Wall clock time and date at job start Mon Mar 30 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38609 * 120.32153 * 2 1 4 4 N 1.31494 * 120.89912 * 179.74287 * 3 2 1 5 5 C 1.32749 * 121.64268 * 0.57098 * 4 3 2 6 6 C 1.48169 * 119.72246 * 179.70638 * 5 4 3 7 7 O 1.21513 * 119.99903 * 179.72909 * 6 5 4 8 8 N 1.34777 * 119.99782 * 359.72616 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 C 1.39264 * 120.55264 * 359.43411 * 5 4 3 20 20 C 1.38576 * 120.32736 * 180.02562 * 2 1 3 21 21 C 1.50705 * 120.75686 * 359.95116 * 20 2 1 22 22 H 1.09004 * 109.46894 * 269.97645 * 1 2 3 23 23 H 1.09004 * 109.47125 * 29.97634 * 1 2 3 24 24 H 1.08997 * 109.47018 * 149.97693 * 1 2 3 25 25 H 1.08005 * 119.54931 * 0.04645 * 3 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 30 30 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 31 31 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 32 32 H 1.08007 * 120.46933 * 180.29611 * 19 5 4 33 33 H 1.08997 * 109.47061 * 270.02612 * 21 20 2 34 34 H 1.09002 * 109.46796 * 30.02433 * 21 20 2 35 35 H 1.08995 * 109.47130 * 150.02180 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0051 5 6 4.2295 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3626 -0.8735 -0.0019 8 7 6.3320 1.3468 -0.0014 9 6 7.7956 1.4107 0.0042 10 6 8.2423 2.8741 0.0100 11 6 9.7478 2.9398 0.0151 12 1 10.3281 2.0289 0.0148 13 6 10.3844 4.1628 0.0203 14 7 9.6779 5.2720 0.0213 15 14 12.2507 4.2442 0.0274 16 1 12.7504 4.2690 -1.3707 17 1 12.6897 5.4756 0.7320 18 1 12.7954 3.0529 0.7267 19 6 3.5924 -1.1517 -0.0010 20 6 2.2067 -1.1961 -0.0005 21 6 1.4781 -2.5153 0.0000 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6647 2.1306 0.0008 26 1 5.8109 2.1650 -0.0007 27 1 8.1778 0.9107 0.8943 28 1 8.1844 0.9158 -0.8857 29 1 7.8601 3.3740 -0.8800 30 1 7.8536 3.3691 0.9000 31 1 10.1258 6.1324 0.0245 32 1 4.1696 -2.0645 -0.0011 33 1 1.3027 -2.8331 1.0277 34 1 0.5232 -2.4030 -0.5135 35 1 2.0812 -3.2637 -0.5139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935338956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:11 Heat of formation + Delta-G solvation = -24.149778 kcal Electronic energy + Delta-G solvation = -16915.586238 eV Core-core repulsion = 14105.714584 eV Total energy + Delta-G solvation = -2809.871655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70738 -38.74314 -34.94867 -34.70910 -32.76688 -32.55185 -29.77414 -28.59323 -27.33924 -24.84969 -22.92525 -22.75254 -20.89662 -19.94020 -17.55038 -16.96130 -16.30704 -15.31057 -15.25885 -15.04483 -14.67065 -14.56371 -14.36912 -13.40496 -13.30819 -13.19444 -13.16011 -12.86467 -12.53476 -12.26663 -12.21277 -11.73860 -11.16983 -11.00828 -10.61749 -10.29378 -10.09698 -9.70224 -9.63584 -9.39587 -9.17312 -9.07987 -8.49424 -8.30273 -6.05163 -4.08147 0.61293 1.08338 2.92348 3.32234 3.37925 3.41744 3.55919 3.90546 4.20539 4.42402 4.44801 4.62491 4.64245 4.71477 5.12929 5.19905 5.21223 5.30972 5.31591 5.38524 5.49211 5.67469 5.70192 5.87169 6.09491 6.36655 6.37634 6.51021 6.76727 6.93583 7.55505 7.67092 7.68261 7.93111 8.09852 8.31281 8.62966 8.97802 9.56310 11.06437 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.051784 B = 0.003691 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.575731 B = 7583.701342 C = 8093.210353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.127 4.127 3 C 0.102 3.898 4 N -0.457 5.457 5 C 0.084 3.916 6 C 0.559 3.441 7 O -0.546 6.546 8 N -0.698 5.698 9 C 0.119 3.881 10 C 0.012 3.988 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.112 4.112 20 C -0.055 4.055 21 C -0.117 4.117 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.161 0.839 26 H 0.409 0.591 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.463 -10.917 -0.015 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.129 4.129 3 C -0.058 4.058 4 N -0.168 5.168 5 C -0.054 4.054 6 C 0.343 3.657 7 O -0.424 6.424 8 N -0.347 5.347 9 C -0.003 4.003 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.174 4.174 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.178 0.822 26 H 0.244 0.756 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.435 -10.643 -0.006 22.158 hybrid contribution 0.333 -0.115 0.007 0.352 sum -19.102 -10.758 0.001 21.923 Atomic orbital electron populations 1.20803 0.90071 1.03347 1.02774 1.20993 0.97647 0.93698 1.00569 1.22708 0.89395 0.97569 0.96168 1.67597 1.08560 1.30399 1.10263 1.21347 0.94781 0.89438 0.99844 1.17904 0.85475 0.84543 0.77812 1.90746 1.65889 1.34320 1.51481 1.46226 1.09482 1.07882 1.71104 1.21820 0.75909 1.01617 1.00951 1.19333 0.96794 0.88362 0.98054 1.21052 0.91004 0.92602 1.51353 0.92220 1.25001 0.98620 0.95657 0.95032 1.69962 1.35450 0.97463 1.50351 0.86510 0.85295 0.77563 0.78165 1.20577 1.21185 1.19733 1.22013 0.94048 0.99247 0.97977 1.20178 0.93280 0.95773 0.97019 1.20869 1.00354 0.93104 1.03031 0.90628 0.90956 0.90915 0.82171 0.75593 0.92297 0.92287 0.95800 0.95796 0.92856 0.83516 0.90373 0.90637 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.65 36.01 0.35 -0.31 16 2 C -0.13 -1.21 5.91 -104.36 -0.62 -1.83 16 3 C 0.10 1.15 10.86 -17.56 -0.19 0.96 16 4 N -0.46 -6.77 9.54 -9.80 -0.09 -6.86 16 5 C 0.08 1.33 6.75 -83.01 -0.56 0.77 16 6 C 0.56 10.74 7.81 -12.18 -0.10 10.64 16 7 O -0.55 -11.78 16.32 5.35 0.09 -11.69 16 8 N -0.70 -13.80 5.55 -61.14 -0.34 -14.13 16 9 C 0.12 2.67 5.61 -4.04 -0.02 2.65 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 15 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 C -0.11 -1.49 9.34 -39.05 -0.36 -1.86 16 20 C -0.05 -0.56 5.91 -104.35 -0.62 -1.18 16 21 C -0.12 -0.80 9.67 36.01 0.35 -0.45 16 22 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 24 H 0.07 0.35 6.06 -51.93 -0.31 0.03 16 25 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 26 H 0.41 7.60 7.80 -40.82 -0.32 7.28 16 27 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.15 1.89 7.64 -52.48 -0.40 1.49 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.39 6.07 -51.93 -0.32 0.07 16 35 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -32.67 303.46 -7.07 -39.75 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.69 Total: 1.53 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -2.32 Total: -3.96 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.30 Total: -46.87 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.67 -7.07 -39.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.595 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds