Wall clock time and date at job start Mon Mar 30 2020 18:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38609 * 120.32153 * 2 1 4 4 N 1.31494 * 120.89912 * 179.74287 * 3 2 1 5 5 C 1.32749 * 121.64268 * 0.57098 * 4 3 2 6 6 C 1.48169 * 119.72246 * 179.70638 * 5 4 3 7 7 O 1.21513 * 119.99903 * 179.72909 * 6 5 4 8 8 N 1.34777 * 119.99782 * 359.72616 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72355 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99720 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00513 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99651 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47115 * 89.99974 * 15 13 11 17 17 H 1.48509 * 109.46780 * 210.00159 * 15 13 11 18 18 H 1.48497 * 109.46888 * 329.99916 * 15 13 11 19 19 C 1.39264 * 120.55264 * 359.43411 * 5 4 3 20 20 C 1.38576 * 120.32736 * 180.02562 * 2 1 3 21 21 C 1.50705 * 120.75686 * 359.95116 * 20 2 1 22 22 H 1.09004 * 109.46894 * 269.97645 * 1 2 3 23 23 H 1.09004 * 109.47125 * 29.97634 * 1 2 3 24 24 H 1.08997 * 109.47018 * 149.97693 * 1 2 3 25 25 H 1.08005 * 119.54931 * 0.04645 * 3 2 1 26 26 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 27 27 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 28 28 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 29 29 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 30 30 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 31 31 H 0.96999 * 120.00239 * 180.02562 * 14 13 11 32 32 H 1.08007 * 120.46933 * 180.29611 * 19 5 4 33 33 H 1.08997 * 109.47061 * 270.02612 * 21 20 2 34 34 H 1.09002 * 109.46796 * 30.02433 * 21 20 2 35 35 H 1.08995 * 109.47130 * 150.02180 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0051 5 6 4.2295 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0014 7 8 6.3626 -0.8735 -0.0019 8 7 6.3320 1.3468 -0.0014 9 6 7.7956 1.4107 0.0042 10 6 8.2423 2.8741 0.0100 11 6 9.7478 2.9398 0.0151 12 1 10.3281 2.0289 0.0148 13 6 10.3844 4.1628 0.0203 14 7 9.6779 5.2720 0.0213 15 14 12.2507 4.2442 0.0274 16 1 12.7504 4.2690 -1.3707 17 1 12.6897 5.4756 0.7320 18 1 12.7954 3.0529 0.7267 19 6 3.5924 -1.1517 -0.0010 20 6 2.2067 -1.1961 -0.0005 21 6 1.4781 -2.5153 0.0000 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6647 2.1306 0.0008 26 1 5.8109 2.1650 -0.0007 27 1 8.1778 0.9107 0.8943 28 1 8.1844 0.9158 -0.8857 29 1 7.8601 3.3740 -0.8800 30 1 7.8536 3.3691 0.9000 31 1 10.1258 6.1324 0.0245 32 1 4.1696 -2.0645 -0.0011 33 1 1.3027 -2.8331 1.0277 34 1 0.5232 -2.4030 -0.5135 35 1 2.0812 -3.2637 -0.5139 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:11 Heat of formation + Delta-G solvation = -46.300586 kcal Electronic energy + Delta-G solvation = -16916.546769 eV Core-core repulsion = 14105.714584 eV Total energy + Delta-G solvation = -2810.832186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76541 -40.16867 -36.70290 -35.66785 -34.78607 -33.42524 -31.65204 -29.42359 -28.25226 -26.67768 -24.07491 -23.78180 -22.75214 -21.28199 -18.90346 -18.45398 -17.92565 -16.69095 -16.56816 -16.49710 -16.15170 -15.71392 -15.61142 -14.83912 -14.70827 -14.31373 -13.92526 -13.71694 -13.66642 -13.48138 -13.25171 -12.94843 -12.70199 -12.54410 -12.45500 -12.28466 -11.75319 -11.54968 -11.25897 -10.62289 -10.52518 -10.51535 -10.19938 -9.86328 -8.24720 -6.36324 -0.41194 0.19726 1.41216 1.42603 1.54096 1.64200 2.10060 2.42408 2.79166 3.09547 3.13711 3.69678 3.74278 3.87227 3.90377 4.23826 4.41146 4.43272 4.56112 4.64561 4.71412 4.77221 4.79215 4.90751 5.00902 5.14000 5.20103 5.22419 5.37577 5.44030 5.53214 5.69765 5.75723 6.12807 6.40785 6.75844 6.80510 7.09739 7.33048 8.87510 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.051784 B = 0.003691 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.575731 B = 7583.701342 C = 8093.210353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C 0.092 3.908 4 N -0.483 5.483 5 C 0.049 3.951 6 C 0.558 3.442 7 O -0.578 6.578 8 N -0.700 5.700 9 C 0.138 3.862 10 C 0.023 3.977 11 C -0.548 4.548 12 H 0.062 0.938 13 C 0.005 3.995 14 N -0.927 5.927 15 Si 0.970 3.030 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.117 4.117 20 C -0.055 4.055 21 C -0.115 4.115 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.190 0.810 26 H 0.413 0.587 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.266 0.734 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.455 -11.656 -0.021 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.111 4.111 3 C -0.069 4.069 4 N -0.195 5.195 5 C -0.087 4.087 6 C 0.345 3.655 7 O -0.458 6.458 8 N -0.349 5.349 9 C 0.015 3.985 10 C -0.014 4.014 11 C -0.586 4.586 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.139 4.139 20 C -0.063 4.063 21 C -0.171 4.171 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.207 0.793 26 H 0.250 0.750 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.447 -11.391 -0.014 24.284 hybrid contribution 0.759 0.111 0.012 0.767 sum -20.688 -11.280 -0.002 23.563 Atomic orbital electron populations 1.20948 0.86683 1.05037 1.04195 1.21475 0.99867 0.92570 0.97177 1.23310 0.88326 0.99727 0.95531 1.67484 1.10445 1.30249 1.11315 1.20840 0.92675 0.91045 1.04111 1.18447 0.87267 0.83491 0.76321 1.90703 1.67197 1.35068 1.52835 1.46072 1.08259 1.08724 1.71852 1.21367 0.77795 0.99079 1.00299 1.19133 0.96006 0.90047 0.96256 1.21455 0.92298 0.93068 1.51791 0.92002 1.25934 1.03987 0.95133 0.94279 1.70076 1.37654 0.98108 1.50851 0.85379 0.78784 0.77898 0.78576 1.19654 1.20433 1.18914 1.22102 0.95695 0.97982 0.98091 1.20604 0.92046 0.97966 0.95705 1.20979 1.00943 0.90961 1.04262 0.89023 0.89446 0.89147 0.79340 0.75036 0.92944 0.92905 0.97516 0.97516 0.92478 0.83977 0.89004 0.88202 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.65 71.24 0.69 -0.10 16 2 C -0.11 -1.75 5.91 -19.69 -0.12 -1.87 16 3 C 0.09 1.90 10.86 84.83 0.92 2.82 16 4 N -0.48 -14.34 9.54 -184.90 -1.76 -16.10 16 5 C 0.05 1.61 6.75 41.89 0.28 1.89 16 6 C 0.56 22.45 7.81 86.88 0.68 23.13 16 7 O -0.58 -26.04 16.32 -3.76 -0.06 -26.10 16 8 N -0.70 -29.03 5.55 -465.65 -2.58 -31.61 16 9 C 0.14 6.46 5.61 86.38 0.48 6.94 16 10 C 0.02 1.24 5.09 29.85 0.15 1.39 16 11 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 12 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 13 C 0.01 0.31 5.46 84.65 0.46 0.77 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 15 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.12 -3.12 9.34 22.61 0.21 -2.91 16 20 C -0.06 -1.02 5.91 -19.69 -0.12 -1.14 16 21 C -0.12 -1.18 9.67 71.24 0.69 -0.49 16 22 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.09 0.42 8.09 -2.38 -0.02 0.40 16 24 H 0.09 0.38 6.06 -2.39 -0.01 0.36 16 25 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 26 H 0.41 16.21 7.80 -92.71 -0.72 15.49 16 27 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.14 3.77 7.64 -2.91 -0.02 3.75 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.56 6.07 -2.39 -0.01 0.54 16 35 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 Total: -1.00 -72.46 303.46 2.85 -69.61 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.37 Total: 14.37 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 4.57 Total: -1.05 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -4.06 Total: -103.46 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.06 Total: -26.10 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.46 2.85 -69.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.312 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds