Wall clock time and date at job start Mon Mar 30 2020 18:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99834 * 2 1 4 4 H 1.48503 * 109.46986 * 269.99790 * 3 2 1 5 5 H 1.48505 * 109.47268 * 30.00001 * 3 2 1 6 6 H 1.48503 * 109.47072 * 150.00037 * 3 2 1 7 7 C 1.38812 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00147 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00469 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.63476 * 323.31352 * 10 9 7 12 12 C 1.55153 * 110.72161 * 199.98173 * 10 9 7 13 13 C 1.55127 * 101.48525 * 205.96849 * 12 10 9 14 14 N 1.47425 * 104.72341 * 37.29250 * 13 12 10 15 15 C 1.34777 * 125.65062 * 155.81573 * 14 13 12 16 16 O 1.21610 * 120.00255 * 179.69136 * 15 14 13 17 17 C 1.43205 * 119.99792 * 359.69383 * 15 14 13 18 18 C 9.24712 * 142.47360 * 206.50350 * 2 1 3 19 19 C 9.44984 * 164.78935 * 278.29849 * 7 1 2 20 20 C 1.52995 * 117.50089 * 344.59097 * 19 18 17 21 21 C 1.53000 * 117.49881 * 275.93152 * 19 18 17 22 22 C 1.47026 * 108.70288 * 335.55493 * 14 13 12 23 23 H 0.96998 * 120.00003 * 359.97438 * 1 2 3 24 24 H 0.97007 * 119.99718 * 0.02562 * 9 7 2 25 25 H 1.09001 * 111.00552 * 324.20748 * 12 10 9 26 26 H 1.08995 * 111.00998 * 88.02004 * 12 10 9 27 27 H 1.09004 * 110.49817 * 278.45108 * 13 12 10 28 28 H 1.09006 * 110.34547 * 156.05419 * 13 12 10 29 29 H 1.08998 * 115.54605 * 130.25862 * 19 18 17 30 30 H 1.09007 * 117.50112 * 359.97438 * 20 19 18 31 31 H 1.08997 * 117.50394 * 145.01946 * 20 19 18 32 32 H 1.09000 * 117.49640 * 214.98307 * 21 19 18 33 33 H 1.08999 * 117.49942 * 359.97438 * 21 19 18 34 34 H 1.08996 * 109.88166 * 120.70291 * 22 14 13 35 35 H 1.09001 * 109.88242 * 241.86832 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5961 -3.2124 0.6098 12 6 5.5680 -2.2642 0.4953 13 6 6.3001 -3.4438 -0.1969 14 7 5.6613 -3.5562 -1.5207 15 6 6.2231 -4.0953 -2.6208 16 8 5.5980 -4.1403 -3.6630 17 6 7.5562 -4.6151 -2.5624 18 6 8.6499 -5.0407 -2.5136 19 6 10.0202 -5.5761 -2.4509 20 6 10.1872 -7.0460 -2.0605 21 6 10.5730 -5.9427 -1.0722 22 6 4.3074 -2.9886 -1.4406 23 1 -0.4850 0.8400 0.0004 24 1 3.8647 -0.3621 -0.0004 25 1 5.9622 -1.3048 0.1603 26 1 5.6278 -2.3514 1.5801 27 1 6.1621 -4.3643 0.3704 28 1 7.3614 -3.2197 -0.3056 29 1 10.7187 -5.1667 -3.1807 30 1 9.2828 -7.6167 -1.8497 31 1 10.9958 -7.6035 -2.5331 32 1 11.6354 -5.7747 -0.8950 33 1 9.9226 -5.7871 -0.2115 34 1 4.2084 -2.1647 -2.1472 35 1 3.5687 -3.7593 -1.6608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968627118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:12 Heat of formation + Delta-G solvation = 42.689405 kcal Electronic energy + Delta-G solvation = -17019.704945 eV Core-core repulsion = 14212.731655 eV Total energy + Delta-G solvation = -2806.973290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17727 -38.89186 -38.46440 -36.10470 -34.04406 -33.38693 -31.43357 -29.57353 -26.65069 -25.01688 -23.91805 -23.26444 -22.35351 -21.44604 -19.90711 -19.00262 -17.81991 -17.51621 -17.05643 -16.51349 -15.82136 -15.74003 -15.47244 -14.82430 -14.47464 -14.04296 -13.93203 -13.58117 -13.39725 -13.10667 -13.00308 -12.60187 -12.42472 -12.38761 -12.30221 -12.18442 -11.85995 -11.63714 -11.59371 -11.10875 -11.06906 -10.70573 -9.85909 -9.43918 -8.05071 -5.41611 0.36809 1.06152 1.37221 1.41948 1.48410 1.78651 2.30046 2.46842 2.87185 3.06822 3.24534 3.44792 3.67001 3.73412 3.85160 4.05045 4.08238 4.24689 4.26612 4.40781 4.45031 4.58174 4.80206 4.80936 4.91011 4.98393 5.09501 5.10641 5.12853 5.25035 5.27992 5.74101 6.10193 6.18333 6.28016 6.82288 7.03311 7.76311 7.95387 9.15914 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.004104 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.543921 B = 6821.568141 C = 7043.503472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.954 3.046 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.239 4.239 8 H 0.060 0.940 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.077 0.923 12 C -0.128 4.128 13 C 0.105 3.895 14 N -0.601 5.601 15 C 0.637 3.363 16 O -0.582 6.582 17 C -0.261 4.261 18 C -0.017 4.017 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.144 4.144 22 C 0.091 3.909 23 H 0.259 0.741 24 H 0.370 0.630 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.678 -11.173 2.162 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.781 3.219 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.370 4.370 8 H 0.078 0.922 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.095 0.905 12 C -0.166 4.166 13 C -0.017 4.017 14 N -0.332 5.332 15 C 0.427 3.573 16 O -0.464 6.464 17 C -0.264 4.264 18 C -0.020 4.020 19 C -0.107 4.107 20 C -0.191 4.191 21 C -0.181 4.181 22 C -0.035 4.035 23 H 0.068 0.932 24 H 0.204 0.796 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.174 0.826 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 26.123 -11.281 1.617 28.501 hybrid contribution -0.774 1.198 -0.601 1.547 sum 25.350 -10.083 1.016 27.300 Atomic orbital electron populations 1.69887 1.07259 1.26839 1.59142 1.25539 0.96105 1.01433 1.02206 0.85426 0.79094 0.79508 0.77858 1.21184 1.22110 1.16609 1.19044 0.82433 0.93623 1.41888 0.92245 1.42667 1.02577 1.03462 1.89385 1.21386 0.93013 0.88166 0.91395 0.90514 1.23098 0.92647 0.98351 1.02519 1.22640 0.98247 0.99766 0.81008 1.48415 1.16435 1.57601 1.10773 1.14652 0.82853 0.77399 0.82368 1.90816 1.64537 1.59667 1.31372 1.20184 0.93858 1.06310 1.06002 1.22139 0.92403 0.91863 0.95569 1.19326 0.86810 1.00648 1.03885 1.23252 1.04374 0.89083 1.02403 1.23279 1.03532 1.00415 0.90850 1.22909 0.81810 0.97084 1.01657 0.93241 0.79605 0.90304 0.86550 0.88664 0.88423 0.82582 0.89071 0.85049 0.84864 0.88252 0.93334 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.90 13.97 21.65 0.30 -62.60 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.95 44.79 27.73 68.60 1.90 46.69 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 7 C -0.24 -13.38 10.46 84.03 0.88 -12.50 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 N -0.74 -33.04 4.98 -317.34 -1.58 -34.62 16 10 C 0.17 6.04 3.59 46.18 0.17 6.21 16 11 H 0.08 2.73 8.12 -2.39 -0.02 2.71 16 12 C -0.13 -3.11 6.71 32.06 0.22 -2.89 16 13 C 0.10 2.32 6.68 86.93 0.58 2.90 16 14 N -0.60 -19.42 3.32 -820.27 -2.73 -22.15 16 15 C 0.64 23.03 7.69 85.49 0.66 23.69 16 16 O -0.58 -26.34 17.41 -4.06 -0.07 -26.42 16 17 C -0.26 -7.50 12.49 30.01 0.37 -7.12 16 18 C -0.02 -0.37 13.48 31.13 0.42 0.05 16 19 C -0.09 -1.05 6.22 -12.59 -0.08 -1.13 16 20 C -0.15 -1.26 10.21 30.62 0.31 -0.95 16 21 C -0.14 -1.00 10.21 30.62 0.31 -0.69 16 22 C 0.09 3.47 6.62 86.73 0.57 4.05 16 23 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 24 H 0.37 15.70 5.58 -92.70 -0.52 15.19 16 25 H 0.08 1.93 8.00 -2.39 -0.02 1.91 16 26 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.10 1.74 7.68 -2.38 -0.02 1.72 16 29 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 2.11 8.03 -2.39 -0.02 2.09 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.23 306.93 3.23 -74.00 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.52 Total: 16.59 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.88 Total: 8.50 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -4.01 Total: -119.37 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal Total: -77.23 3.23 -74.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968627118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.694 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds