243.62398 * 16 15 13 19 19 C 1.52993 * 117.50215 * 174.99873 * 16 15 13 20 20 H 1.09002 * 117.49818 * 359.97438 * 19 16 15 21 21 C 1.53001 * 117.50364 * 214.97812 * 19 16 15 22 22 C 1.53005 * 117.49722 * 60.00205 * 21 19 16 23 23 C 1.52999 * 60.03056 * 107.47561 * 22 21 19 24 24 H 1.09001 * 109.47468 * 342.65511 * 3 2 1 25 25 H 1.09002 * 109.47291 * 222.64790 * 3 2 1 26 26 H 0.97006 * 119.99332 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47272 * 60.00429 * 15 13 4 28 28 H 1.09008 * 109.47035 * 300.00201 * 15 13 4 29 29 H 1.08993 * 117.50047 * 145.01571 * 18 16 15 30 30 H 1.09002 * 117.49202 * 359.97438 * 18 16 15 31 31 H 1.09001 * 115.56324 * 274.31257 * 21 19 16 32 32 H 1.08994 * 117.49705 * 214.98358 * 22 21 19 33 33 H 1.09005 * 117.49492 * 359.97438 * 22 21 19 34 34 H 1.09002 * 117.49399 * 107.50434 * 23 22 21 35 35 H 1.08994 * 117.49780 * 252.51623 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3035 -1.3478 5 6 3.4376 -0.7162 -2.1982 6 1 4.0539 -0.5152 -3.0621 7 6 2.9909 -2.0081 -1.9488 8 7 1.9377 -2.2035 -1.1876 9 14 3.8875 -3.4668 -2.6955 10 1 4.9526 -3.9218 -1.7659 11 1 2.9253 -4.5742 -2.9258 12 1 4.4976 -3.0641 -3.9881 13 6 3.2096 1.5843 -1.7514 14 8 3.6134 1.8350 -2.8674 15 6 2.8338 2.7050 -0.8167 16 6 3.0539 4.0479 -1.5160 17 1 2.9405 4.0378 -2.6001 18 6 4.1059 4.9884 -0.9246 19 6 2.6182 5.3118 -0.7720 20 1 2.1743 5.1865 0.2156 21 6 2.0567 6.4647 -1.6064 22 6 0.8030 6.1890 -2.4390 23 6 0.7098 7.0544 -1.1807 24 1 2.9718 -0.9801 0.3064 25 1 2.9710 0.7567 0.6962 26 1 1.6256 -3.1054 -1.0138 27 1 3.4540 2.6552 0.0782 28 1 1.7845 2.6089 -0.5375 29 1 4.6845 5.5970 -1.6194 30 1 4.6408 4.6506 -0.0370 31 1 2.7968 7.1483 -2.0223 32 1 0.7184 6.6911 -3.4027 33 1 0.3785 5.1861 -2.3926 34 1 0.5637 8.1260 -1.3167 35 1 0.2243 6.6208 -0.3065 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889039822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:52 Heat of formation + Delta-G solvation = 29.477880 kcal Electronic energy + Delta-G solvation = -17665.981655 eV Core-core repulsion = 14858.435471 eV Total energy + Delta-G solvation = -2807.546185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76260 -39.32635 -37.58052 -36.37398 -35.99598 -33.76527 -30.52315 -29.04373 -26.49346 -24.49066 -23.27676 -22.42542 -20.75569 -20.42671 -19.72253 -18.15489 -17.88205 -16.83901 -16.31832 -16.16951 -15.74341 -15.61611 -14.75959 -14.69961 -14.47165 -14.04655 -13.79406 -13.43407 -13.13040 -13.09699 -12.87589 -12.48516 -12.34143 -12.29905 -12.20624 -12.12510 -11.94481 -11.69347 -11.46004 -11.10313 -10.68453 -10.46773 -10.20977 -9.90929 -8.39814 -5.95396 1.40373 1.48078 1.58248 1.83571 2.08228 2.26084 2.36197 2.68273 3.00617 3.12806 3.16115 3.60906 3.71740 3.91452 3.94206 4.10375 4.19701 4.30968 4.38078 4.48203 4.59180 4.72034 4.80981 4.82133 4.88526 4.94854 5.00910 5.05490 5.27825 5.31508 5.37328 5.49171 5.50888 6.06404 6.42459 7.01021 7.14516 7.38167 7.96317 8.64092 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.031211 B = 0.005523 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.909988 B = 5068.334117 C = 5487.248522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.258 3.742 3 C 0.222 3.778 4 N -0.459 5.459 5 C -0.341 4.341 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.451 3.549 14 O -0.617 6.617 15 C -0.093 4.093 16 C -0.148 4.148 17 H 0.080 0.920 18 C -0.156 4.156 19 C -0.112 4.112 20 H 0.118 0.882 21 C -0.130 4.130 22 C -0.195 4.195 23 C -0.161 4.161 24 H 0.124 0.876 25 H 0.140 0.860 26 H 0.274 0.726 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 12.091 6.770 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.059 4.059 3 C 0.095 3.905 4 N -0.179 5.179 5 C -0.469 4.469 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.811 3.189 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.242 3.758 14 O -0.502 6.502 15 C -0.133 4.133 16 C -0.166 4.166 17 H 0.099 0.901 18 C -0.193 4.193 19 C -0.130 4.130 20 H 0.135 0.865 21 C -0.148 4.148 22 C -0.232 4.232 23 C -0.198 4.198 24 H 0.141 0.859 25 H 0.158 0.842 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.828 12.034 6.290 13.701 hybrid contribution 0.385 -1.281 -0.919 1.623 sum 2.213 10.753 5.371 12.221 Atomic orbital electron populations 1.80896 1.14803 1.13225 1.10126 1.29814 0.95865 0.89273 0.90972 1.19084 0.80039 1.05884 0.85477 1.43845 1.56934 1.04888 1.12254 1.19608 1.30838 0.87012 1.09405 0.90243 1.25875 0.95176 1.00777 0.97877 1.69948 1.20370 1.23441 1.39560 0.85031 0.78168 0.77048 0.78676 1.18251 1.21272 1.20408 1.21076 0.81957 0.84280 0.88489 1.90495 1.51801 1.83968 1.23964 1.21149 1.02720 0.91025 0.98381 1.21950 1.06542 0.89593 0.98562 0.90149 1.23231 0.91169 1.01774 1.03077 1.21964 0.97540 0.93984 0.99521 0.86458 1.21839 0.91227 0.99318 1.02371 1.22958 1.02750 1.01012 0.96476 1.23062 0.98852 0.99818 0.98070 0.85872 0.84220 0.91614 0.86134 0.89989 0.88665 0.86888 0.86993 0.88359 0.90677 0.87163 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.95 18.54 20.01 0.37 -23.58 16 2 C 0.26 11.09 12.95 89.44 1.16 12.25 16 3 C 0.22 8.32 4.91 84.57 0.42 8.74 16 4 N -0.46 -21.27 2.60 -645.41 -1.68 -22.94 16 5 C -0.34 -17.90 9.32 84.04 0.78 -17.12 16 6 H 0.08 4.54 7.39 -2.91 -0.02 4.52 16 7 C 0.00 0.24 4.87 84.93 0.41 0.65 16 8 N -0.89 -44.90 9.48 21.66 0.21 -44.69 16 9 Si 0.99 40.32 29.60 68.60 2.03 42.35 16 10 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 11 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.45 20.42 7.57 87.66 0.66 21.08 16 14 O -0.62 -33.36 15.21 -3.07 -0.05 -33.40 16 15 C -0.09 -3.03 4.58 29.85 0.14 -2.89 16 16 C -0.15 -4.59 5.06 -10.80 -0.05 -4.65 16 17 H 0.08 3.12 7.31 -2.38 -0.02 3.10 16 18 C -0.16 -3.68 9.90 30.59 0.30 -3.37 16 19 C -0.11 -2.63 5.59 -10.80 -0.06 -2.69 16 20 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 21 C -0.13 -2.84 5.87 -10.77 -0.06 -2.90 16 22 C -0.19 -4.61 10.17 30.60 0.31 -4.30 16 23 C -0.16 -3.04 10.25 30.62 0.31 -2.73 16 24 H 0.12 4.77 6.46 -2.39 -0.02 4.75 16 25 H 0.14 3.60 6.68 -2.39 -0.02 3.58 16 26 H 0.27 13.27 8.31 -92.70 -0.77 12.50 16 27 H 0.12 2.95 7.15 -2.39 -0.02 2.93 16 28 H 0.08 2.66 7.51 -2.38 -0.02 2.64 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.11 2.21 8.03 -2.39 -0.02 2.20 16 31 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.08 303.62 6.29 -60.78 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.09 Total: 19.42 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 4.32 Total: 2.06 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -1.10 Total: -91.21 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -67.08 6.29 -60.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889039822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.261 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds