Wall clock time and date at job start Mon Mar 30 2020 18:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47239 * 299.99990 * 3 2 1 6 6 H 1.48501 * 109.46793 * 59.99571 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.63933 * 36.68934 * 10 9 7 12 12 C 1.55163 * 110.71659 * 160.02483 * 10 9 7 13 13 C 1.54911 * 101.57645 * 153.86642 * 12 10 9 14 14 N 1.47422 * 104.83472 * 322.98989 * 13 12 10 15 15 C 1.34780 * 125.64813 * 204.09318 * 14 13 12 16 16 O 1.21615 * 119.99765 * 180.02562 * 15 14 13 17 17 C 1.43195 * 119.99775 * 0.04476 * 15 14 13 18 18 C 9.24716 * 94.33451 * 195.81705 * 2 1 3 19 19 C 9.44979 * 118.40592 * 197.17020 * 7 1 2 20 20 C 1.52997 * 117.49799 * 264.51775 * 19 18 17 21 21 C 1.52998 * 60.00227 * 252.50976 * 20 19 18 22 22 C 1.47019 * 108.70354 * 24.13107 * 14 13 12 23 23 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 25 25 H 1.08997 * 111.00159 * 271.94078 * 12 10 9 26 26 H 1.08996 * 111.00066 * 35.79063 * 12 10 9 27 27 H 1.09002 * 110.36070 * 204.15196 * 13 12 10 28 28 H 1.09003 * 110.46130 * 81.87775 * 13 12 10 29 29 H 1.09003 * 115.54857 * 50.23252 * 19 18 17 30 30 H 1.08995 * 117.49937 * 0.02562 * 20 19 18 31 31 H 1.09000 * 117.49446 * 145.02645 * 20 19 18 32 32 H 1.08996 * 117.50175 * 252.51006 * 21 20 19 33 33 H 1.09003 * 117.49310 * 107.48843 * 21 20 19 34 34 H 1.09004 * 109.88546 * 239.52353 * 22 14 13 35 35 H 1.09003 * 110.01411 * 118.43160 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9586 -3.5805 0.6100 12 6 1.1513 -4.8141 0.4963 13 6 1.8014 -6.0373 -0.1972 14 7 2.2231 -5.5413 -1.5199 15 6 2.4087 -6.2976 -2.6199 16 8 2.7597 -5.7789 -3.6624 17 6 2.1924 -7.7119 -2.5611 18 6 2.0151 -8.8716 -2.5133 19 6 1.7927 -10.3263 -2.4492 20 6 1.8231 -10.9854 -1.0688 21 6 2.9788 -11.2052 -2.0471 22 6 2.4085 -4.0850 -1.4401 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0039 25 1 1.1979 -4.9096 1.5811 26 1 0.1233 -4.6758 0.1616 27 1 1.0739 -6.8415 -0.3079 28 1 2.6648 -6.3833 0.3711 29 1 1.0949 -10.7280 -3.1839 30 1 2.0072 -10.3426 -0.2081 31 1 1.1451 -11.8210 -0.8951 32 1 3.0611 -12.1853 -2.5169 33 1 3.9236 -10.7069 -1.8299 34 1 1.7442 -3.5874 -2.1467 35 1 3.4444 -3.8281 -1.6616 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018823870.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:14 Heat of formation + Delta-G solvation = 39.516948 kcal Electronic energy + Delta-G solvation = -16967.705699 eV Core-core repulsion = 14160.594841 eV Total energy + Delta-G solvation = -2807.110858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.15294 -38.82900 -38.46241 -35.99896 -34.01964 -33.16306 -31.17835 -29.36533 -26.64407 -25.24268 -23.99633 -23.25924 -22.26022 -21.39390 -19.52263 -18.92710 -17.79009 -17.46499 -17.04916 -16.51576 -15.79624 -15.67989 -15.33833 -14.98146 -14.39219 -14.01133 -13.61811 -13.47213 -13.26903 -13.07431 -12.92481 -12.61803 -12.47256 -12.38418 -12.31907 -12.09885 -11.78237 -11.65641 -11.58180 -11.10844 -11.03981 -10.70382 -9.84071 -9.12812 -7.98607 -5.29127 0.37300 1.06931 1.47213 1.48678 1.58116 1.80606 2.30265 2.53953 2.88518 3.07208 3.32978 3.59374 3.75677 3.84772 3.87322 4.05785 4.10826 4.28485 4.30356 4.45602 4.48202 4.60650 4.80410 4.82531 4.94346 4.98684 5.10743 5.13022 5.15461 5.25292 5.32513 5.51257 6.10493 6.23003 6.29407 6.83059 7.30240 8.00983 8.24622 9.24475 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.048447 B = 0.003854 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.813787 B = 7263.215566 C = 7557.010394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.080 0.920 9 N -0.725 5.725 10 C 0.167 3.833 11 H 0.078 0.922 12 C -0.127 4.127 13 C 0.107 3.893 14 N -0.600 5.600 15 C 0.636 3.364 16 O -0.582 6.582 17 C -0.261 4.261 18 C -0.018 4.018 19 C -0.090 4.090 20 C -0.145 4.145 21 C -0.153 4.153 22 C 0.092 3.908 23 H 0.252 0.748 24 H 0.377 0.623 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 -24.643 2.108 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.056 3.944 11 H 0.096 0.904 12 C -0.165 4.165 13 C -0.015 4.015 14 N -0.331 5.331 15 C 0.427 3.573 16 O -0.465 6.465 17 C -0.264 4.264 18 C -0.020 4.020 19 C -0.107 4.107 20 C -0.182 4.182 21 C -0.189 4.189 22 C -0.034 4.034 23 H 0.061 0.939 24 H 0.209 0.791 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.174 0.826 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.805 -24.237 1.565 24.584 hybrid contribution -0.083 1.669 -0.583 1.769 sum 3.722 -22.568 0.982 22.894 Atomic orbital electron populations 1.69812 1.06605 1.26151 1.59089 1.25568 0.96365 1.01141 1.03307 0.85103 0.78366 0.79862 0.76597 1.18947 1.22459 1.21696 1.19690 0.91627 0.85035 1.41500 0.90259 1.42546 1.05547 1.00576 1.87682 1.21440 0.95916 0.85791 0.91211 0.90367 1.23001 0.98868 0.92510 1.02141 1.22565 1.00424 0.97314 0.81167 1.48426 1.65376 1.08546 1.10765 1.14664 0.77348 0.82973 0.82362 1.90806 1.50056 1.74354 1.31256 1.20189 1.07980 0.92228 1.05992 1.22146 0.91600 0.92706 0.95576 1.19338 1.06366 0.81251 1.03789 1.23268 1.01500 1.02490 0.90894 1.23243 0.92669 1.00743 1.02284 1.22985 1.00182 0.78380 1.01840 0.93908 0.79055 0.86985 0.91323 0.88823 0.88445 0.82600 0.88302 0.84866 0.84987 0.89005 0.94114 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.25 -13.46 9.98 84.03 0.84 -12.63 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.72 -35.55 5.17 -317.31 -1.64 -37.19 16 10 C 0.17 6.29 3.59 46.18 0.17 6.45 16 11 H 0.08 2.81 8.12 -2.39 -0.02 2.79 16 12 C -0.13 -3.56 6.70 31.99 0.21 -3.34 16 13 C 0.11 2.61 6.67 86.86 0.58 3.19 16 14 N -0.60 -20.48 3.33 -820.73 -2.73 -23.21 16 15 C 0.64 23.91 7.69 85.49 0.66 24.57 16 16 O -0.58 -26.99 17.41 -4.08 -0.07 -27.06 16 17 C -0.26 -7.86 12.49 30.01 0.37 -7.49 16 18 C -0.02 -0.40 13.48 31.15 0.42 0.02 16 19 C -0.09 -1.15 6.22 -12.57 -0.08 -1.22 16 20 C -0.14 -1.14 10.21 30.59 0.31 -0.83 16 21 C -0.15 -1.34 10.21 30.59 0.31 -1.03 16 22 C 0.09 3.65 6.62 86.73 0.57 4.22 16 23 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 24 H 0.38 19.84 7.71 -92.71 -0.72 19.12 16 25 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 2.09 8.00 -2.39 -0.02 2.07 16 27 H 0.09 1.93 7.69 -2.39 -0.02 1.92 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.04 1.90 8.03 -2.38 -0.02 1.88 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.39 310.03 3.09 -70.30 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.38 Total: 19.15 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 4.84 Total: 8.33 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -4.09 Total: -118.78 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.07 Total: -27.06 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.39 3.09 -70.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018823870.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.821 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds