Wall clock time and date at job start Mon Mar 30 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38554 * 120.37728 * 2 1 4 4 C 1.39250 * 118.35624 * 179.75072 * 3 2 1 5 5 N 1.39945 * 120.48642 * 180.28549 * 4 3 2 6 6 C 1.34781 * 120.00337 * 32.81523 * 5 4 3 7 7 O 1.21288 * 119.99905 * 5.26667 * 6 5 4 8 8 C 1.50700 * 119.99983 * 185.26801 * 6 5 4 9 9 H 1.08997 * 109.47284 * 300.00273 * 8 6 5 10 10 C 1.52998 * 109.47082 * 60.00137 * 8 6 5 11 11 C 1.50699 * 109.46839 * 179.97438 * 8 6 5 12 12 H 1.08001 * 120.00356 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99955 * 180.02562 * 11 8 6 14 14 N 1.31512 * 119.99982 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00106 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47028 * 89.99779 * 15 13 11 17 17 H 1.48491 * 109.47220 * 210.00207 * 15 13 11 18 18 H 1.48501 * 109.46886 * 330.00373 * 15 13 11 19 19 C 1.38884 * 119.02072 * 0.53413 * 4 3 2 20 20 N 1.31789 * 120.66489 * 359.45377 * 19 4 3 21 21 C 1.31884 * 121.79382 * 0.27618 * 20 19 4 22 22 C 1.50706 * 119.53920 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.46934 * 269.97489 * 1 2 3 24 24 H 1.09001 * 109.47007 * 29.97825 * 1 2 3 25 25 H 1.08995 * 109.46926 * 149.97904 * 1 2 3 26 26 H 1.07997 * 120.81994 * 0.02562 * 3 2 1 27 27 H 0.97004 * 119.99802 * 212.81765 * 5 4 3 28 28 H 1.09004 * 109.47322 * 179.97438 * 10 8 6 29 29 H 1.08995 * 109.47171 * 299.99942 * 10 8 6 30 30 H 1.09005 * 109.47252 * 59.99982 * 10 8 6 31 31 H 0.97003 * 119.99897 * 180.02562 * 14 13 11 32 32 H 1.08001 * 119.66792 * 179.73124 * 19 4 3 33 33 H 1.09001 * 109.46700 * 90.00096 * 22 21 20 34 34 H 1.08996 * 109.47157 * 210.00349 * 22 21 20 35 35 H 1.09002 * 109.47048 * 330.00258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1953 0.0000 4 6 3.5993 1.1462 0.0053 5 7 4.3513 2.3264 0.0116 6 6 3.8838 3.4202 0.6453 7 8 2.8586 3.3556 1.2902 8 6 4.6348 4.7234 0.5526 9 1 5.6387 4.5938 0.9569 10 6 4.7268 5.1560 -0.9121 11 6 3.9069 5.7799 1.3431 12 1 2.9921 5.5324 1.8612 13 6 4.4086 7.0627 1.4050 14 7 3.7736 7.9846 2.0952 15 14 5.9904 7.4912 0.5084 16 1 5.6709 7.9485 -0.8679 17 1 6.6955 8.5747 1.2389 18 1 6.8620 6.2907 0.4412 19 6 4.2298 -0.0912 -0.0009 20 7 3.5250 -1.2048 -0.0009 21 6 2.2062 -1.1924 -0.0004 22 6 1.4509 -2.4965 0.0001 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6873 2.1417 0.0004 27 1 5.2092 2.3573 -0.4403 28 1 5.2696 6.0988 -0.9791 29 1 5.2530 4.3919 -1.4842 30 1 3.7229 5.2856 -1.3164 31 1 4.1265 8.8871 2.1384 32 1 5.3087 -0.1415 -0.0013 33 1 1.2692 -2.8106 1.0280 34 1 0.4985 -2.3650 -0.5134 35 1 2.0388 -3.2571 -0.5137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893809137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:57 Heat of formation + Delta-G solvation = -5.327119 kcal Electronic energy + Delta-G solvation = -17704.778209 eV Core-core repulsion = 14895.722766 eV Total energy + Delta-G solvation = -2809.055443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65069 -38.97041 -35.02121 -34.02323 -33.59660 -31.83277 -30.93081 -27.89674 -26.74622 -25.24446 -23.42833 -22.70923 -21.16752 -19.61222 -17.30969 -16.91767 -16.57711 -15.84461 -15.62067 -14.79105 -14.64387 -14.23628 -13.52697 -13.31560 -13.20896 -12.94664 -12.88990 -12.67259 -12.41933 -12.34021 -12.05930 -11.76859 -11.42641 -11.13143 -10.71534 -10.47945 -10.37233 -9.73153 -9.58448 -9.22897 -9.18239 -8.77767 -8.65779 -7.92086 -6.13204 -4.14919 1.16502 1.43539 3.17031 3.23876 3.27295 3.31334 3.43042 3.92016 4.30263 4.43621 4.77908 4.97094 5.02733 5.06083 5.15769 5.42874 5.52044 5.53695 5.63014 5.68099 5.75834 5.90685 5.98113 6.00532 6.15958 6.24911 6.32086 6.38774 6.55973 6.60083 7.02758 7.03717 7.40333 7.80947 8.07544 8.43006 8.77492 9.04608 9.44418 10.99483 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.044366 B = 0.005147 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.967966 B = 5438.696172 C = 5828.467876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C -0.083 4.083 4 C 0.115 3.885 5 N -0.684 5.684 6 C 0.527 3.473 7 O -0.508 6.508 8 C -0.002 4.002 9 H 0.056 0.944 10 C -0.146 4.146 11 C -0.511 4.511 12 H 0.094 0.906 13 C 0.072 3.928 14 N -0.893 5.893 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.267 1.267 19 C 0.061 3.939 20 N -0.464 5.464 21 C 0.090 3.910 22 C -0.099 4.099 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.409 0.591 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.266 0.734 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 -16.005 -7.596 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.117 4.117 3 C -0.111 4.111 4 C 0.017 3.983 5 N -0.331 5.331 6 C 0.317 3.683 7 O -0.380 6.380 8 C -0.023 4.023 9 H 0.074 0.926 10 C -0.204 4.204 11 C -0.549 4.549 12 H 0.112 0.888 13 C -0.130 4.130 14 N -0.530 5.530 15 Si 0.714 3.286 16 H -0.204 1.204 17 H -0.222 1.222 18 H -0.192 1.192 19 C -0.099 4.099 20 N -0.173 5.173 21 C -0.049 4.049 22 C -0.156 4.156 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.165 0.835 27 H 0.245 0.755 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.086 -16.547 -7.041 18.015 hybrid contribution 1.039 1.383 -0.644 1.846 sum -0.047 -15.164 -7.685 17.000 Atomic orbital electron populations 1.20802 0.90312 1.02942 1.02782 1.20596 0.97444 0.92835 1.00858 1.21595 0.92626 0.99295 0.97615 1.18916 0.92043 0.87723 0.99630 1.44002 1.23360 1.09977 1.55711 1.21641 0.85711 0.84755 0.76185 1.90601 1.24503 1.84241 1.38628 1.19335 0.97433 0.90305 0.95270 0.92611 1.22139 1.01588 0.99938 0.96706 1.20887 1.11253 0.92153 1.30573 0.88816 1.24970 0.96780 0.96156 0.95078 1.69873 1.39352 1.03010 1.40786 0.86912 0.84171 0.78163 0.79310 1.20419 1.22168 1.19216 1.22458 0.99978 0.86251 1.01248 1.67381 1.07718 1.30234 1.11957 1.20959 0.89683 0.94880 0.99367 1.20679 0.99086 0.93157 1.02724 0.90721 0.91269 0.90959 0.83461 0.75525 0.92955 0.94680 0.92235 0.92419 0.82829 0.90846 0.90688 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.62 36.01 0.35 -0.85 16 2 C -0.11 -1.61 5.89 -104.51 -0.62 -2.23 16 3 C -0.08 -1.38 8.45 -39.09 -0.33 -1.71 16 4 C 0.11 1.84 6.31 -83.54 -0.53 1.32 16 5 N -0.68 -11.05 5.21 -9.76 -0.05 -11.10 16 6 C 0.53 11.06 6.91 -10.98 -0.08 10.98 16 7 O -0.51 -12.48 13.16 5.55 0.07 -12.40 16 8 C 0.00 -0.04 2.23 -92.92 -0.21 -0.25 16 9 H 0.06 1.20 7.20 -51.93 -0.37 0.82 16 10 C -0.15 -2.85 8.57 37.16 0.32 -2.53 16 11 C -0.51 -14.30 8.95 -34.44 -0.31 -14.61 16 12 H 0.09 3.00 7.00 -52.49 -0.37 2.63 16 13 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 14 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 15 Si 0.88 20.68 24.37 -169.99 -4.14 16.54 16 16 H -0.28 -6.27 6.87 56.52 0.39 -5.88 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -5.76 6.53 56.52 0.37 -5.39 16 19 C 0.06 0.88 11.12 -17.33 -0.19 0.68 16 20 N -0.46 -6.88 10.26 -9.31 -0.10 -6.98 16 21 C 0.09 1.22 6.78 -82.57 -0.56 0.66 16 22 C -0.10 -0.97 9.76 36.01 0.35 -0.62 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 25 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 26 H 0.15 2.71 6.49 -52.49 -0.34 2.37 16 27 H 0.41 5.16 8.41 -40.82 -0.34 4.82 16 28 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 29 H 0.03 0.53 7.69 -51.93 -0.40 0.13 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.58 5.93 -51.93 -0.31 0.27 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -32.98 286.48 -5.35 -38.33 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.33 Total: 4.78 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.90 Total: -7.21 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.63 Total: -44.34 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.40 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.98 -5.35 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893809137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.000 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds