Wall clock time and date at job start Mon Mar 30 2020 18:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99834 * 2 1 4 4 H 1.48503 * 109.46986 * 269.99790 * 3 2 1 5 5 H 1.48505 * 109.47268 * 30.00001 * 3 2 1 6 6 H 1.48503 * 109.47072 * 150.00037 * 3 2 1 7 7 C 1.38812 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00147 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00469 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.63476 * 323.31352 * 10 9 7 12 12 C 1.55153 * 110.72161 * 199.98173 * 10 9 7 13 13 C 1.55127 * 101.48525 * 205.96849 * 12 10 9 14 14 N 1.47425 * 104.72341 * 37.29250 * 13 12 10 15 15 C 1.34777 * 125.65062 * 155.81573 * 14 13 12 16 16 O 1.21610 * 120.00255 * 179.69136 * 15 14 13 17 17 C 1.43205 * 119.99792 * 359.69383 * 15 14 13 18 18 C 9.24712 * 142.47360 * 206.50350 * 2 1 3 19 19 C 9.44984 * 164.78935 * 278.29849 * 7 1 2 20 20 C 1.52995 * 117.50089 * 344.59097 * 19 18 17 21 21 C 1.53000 * 117.49881 * 275.93152 * 19 18 17 22 22 C 1.47026 * 108.70288 * 335.55493 * 14 13 12 23 23 H 0.96998 * 120.00003 * 359.97438 * 1 2 3 24 24 H 0.97007 * 119.99718 * 0.02562 * 9 7 2 25 25 H 1.09001 * 111.00552 * 324.20748 * 12 10 9 26 26 H 1.08995 * 111.00998 * 88.02004 * 12 10 9 27 27 H 1.09004 * 110.49817 * 278.45108 * 13 12 10 28 28 H 1.09006 * 110.34547 * 156.05419 * 13 12 10 29 29 H 1.08998 * 115.54605 * 130.25862 * 19 18 17 30 30 H 1.09007 * 117.50112 * 359.97438 * 20 19 18 31 31 H 1.08997 * 117.50394 * 145.01946 * 20 19 18 32 32 H 1.09000 * 117.49640 * 214.98307 * 21 19 18 33 33 H 1.08999 * 117.49942 * 359.97438 * 21 19 18 34 34 H 1.08996 * 109.88166 * 120.70291 * 22 14 13 35 35 H 1.09001 * 109.88242 * 241.86832 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5961 -3.2124 0.6098 12 6 5.5680 -2.2642 0.4953 13 6 6.3001 -3.4438 -0.1969 14 7 5.6613 -3.5562 -1.5207 15 6 6.2231 -4.0953 -2.6208 16 8 5.5980 -4.1403 -3.6630 17 6 7.5562 -4.6151 -2.5624 18 6 8.6499 -5.0407 -2.5136 19 6 10.0202 -5.5761 -2.4509 20 6 10.1872 -7.0460 -2.0605 21 6 10.5730 -5.9427 -1.0722 22 6 4.3074 -2.9886 -1.4406 23 1 -0.4850 0.8400 0.0004 24 1 3.8647 -0.3621 -0.0004 25 1 5.9622 -1.3048 0.1603 26 1 5.6278 -2.3514 1.5801 27 1 6.1621 -4.3643 0.3704 28 1 7.3614 -3.2197 -0.3056 29 1 10.7187 -5.1667 -3.1807 30 1 9.2828 -7.6167 -1.8497 31 1 10.9958 -7.6035 -2.5331 32 1 11.6354 -5.7747 -0.8950 33 1 9.9226 -5.7871 -0.2115 34 1 4.2084 -2.1647 -2.1472 35 1 3.5687 -3.7593 -1.6608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968627118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:13 Heat of formation + Delta-G solvation = 64.998438 kcal Electronic energy + Delta-G solvation = -17018.737552 eV Core-core repulsion = 14212.731655 eV Total energy + Delta-G solvation = -2806.005898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81946 -37.93973 -37.40189 -34.32249 -32.86514 -31.59953 -29.95563 -28.10177 -25.32380 -23.64030 -22.85575 -22.53562 -21.19154 -19.97557 -18.24495 -17.46998 -16.79137 -16.32802 -15.82611 -15.18730 -14.68806 -14.15030 -13.88158 -13.16287 -13.01558 -12.83228 -12.66403 -12.40399 -12.21685 -11.99053 -11.91958 -11.55029 -11.33088 -10.95130 -10.81381 -10.58003 -10.38330 -10.22974 -10.11568 -9.89892 -9.66189 -9.05766 -8.49441 -7.42098 -5.84433 -3.22995 1.50307 2.05687 2.96797 3.32857 3.36405 3.37086 3.41913 3.67978 3.87291 4.36039 4.52410 4.53230 4.60451 4.74955 4.99352 5.05532 5.17523 5.25742 5.37615 5.43237 5.54638 5.57797 5.63536 5.64975 5.78214 5.82171 6.13090 6.19634 6.35632 6.52901 6.71616 7.09995 7.56475 7.89262 8.17034 8.34010 9.10104 9.82107 9.99557 11.33176 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.004104 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.543921 B = 6821.568141 C = 7043.503472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.077 0.923 12 C -0.143 4.143 13 C 0.103 3.897 14 N -0.602 5.602 15 C 0.638 3.362 16 O -0.526 6.526 17 C -0.198 4.198 18 C -0.071 4.071 19 C -0.061 4.061 20 C -0.161 4.161 21 C -0.161 4.161 22 C 0.084 3.916 23 H 0.261 0.739 24 H 0.365 0.635 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.162 -10.789 0.749 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.066 3.934 11 H 0.094 0.906 12 C -0.182 4.182 13 C -0.021 4.021 14 N -0.335 5.335 15 C 0.426 3.574 16 O -0.404 6.404 17 C -0.201 4.201 18 C -0.073 4.073 19 C -0.079 4.079 20 C -0.198 4.198 21 C -0.197 4.197 22 C -0.041 4.041 23 H 0.071 0.929 24 H 0.198 0.802 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 21.526 -10.862 0.161 24.112 hybrid contribution 0.542 1.264 -0.149 1.383 sum 22.069 -9.598 0.011 24.065 Atomic orbital electron populations 1.69701 1.05146 1.26051 1.56602 1.24689 0.95240 0.97312 1.01422 0.86563 0.79202 0.84902 0.77920 1.20921 1.21581 1.20241 1.19082 0.80254 0.94964 1.44148 0.88898 1.42720 1.04226 1.01495 1.89371 1.21188 0.90401 0.89987 0.91849 0.90560 1.23131 0.96670 0.97674 1.00691 1.22378 0.97334 0.99134 0.83223 1.48396 1.17342 1.58426 1.09383 1.14309 0.81900 0.78131 0.83021 1.90866 1.62835 1.57310 1.29381 1.20739 0.93830 1.03157 1.02381 1.21285 0.92237 0.94957 0.98830 1.18866 0.88842 0.98951 1.01233 1.23113 1.03992 0.90041 1.02625 1.23122 1.02214 1.02084 0.92328 1.23265 0.80389 0.98430 1.02001 0.92868 0.80196 0.90586 0.89555 0.91039 0.90980 0.84816 0.88087 0.87433 0.87439 0.88017 0.90499 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 21.63 27.73 -169.99 -4.71 16.91 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 7 C -0.25 -6.97 10.46 -15.06 -0.16 -7.13 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 9 N -0.74 -16.65 4.98 -51.66 -0.26 -16.91 16 10 C 0.18 3.20 3.59 -66.10 -0.24 2.96 16 11 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 12 C -0.14 -1.96 6.71 -24.47 -0.16 -2.13 16 13 C 0.10 1.28 6.68 -2.41 -0.02 1.26 16 14 N -0.60 -9.79 3.32 -173.24 -0.58 -10.37 16 15 C 0.64 11.28 7.69 -14.33 -0.11 11.17 16 16 O -0.53 -11.27 17.41 5.27 0.09 -11.18 16 17 C -0.20 -2.92 12.49 -38.83 -0.49 -3.41 16 18 C -0.07 -0.84 13.48 -37.09 -0.50 -1.34 16 19 C -0.06 -0.48 6.22 -93.39 -0.58 -1.06 16 20 C -0.16 -0.97 10.21 -26.70 -0.27 -1.25 16 21 C -0.16 -0.93 10.21 -26.70 -0.27 -1.20 16 22 C 0.08 1.55 6.62 -3.06 -0.02 1.53 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.36 8.09 5.58 -40.82 -0.23 7.86 16 25 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 29 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.59 8.03 -51.93 -0.42 1.18 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -33.32 306.93 -7.82 -41.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.85 Total: 4.13 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.91 Total: -0.39 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.06 Total: -55.24 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.32 -7.82 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968627118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.138 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds