Wall clock time and date at job start Mon Mar 30 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38554 * 120.37728 * 2 1 4 4 C 1.39250 * 118.35624 * 179.75072 * 3 2 1 5 5 N 1.39945 * 120.48642 * 180.28549 * 4 3 2 6 6 C 1.34781 * 120.00337 * 32.81523 * 5 4 3 7 7 O 1.21288 * 119.99905 * 5.26667 * 6 5 4 8 8 C 1.50700 * 119.99983 * 185.26801 * 6 5 4 9 9 H 1.08997 * 109.47284 * 300.00273 * 8 6 5 10 10 C 1.52998 * 109.47082 * 60.00137 * 8 6 5 11 11 C 1.50699 * 109.46839 * 179.97438 * 8 6 5 12 12 H 1.08001 * 120.00356 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99955 * 180.02562 * 11 8 6 14 14 N 1.31512 * 119.99982 * 180.02562 * 13 11 8 15 15 Si 1.86800 * 120.00106 * 0.02562 * 13 11 8 16 16 H 1.48500 * 109.47028 * 89.99779 * 15 13 11 17 17 H 1.48491 * 109.47220 * 210.00207 * 15 13 11 18 18 H 1.48501 * 109.46886 * 330.00373 * 15 13 11 19 19 C 1.38884 * 119.02072 * 0.53413 * 4 3 2 20 20 N 1.31789 * 120.66489 * 359.45377 * 19 4 3 21 21 C 1.31884 * 121.79382 * 0.27618 * 20 19 4 22 22 C 1.50706 * 119.53920 * 180.02562 * 21 20 19 23 23 H 1.08996 * 109.46934 * 269.97489 * 1 2 3 24 24 H 1.09001 * 109.47007 * 29.97825 * 1 2 3 25 25 H 1.08995 * 109.46926 * 149.97904 * 1 2 3 26 26 H 1.07997 * 120.81994 * 0.02562 * 3 2 1 27 27 H 0.97004 * 119.99802 * 212.81765 * 5 4 3 28 28 H 1.09004 * 109.47322 * 179.97438 * 10 8 6 29 29 H 1.08995 * 109.47171 * 299.99942 * 10 8 6 30 30 H 1.09005 * 109.47252 * 59.99982 * 10 8 6 31 31 H 0.97003 * 119.99897 * 180.02562 * 14 13 11 32 32 H 1.08001 * 119.66792 * 179.73124 * 19 4 3 33 33 H 1.09001 * 109.46700 * 90.00096 * 22 21 20 34 34 H 1.08996 * 109.47157 * 210.00349 * 22 21 20 35 35 H 1.09002 * 109.47048 * 330.00258 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1953 0.0000 4 6 3.5993 1.1462 0.0053 5 7 4.3513 2.3264 0.0116 6 6 3.8838 3.4202 0.6453 7 8 2.8586 3.3556 1.2902 8 6 4.6348 4.7234 0.5526 9 1 5.6387 4.5938 0.9569 10 6 4.7268 5.1560 -0.9121 11 6 3.9069 5.7799 1.3431 12 1 2.9921 5.5324 1.8612 13 6 4.4086 7.0627 1.4050 14 7 3.7736 7.9846 2.0952 15 14 5.9904 7.4912 0.5084 16 1 5.6709 7.9485 -0.8679 17 1 6.6955 8.5747 1.2389 18 1 6.8620 6.2907 0.4412 19 6 4.2298 -0.0912 -0.0009 20 7 3.5250 -1.2048 -0.0009 21 6 2.2062 -1.1924 -0.0004 22 6 1.4509 -2.4965 0.0001 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6873 2.1417 0.0004 27 1 5.2092 2.3573 -0.4403 28 1 5.2696 6.0988 -0.9791 29 1 5.2530 4.3919 -1.4842 30 1 3.7229 5.2856 -1.3164 31 1 4.1265 8.8871 2.1384 32 1 5.3087 -0.1415 -0.0013 33 1 1.2692 -2.8106 1.0280 34 1 0.4985 -2.3650 -0.5134 35 1 2.0388 -3.2571 -0.5137 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893809137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:57 Heat of formation + Delta-G solvation = -29.672039 kcal Electronic energy + Delta-G solvation = -17705.833884 eV Core-core repulsion = 14895.722766 eV Total energy + Delta-G solvation = -2810.111118 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.91596 -40.42376 -36.41090 -35.89803 -34.68484 -33.58307 -32.32433 -28.91078 -27.84753 -27.13843 -25.02969 -23.85800 -22.45915 -21.15231 -18.91837 -18.62601 -17.82246 -17.23916 -17.10263 -16.49632 -15.84969 -15.67479 -15.19127 -14.68617 -14.41206 -14.28340 -14.08986 -13.75386 -13.70832 -13.57483 -13.33704 -12.97810 -12.86018 -12.57336 -12.30399 -12.16647 -11.75711 -11.48835 -11.27170 -10.95715 -10.76559 -10.45776 -10.14786 -9.13465 -8.28981 -6.38030 0.02509 0.23891 1.33715 1.40240 1.51443 1.69164 2.05779 2.33385 2.77350 3.04831 3.45063 3.71316 3.88789 3.91986 3.98171 4.16701 4.36811 4.52211 4.55242 4.64207 4.67757 4.75254 4.78116 4.88572 4.96353 5.01001 5.09580 5.17206 5.31843 5.39938 5.44295 5.48120 5.83892 6.19917 6.50612 6.77196 6.96017 7.18995 7.31009 8.88515 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.044366 B = 0.005147 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.967966 B = 5438.696172 C = 5828.467876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C -0.107 4.107 4 C 0.090 3.910 5 N -0.660 5.660 6 C 0.528 3.472 7 O -0.558 6.558 8 C -0.004 4.004 9 H 0.077 0.923 10 C -0.141 4.141 11 C -0.524 4.524 12 H 0.030 0.970 13 C 0.008 3.992 14 N -0.952 5.952 15 Si 0.959 3.041 16 H -0.260 1.260 17 H -0.301 1.301 18 H -0.227 1.227 19 C 0.071 3.929 20 N -0.477 5.477 21 C 0.090 3.910 22 C -0.098 4.098 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.429 0.571 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.268 0.732 32 H 0.185 0.815 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -18.464 -9.739 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.135 4.135 4 C -0.007 4.007 5 N -0.308 5.308 6 C 0.318 3.682 7 O -0.434 6.434 8 C -0.026 4.026 9 H 0.095 0.905 10 C -0.199 4.199 11 C -0.563 4.563 12 H 0.049 0.951 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.784 3.216 16 H -0.186 1.186 17 H -0.229 1.229 18 H -0.150 1.150 19 C -0.089 4.089 20 N -0.186 5.186 21 C -0.048 4.048 22 C -0.155 4.155 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.268 0.732 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.202 0.798 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.049 -19.076 -9.228 21.216 hybrid contribution 0.234 2.024 0.084 2.039 sum 1.283 -17.051 -9.144 19.391 Atomic orbital electron populations 1.20886 0.88211 1.04268 1.03382 1.20925 0.99111 0.92137 1.00155 1.21598 0.93488 0.99238 0.99150 1.19054 0.91903 0.88087 1.01626 1.43509 1.23836 1.08843 1.54580 1.21398 0.84957 0.85640 0.76160 1.90594 1.26649 1.85064 1.41131 1.19277 0.97411 0.89375 0.96527 0.90507 1.22046 1.01716 1.01380 0.94715 1.21053 1.09818 0.94388 1.31000 0.95137 1.26031 1.01360 0.95580 0.95925 1.70073 1.42105 1.03699 1.43262 0.85714 0.78879 0.79011 0.78018 1.18616 1.22881 1.14971 1.22871 1.01377 0.85179 0.99506 1.67522 1.08386 1.30184 1.12518 1.21623 0.89657 0.96227 0.97315 1.20814 0.99708 0.91106 1.03871 0.90375 0.91748 0.87853 0.86384 0.73172 0.93260 0.89361 0.93524 0.92340 0.79775 0.89720 0.88383 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 9.62 71.24 0.69 -1.55 16 2 C -0.12 -3.29 5.89 -19.79 -0.12 -3.40 16 3 C -0.11 -3.60 8.45 22.59 0.19 -3.41 16 4 C 0.09 2.82 6.31 38.24 0.24 3.06 16 5 N -0.66 -20.36 5.21 -303.19 -1.58 -21.94 16 6 C 0.53 22.38 6.91 87.66 0.61 22.98 16 7 O -0.56 -29.07 13.16 -3.06 -0.04 -29.11 16 8 C 0.00 -0.19 2.23 -12.29 -0.03 -0.21 16 9 H 0.08 3.07 7.20 -2.39 -0.02 3.05 16 10 C -0.14 -5.11 8.57 71.98 0.62 -4.50 16 11 C -0.52 -30.62 8.95 25.60 0.23 -30.39 16 12 H 0.03 2.11 7.00 -2.91 -0.02 2.09 16 13 C 0.01 0.45 5.45 84.66 0.46 0.91 16 14 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 15 Si 0.96 41.82 24.37 68.60 1.67 43.49 16 16 H -0.26 -10.62 6.87 99.48 0.68 -9.93 16 17 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.23 -8.38 6.53 99.48 0.65 -7.73 16 19 C 0.07 1.86 11.12 84.85 0.94 2.80 16 20 N -0.48 -12.98 10.26 -183.38 -1.88 -14.87 16 21 C 0.09 2.25 6.78 42.55 0.29 2.54 16 22 C -0.10 -1.58 9.76 71.24 0.70 -0.89 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 25 H 0.10 1.40 5.95 -2.39 -0.01 1.39 16 26 H 0.12 4.66 6.49 -2.91 -0.02 4.64 16 27 H 0.43 9.36 8.41 -92.70 -0.78 8.58 16 28 H 0.05 1.82 3.27 -2.38 -0.01 1.82 16 29 H 0.09 2.26 7.69 -2.39 -0.02 2.24 16 30 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.12 5.93 -2.39 -0.01 1.11 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -78.02 286.48 3.54 -74.48 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.26 Total: 20.08 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 4.81 Total: -12.06 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -3.16 Total: -96.88 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.04 Total: -29.11 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.67 Total: 43.49 kcal Total: -78.02 3.54 -74.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893809137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.807 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds