Wall clock time and date at job start Mon Mar 30 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.63933 * 36.68934 * 10 9 7 12 12 C 1.55163 * 110.71659 * 160.02483 * 10 9 7 13 13 C 1.54911 * 101.57645 * 153.86642 * 12 10 9 14 14 N 1.47422 * 104.83472 * 322.98989 * 13 12 10 15 15 C 1.34780 * 125.64813 * 204.09318 * 14 13 12 16 16 O 1.21615 * 119.99765 * 180.02562 * 15 14 13 17 17 C 1.43195 * 119.99775 * 0.04476 * 15 14 13 18 18 C 9.24716 * 94.33451 * 195.81705 * 2 1 3 19 19 C 9.44979 * 118.40592 * 197.17020 * 7 1 2 20 20 C 1.52997 * 117.49799 * 264.51775 * 19 18 17 21 21 C 1.52998 * 60.00227 * 252.50976 * 20 19 18 22 22 C 1.47019 * 108.70354 * 24.13107 * 14 13 12 23 23 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 25 25 H 1.08997 * 111.00159 * 271.94078 * 12 10 9 26 26 H 1.08996 * 111.00066 * 35.79063 * 12 10 9 27 27 H 1.09002 * 110.36070 * 204.15196 * 13 12 10 28 28 H 1.09003 * 110.46130 * 81.87775 * 13 12 10 29 29 H 1.09003 * 115.54857 * 50.23252 * 19 18 17 30 30 H 1.08995 * 117.49937 * 0.02562 * 20 19 18 31 31 H 1.09000 * 117.49446 * 145.02645 * 20 19 18 32 32 H 1.08996 * 117.50175 * 252.51006 * 21 20 19 33 33 H 1.09003 * 117.49310 * 107.48843 * 21 20 19 34 34 H 1.09004 * 109.88546 * 239.52353 * 22 14 13 35 35 H 1.09003 * 110.01411 * 118.43160 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9586 -3.5805 0.6100 12 6 1.1513 -4.8141 0.4963 13 6 1.8014 -6.0373 -0.1972 14 7 2.2231 -5.5413 -1.5199 15 6 2.4087 -6.2976 -2.6199 16 8 2.7597 -5.7789 -3.6624 17 6 2.1924 -7.7119 -2.5611 18 6 2.0151 -8.8716 -2.5133 19 6 1.7927 -10.3263 -2.4492 20 6 1.8231 -10.9854 -1.0688 21 6 2.9788 -11.2052 -2.0471 22 6 2.4085 -4.0850 -1.4401 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0039 25 1 1.1979 -4.9096 1.5811 26 1 0.1233 -4.6758 0.1616 27 1 1.0739 -6.8415 -0.3079 28 1 2.6648 -6.3833 0.3711 29 1 1.0949 -10.7280 -3.1839 30 1 2.0072 -10.3426 -0.2081 31 1 1.1451 -11.8210 -0.8951 32 1 3.0611 -12.1853 -2.5169 33 1 3.9236 -10.7069 -1.8299 34 1 1.7442 -3.5874 -2.1467 35 1 3.4444 -3.8281 -1.6616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018823870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:14 Heat of formation + Delta-G solvation = 60.356103 kcal Electronic energy + Delta-G solvation = -16966.802045 eV Core-core repulsion = 14160.594841 eV Total energy + Delta-G solvation = -2806.207205 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73578 -37.90214 -37.28793 -34.18132 -32.82823 -31.45663 -29.64641 -27.79616 -25.21818 -23.74519 -22.82035 -22.70546 -21.07545 -19.88193 -18.05170 -17.18043 -16.75305 -16.18352 -15.75879 -15.14287 -14.64698 -14.15649 -13.50544 -13.30639 -12.97763 -12.83646 -12.61872 -12.32713 -11.98154 -11.91426 -11.64515 -11.51091 -11.18330 -10.86732 -10.77174 -10.38938 -10.33756 -10.17199 -10.03218 -9.85451 -9.77497 -9.02942 -8.41524 -7.10847 -5.85102 -3.16199 1.55598 2.11022 3.03829 3.40682 3.41520 3.47007 3.48897 3.73040 3.92685 4.39518 4.53097 4.57100 4.65578 4.89680 5.07810 5.20577 5.23798 5.31572 5.46290 5.50551 5.61869 5.66773 5.70704 5.73364 5.90231 6.07071 6.26606 6.33183 6.45591 6.62864 6.84783 7.14971 7.63885 7.65442 8.23135 8.32387 9.44459 9.97115 10.31953 11.36952 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.048447 B = 0.003854 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.813787 B = 7263.215566 C = 7557.010394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.068 0.932 12 C -0.139 4.139 13 C 0.102 3.898 14 N -0.600 5.600 15 C 0.637 3.363 16 O -0.528 6.528 17 C -0.197 4.197 18 C -0.072 4.072 19 C -0.061 4.061 20 C -0.161 4.161 21 C -0.161 4.161 22 C 0.082 3.918 23 H 0.256 0.744 24 H 0.387 0.613 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -21.607 0.808 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.086 0.914 12 C -0.178 4.178 13 C -0.021 4.021 14 N -0.333 5.333 15 C 0.425 3.575 16 O -0.407 6.407 17 C -0.200 4.200 18 C -0.075 4.075 19 C -0.078 4.078 20 C -0.197 4.197 21 C -0.198 4.198 22 C -0.042 4.042 23 H 0.066 0.934 24 H 0.222 0.778 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.211 -21.145 0.227 21.389 hybrid contribution 0.073 0.923 -0.176 0.943 sum 3.284 -20.222 0.052 20.487 Atomic orbital electron populations 1.69670 1.05192 1.25850 1.56962 1.24784 0.95538 0.97903 1.02300 0.86093 0.78878 0.83830 0.77222 1.20395 1.21731 1.21771 1.19310 0.91191 0.83881 1.43632 0.90800 1.42393 1.05845 0.99411 1.87585 1.21229 0.94938 0.86401 0.91468 0.91401 1.23059 1.00325 0.94027 1.00409 1.22342 0.98860 0.97654 0.83245 1.48402 1.65838 1.09656 1.09413 1.14327 0.78453 0.81627 0.83054 1.90857 1.47472 1.72964 1.29376 1.20745 1.04285 0.92641 1.02290 1.21271 0.95230 0.92059 0.98919 1.18869 1.03985 0.83863 1.01115 1.23110 1.01611 1.02609 0.92411 1.23099 0.93530 1.00487 1.02706 1.23367 1.01674 0.76649 1.02557 0.93365 0.77815 0.89784 0.90353 0.91084 0.91290 0.84819 0.88012 0.87440 0.87460 0.88125 0.90483 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -6.73 9.98 -15.06 -0.15 -6.88 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.21 5.17 -51.64 -0.27 -17.48 16 10 C 0.17 3.26 3.59 -66.09 -0.24 3.02 16 11 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.14 -2.08 6.70 -24.58 -0.16 -2.24 16 13 C 0.10 1.37 6.67 -2.53 -0.02 1.35 16 14 N -0.60 -10.21 3.33 -173.39 -0.58 -10.79 16 15 C 0.64 11.66 7.69 -14.33 -0.11 11.55 16 16 O -0.53 -11.60 17.41 5.26 0.09 -11.51 16 17 C -0.20 -3.01 12.49 -38.84 -0.49 -3.50 16 18 C -0.07 -0.90 13.48 -37.08 -0.50 -1.40 16 19 C -0.06 -0.50 6.22 -93.36 -0.58 -1.08 16 20 C -0.16 -0.99 10.21 -26.73 -0.27 -1.26 16 21 C -0.16 -1.03 10.21 -26.73 -0.27 -1.30 16 22 C 0.08 1.58 6.62 -3.07 -0.02 1.56 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.39 9.93 7.71 -40.82 -0.31 9.62 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 27 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -32.36 310.03 -8.18 -40.54 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.90 Total: 4.82 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.91 Total: -0.51 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.12 Total: -55.10 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.36 -8.18 -40.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018823870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.896 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds