Wall clock time and date at job start Mon Mar 30 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38600 * 120.32308 * 2 1 4 4 N 1.31494 * 120.89672 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64674 * 359.97345 * 4 3 2 6 6 C 1.48170 * 119.72508 * 179.97438 * 5 4 3 7 7 O 1.21506 * 120.00180 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99795 * 359.97438 * 6 5 4 9 9 C 1.46496 * 119.99965 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.50699 * 109.47248 * 205.00258 * 9 8 6 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99546 * 180.02562 * 14 12 9 16 16 Si 1.86797 * 120.00061 * 359.97438 * 14 12 9 17 17 H 1.48496 * 109.47023 * 90.00536 * 16 14 12 18 18 H 1.48503 * 109.47041 * 210.00292 * 16 14 12 19 19 H 1.48500 * 109.47388 * 329.99951 * 16 14 12 20 20 C 1.39270 * 120.55477 * 0.25593 * 5 4 3 21 21 C 1.38584 * 120.32235 * 180.02562 * 2 1 3 22 22 C 1.50702 * 120.75828 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47333 * 90.00224 * 1 2 3 24 24 H 1.09003 * 109.47552 * 209.99761 * 1 2 3 25 25 H 1.08997 * 109.47290 * 330.00290 * 1 2 3 26 26 H 1.07995 * 119.55236 * 0.02562 * 3 2 1 27 27 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 29 29 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 30 30 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 31 31 H 0.97005 * 119.99945 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.47136 * 179.72044 * 20 5 4 33 33 H 1.09004 * 109.47103 * 89.99217 * 22 21 2 34 34 H 1.08991 * 109.47285 * 209.99620 * 22 21 2 35 35 H 1.08997 * 109.47264 * 330.00161 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0017 7 8 6.3625 -0.8738 -0.0021 8 7 6.3321 1.3465 -0.0032 9 6 7.7956 1.4103 -0.0049 10 1 8.1960 0.5855 0.5845 11 6 8.3090 1.3061 -1.4425 12 6 8.2421 2.7191 0.5941 13 1 7.5090 3.4318 0.9418 14 6 9.5866 3.0065 0.6984 15 7 9.9761 4.1485 1.2217 16 14 10.8546 1.7734 0.0977 17 1 11.1630 2.0366 -1.3308 18 1 12.0945 1.9057 0.9043 19 1 10.3145 0.3977 0.2423 20 6 3.5923 -1.1519 -0.0053 21 6 2.2067 -1.1963 -0.0005 22 6 1.4779 -2.5153 -0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6647 2.1305 0.0004 27 1 5.8109 2.1647 -0.0032 28 1 7.9861 0.3594 -1.8759 29 1 7.9087 2.1309 -2.0320 30 1 9.3979 1.3540 -1.4439 31 1 10.9220 4.3509 1.2947 32 1 4.1694 -2.0647 -0.0099 33 1 1.3017 -2.8331 -1.0283 34 1 2.0814 -3.2638 0.5128 35 1 0.5234 -2.4031 0.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931156858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:06 Heat of formation + Delta-G solvation = -8.843847 kcal Electronic energy + Delta-G solvation = -17503.102644 eV Core-core repulsion = 14693.894704 eV Total energy + Delta-G solvation = -2809.207940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58205 -38.60870 -35.02626 -34.69148 -32.44917 -32.29134 -29.96932 -28.48151 -27.15204 -25.14922 -23.19279 -22.80865 -20.82857 -19.50254 -17.80255 -16.88100 -16.23963 -15.36016 -15.15783 -14.95683 -14.84818 -14.16360 -14.03654 -13.20470 -13.14714 -13.08950 -12.96856 -12.80322 -12.56588 -12.16541 -12.13890 -11.82128 -11.59454 -11.24002 -10.78450 -10.15335 -9.88910 -9.61553 -9.53452 -9.20132 -9.14981 -8.95515 -8.71216 -8.10065 -6.16110 -4.18349 0.74018 1.19041 3.10164 3.26897 3.38425 3.43234 3.78110 4.07204 4.34056 4.35862 4.51673 4.71865 4.74017 4.83851 5.18309 5.19857 5.29652 5.32866 5.38996 5.49217 5.56354 5.76613 5.79283 5.98887 6.19264 6.35284 6.41574 6.58763 6.61835 6.87771 7.23814 7.30372 7.54580 7.81521 8.22390 8.58919 8.80272 8.94063 9.44323 10.96151 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.044612 B = 0.004909 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.483392 B = 5702.189511 C = 6132.031949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.130 4.130 3 C 0.101 3.899 4 N -0.456 5.456 5 C 0.088 3.912 6 C 0.556 3.444 7 O -0.552 6.552 8 N -0.676 5.676 9 C 0.233 3.767 10 H 0.050 0.950 11 C -0.161 4.161 12 C -0.533 4.533 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.893 5.893 16 Si 0.885 3.115 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.262 1.262 20 C -0.114 4.114 21 C -0.055 4.055 22 C -0.117 4.117 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.160 0.840 27 H 0.406 0.594 28 H 0.036 0.964 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.267 0.733 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.005 -9.497 -3.542 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C -0.059 4.059 4 N -0.167 5.167 5 C -0.050 4.050 6 C 0.339 3.661 7 O -0.431 6.431 8 N -0.323 5.323 9 C 0.130 3.870 10 H 0.068 0.932 11 C -0.219 4.219 12 C -0.571 4.571 13 H 0.100 0.900 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.715 3.285 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.186 1.186 20 C -0.135 4.135 21 C -0.063 4.063 22 C -0.173 4.173 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.177 0.823 27 H 0.242 0.758 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.841 -9.283 -3.480 20.411 hybrid contribution 0.113 -0.785 -0.333 0.860 sum -17.728 -10.068 -3.814 20.741 Atomic orbital electron populations 1.20787 0.90188 1.03261 1.02656 1.20966 0.97544 0.93736 1.00971 1.22693 0.89487 0.97472 0.96267 1.67615 1.08425 1.30474 1.10195 1.21460 0.95065 0.89307 0.99200 1.17901 0.85270 0.84847 0.78093 1.90723 1.65763 1.34406 1.52181 1.46103 1.09255 1.07304 1.69643 1.19196 0.75635 0.99053 0.93106 0.93214 1.22449 1.00067 0.99807 0.99579 1.21045 0.93474 1.01209 1.41405 0.90034 1.24825 0.98172 0.95165 0.94357 1.69875 1.16323 1.22589 1.44174 0.86876 0.80704 0.82697 0.78208 1.20282 1.22152 1.18642 1.22012 0.93983 0.99318 0.98137 1.20163 0.93304 0.95699 0.97150 1.20858 1.00317 0.93188 1.02929 0.90747 0.90988 0.91035 0.82311 0.75826 0.94508 0.92684 0.93336 0.92317 0.83583 0.90468 0.90860 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.65 36.01 0.35 -0.39 16 2 C -0.13 -1.36 5.91 -104.36 -0.62 -1.98 16 3 C 0.10 1.24 10.86 -17.56 -0.19 1.05 16 4 N -0.46 -7.32 9.54 -9.80 -0.09 -7.41 16 5 C 0.09 1.52 6.75 -83.01 -0.56 0.96 16 6 C 0.56 11.75 7.78 -12.18 -0.09 11.65 16 7 O -0.55 -12.97 15.99 5.36 0.09 -12.88 16 8 N -0.68 -14.99 5.06 -55.78 -0.28 -15.27 16 9 C 0.23 5.86 2.15 -69.08 -0.15 5.71 16 10 H 0.05 1.35 6.64 -51.93 -0.34 1.01 16 11 C -0.16 -3.75 8.96 37.16 0.33 -3.42 16 12 C -0.53 -14.99 9.31 -34.44 -0.32 -15.31 16 13 H 0.08 2.42 7.98 -52.49 -0.42 2.01 16 14 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 15 N -0.89 -26.96 13.96 55.43 0.77 -26.18 16 16 Si 0.89 22.16 24.37 -169.99 -4.14 18.02 16 17 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 20 C -0.11 -1.65 9.34 -39.05 -0.36 -2.02 16 21 C -0.06 -0.62 5.91 -104.35 -0.62 -1.24 16 22 C -0.12 -0.89 9.67 36.01 0.35 -0.54 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.40 6.06 -51.93 -0.31 0.08 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.41 8.51 7.87 -40.82 -0.32 8.19 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 31 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.44 6.07 -51.93 -0.32 0.13 16 LS Contribution 291.82 15.07 4.40 4.40 Total: -1.00 -32.68 291.82 -5.66 -38.34 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.42 Total: 4.36 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.98 Total: -3.36 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.40 Total: -48.87 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.68 -5.66 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.498 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds