Wall clock time and date at job start Mon Mar 30 2020 18:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38600 * 120.32308 * 2 1 4 4 N 1.31494 * 120.89672 * 180.02562 * 3 2 1 5 5 C 1.32743 * 121.64674 * 359.97345 * 4 3 2 6 6 C 1.48170 * 119.72508 * 179.97438 * 5 4 3 7 7 O 1.21506 * 120.00180 * 180.02562 * 6 5 4 8 8 N 1.34779 * 119.99795 * 359.97438 * 6 5 4 9 9 C 1.46496 * 119.99965 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.47464 * 325.00834 * 9 8 6 11 11 C 1.53006 * 109.46995 * 85.00573 * 9 8 6 12 12 C 1.50699 * 109.47248 * 205.00258 * 9 8 6 13 13 H 1.07999 * 120.00019 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99908 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99546 * 180.02562 * 14 12 9 16 16 Si 1.86797 * 120.00061 * 359.97438 * 14 12 9 17 17 H 1.48496 * 109.47023 * 90.00536 * 16 14 12 18 18 H 1.48503 * 109.47041 * 210.00292 * 16 14 12 19 19 H 1.48500 * 109.47388 * 329.99951 * 16 14 12 20 20 C 1.39270 * 120.55477 * 0.25593 * 5 4 3 21 21 C 1.38584 * 120.32235 * 180.02562 * 2 1 3 22 22 C 1.50702 * 120.75828 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.47333 * 90.00224 * 1 2 3 24 24 H 1.09003 * 109.47552 * 209.99761 * 1 2 3 25 25 H 1.08997 * 109.47290 * 330.00290 * 1 2 3 26 26 H 1.07995 * 119.55236 * 0.02562 * 3 2 1 27 27 H 0.97003 * 120.00044 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47002 * 299.99701 * 11 9 8 29 29 H 1.08993 * 109.46955 * 60.00138 * 11 9 8 30 30 H 1.09000 * 109.47050 * 179.97438 * 11 9 8 31 31 H 0.97005 * 119.99945 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.47136 * 179.72044 * 20 5 4 33 33 H 1.09004 * 109.47103 * 89.99217 * 22 21 2 34 34 H 1.08991 * 109.47285 * 209.99620 * 22 21 2 35 35 H 1.08997 * 109.47264 * 330.00161 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2095 -0.0005 5 6 4.2294 0.0865 -0.0005 6 6 5.7097 0.1510 -0.0017 7 8 6.3625 -0.8738 -0.0021 8 7 6.3321 1.3465 -0.0032 9 6 7.7956 1.4103 -0.0049 10 1 8.1960 0.5855 0.5845 11 6 8.3090 1.3061 -1.4425 12 6 8.2421 2.7191 0.5941 13 1 7.5090 3.4318 0.9418 14 6 9.5866 3.0065 0.6984 15 7 9.9761 4.1485 1.2217 16 14 10.8546 1.7734 0.0977 17 1 11.1630 2.0366 -1.3308 18 1 12.0945 1.9057 0.9043 19 1 10.3145 0.3977 0.2423 20 6 3.5923 -1.1519 -0.0053 21 6 2.2067 -1.1963 -0.0005 22 6 1.4779 -2.5153 -0.0005 23 1 -0.3634 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6647 2.1305 0.0004 27 1 5.8109 2.1647 -0.0032 28 1 7.9861 0.3594 -1.8759 29 1 7.9087 2.1309 -2.0320 30 1 9.3979 1.3540 -1.4439 31 1 10.9220 4.3509 1.2947 32 1 4.1694 -2.0647 -0.0099 33 1 1.3017 -2.8331 -1.0283 34 1 2.0814 -3.2638 0.5128 35 1 0.5234 -2.4031 0.5136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156858.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:06 Heat of formation + Delta-G solvation = -32.579027 kcal Electronic energy + Delta-G solvation = -17504.131878 eV Core-core repulsion = 14693.894704 eV Total energy + Delta-G solvation = -2810.237174 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.73187 -40.17112 -36.93872 -35.65198 -34.38173 -33.40447 -31.79797 -29.34878 -28.04294 -27.25584 -24.54804 -23.75585 -22.45189 -21.16429 -19.42382 -18.16431 -18.01962 -17.10469 -16.41342 -16.26007 -16.10084 -15.51511 -15.34823 -14.90812 -14.71928 -14.16383 -13.93934 -13.85468 -13.66782 -13.58935 -13.48648 -13.20071 -12.81228 -12.68456 -12.43715 -12.16929 -11.66891 -11.33816 -11.23652 -10.89123 -10.49578 -10.47607 -10.09330 -9.80326 -8.39644 -6.46790 -0.37102 0.22231 1.27038 1.34768 1.45217 1.72581 2.24812 2.26279 2.82981 2.96002 3.20201 3.73568 3.76170 3.89218 3.92750 4.26645 4.39675 4.50313 4.57234 4.64081 4.65977 4.72410 4.78338 4.91654 4.92035 5.02959 5.14616 5.23124 5.28376 5.36445 5.39174 5.55089 5.72130 6.08762 6.52690 6.63614 6.89882 7.13178 7.29110 8.75947 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.044612 B = 0.004909 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.483392 B = 5702.189511 C = 6132.031949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C 0.091 3.909 4 N -0.483 5.483 5 C 0.051 3.949 6 C 0.555 3.445 7 O -0.583 6.583 8 N -0.682 5.682 9 C 0.238 3.762 10 H 0.028 0.972 11 C -0.154 4.154 12 C -0.538 4.538 13 H 0.052 0.948 14 C 0.030 3.970 15 N -0.933 5.933 16 Si 0.942 3.058 17 H -0.256 1.256 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.119 4.119 21 C -0.056 4.056 22 C -0.115 4.115 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.190 0.810 27 H 0.410 0.590 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.272 0.728 32 H 0.141 0.859 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.589 -10.859 -4.434 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.069 4.069 4 N -0.195 5.195 5 C -0.085 4.085 6 C 0.341 3.659 7 O -0.465 6.465 8 N -0.329 5.329 9 C 0.134 3.866 10 H 0.045 0.955 11 C -0.212 4.212 12 C -0.576 4.576 13 H 0.070 0.930 14 C -0.170 4.170 15 N -0.571 5.571 16 Si 0.769 3.231 17 H -0.182 1.182 18 H -0.215 1.215 19 H -0.186 1.186 20 C -0.140 4.140 21 C -0.063 4.063 22 C -0.171 4.171 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.206 0.794 27 H 0.246 0.754 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.448 -10.647 -4.381 23.467 hybrid contribution 0.686 -0.331 -0.003 0.761 sum -19.763 -10.978 -4.385 23.028 Atomic orbital electron populations 1.20938 0.86634 1.04984 1.04203 1.21468 0.99865 0.92541 0.97361 1.23310 0.88330 0.99719 0.95582 1.67491 1.10420 1.30294 1.11268 1.20895 0.92781 0.91038 1.03787 1.18481 0.87233 0.83703 0.76528 1.90675 1.67180 1.35119 1.53492 1.45970 1.08096 1.08209 1.70616 1.18905 0.77589 0.96337 0.93783 0.95463 1.22335 0.99862 1.00767 0.98225 1.21204 0.93220 1.01817 1.41346 0.93021 1.25587 1.00143 0.96813 0.94447 1.69983 1.17114 1.24450 1.45585 0.85949 0.78179 0.80192 0.78787 1.18176 1.21537 1.18607 1.22088 0.95714 0.97924 0.98263 1.20599 0.91977 0.97994 0.95758 1.20971 1.00895 0.90929 1.04274 0.88961 0.89188 0.89498 0.79366 0.75388 0.93429 0.91802 0.93468 0.91887 0.84131 0.88932 0.90735 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.65 71.24 0.69 -0.21 16 2 C -0.11 -1.94 5.91 -19.70 -0.12 -2.06 16 3 C 0.09 2.05 10.86 84.83 0.92 2.97 16 4 N -0.48 -15.46 9.54 -184.92 -1.76 -17.23 16 5 C 0.05 1.81 6.75 41.90 0.28 2.09 16 6 C 0.55 24.30 7.78 86.88 0.68 24.97 16 7 O -0.58 -28.37 15.99 -3.74 -0.06 -28.43 16 8 N -0.68 -31.35 5.06 -448.67 -2.27 -33.62 16 9 C 0.24 12.26 2.15 44.25 0.10 12.35 16 10 H 0.03 1.53 6.64 -2.39 -0.02 1.51 16 11 C -0.15 -7.13 8.96 71.98 0.65 -6.49 16 12 C -0.54 -31.20 9.31 25.60 0.24 -30.96 16 13 H 0.05 3.23 7.98 -2.91 -0.02 3.20 16 14 C 0.03 1.75 5.45 84.65 0.46 2.21 16 15 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 16 Si 0.94 45.82 24.37 68.60 1.67 47.49 16 17 H -0.26 -11.61 6.87 99.48 0.68 -10.93 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 20 C -0.12 -3.41 9.34 22.61 0.21 -3.20 16 21 C -0.06 -1.12 5.91 -19.69 -0.12 -1.23 16 22 C -0.11 -1.33 9.67 71.24 0.69 -0.64 16 23 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.09 0.47 6.06 -2.39 -0.01 0.46 16 25 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 26 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 27 H 0.41 17.98 7.87 -92.71 -0.73 17.25 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.05 2.18 3.27 -2.39 -0.01 2.17 16 31 H 0.27 15.60 8.31 -92.70 -0.77 14.82 16 32 H 0.14 4.06 7.64 -2.91 -0.02 4.04 16 33 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 35 H 0.10 0.68 6.07 -2.39 -0.01 0.66 16 Total: -1.00 -73.32 291.82 2.85 -70.47 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.30 Total: 18.70 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 4.67 Total: -0.19 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -3.73 Total: -108.03 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.06 Total: -28.43 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -73.32 2.85 -70.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156858.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.887 kcal (2) G-P(sol) polarization free energy of solvation -73.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds