Wall clock time and date at job start Mon Mar 30 2020 18:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86798 * 119.99916 * 2 1 4 4 H 1.48496 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47186 * 300.00610 * 3 2 1 6 6 H 1.48500 * 109.46849 * 60.00312 * 3 2 1 7 7 C 1.40022 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.41314 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.40595 * 119.78391 * 180.02562 * 9 7 2 11 11 C 1.38345 * 119.14953 * 179.97438 * 10 9 7 12 12 C 1.38641 * 118.67553 * 359.74964 * 11 10 9 13 13 C 1.39750 * 119.49634 * 0.47578 * 12 11 10 14 14 N 1.38828 * 119.58535 * 179.79252 * 13 12 11 15 15 C 1.46497 * 120.00230 * 359.72317 * 14 13 12 16 16 C 1.52990 * 109.47171 * 179.97438 * 15 14 13 17 17 H 1.09000 * 112.90908 * 43.75361 * 16 15 14 18 18 C 1.53786 * 113.61464 * 174.99989 * 16 15 14 19 19 C 1.53781 * 87.17350 * 140.02626 * 18 16 15 20 20 H 1.08999 * 113.61567 * 89.07405 * 19 18 16 21 21 O 1.42897 * 113.61404 * 219.97824 * 19 18 16 22 22 C 1.53781 * 87.08070 * 334.52830 * 19 18 16 23 23 N 1.31984 * 120.82939 * 359.51299 * 13 12 11 24 24 H 0.96999 * 120.00060 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.42179 * 0.02562 * 10 9 7 26 26 H 1.07994 * 120.66385 * 180.02562 * 11 10 9 27 27 H 1.08008 * 120.25129 * 180.27087 * 12 11 10 28 28 H 0.97003 * 119.99593 * 179.72208 * 14 13 12 29 29 H 1.09007 * 109.46596 * 60.00218 * 15 14 13 30 30 H 1.08994 * 109.47005 * 300.00528 * 15 14 13 31 31 H 1.09002 * 113.61357 * 25.43543 * 18 16 15 32 32 H 1.09002 * 113.61608 * 254.61705 * 18 16 15 33 33 H 0.96698 * 113.99781 * 179.97438 * 21 19 18 34 34 H 1.09005 * 113.61471 * 139.98321 * 22 19 18 35 35 H 1.08996 * 113.61178 * 270.79663 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8827 2.3963 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4364 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3037 -4.8417 0.0000 12 6 -0.0819 -4.7944 0.0058 13 6 -0.7281 -3.5552 0.0009 14 7 -2.1155 -3.5057 0.0024 15 6 -2.8928 -4.7474 0.0029 16 6 -4.3860 -4.4142 0.0052 17 1 -4.6432 -3.6137 -0.6884 18 6 -5.2931 -5.6501 -0.1169 19 6 -6.2160 -4.9802 0.9149 20 1 -6.9725 -4.3341 0.4696 21 8 -6.7567 -5.8900 1.8750 22 6 -4.9754 -4.2218 1.4154 23 7 -0.0359 -2.4315 0.0004 24 1 -0.4850 0.8400 0.0004 25 1 3.0886 -3.6552 -0.0001 26 1 1.8223 -5.7890 0.0004 27 1 -0.6576 -5.7082 0.0108 28 1 -2.5701 -2.6488 0.0030 29 1 -2.6491 -5.3281 0.8926 30 1 -2.6510 -5.3278 -0.8873 31 1 -4.8300 -6.5689 0.2430 32 1 -5.7477 -5.7626 -1.1012 33 1 -7.3377 -5.4745 2.5268 34 1 -5.1729 -3.1799 1.6678 35 1 -4.4263 -4.7494 2.1953 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118811123.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:18 Heat of formation + Delta-G solvation = 4.797211 kcal Electronic energy + Delta-G solvation = -17345.712495 eV Core-core repulsion = 14537.096076 eV Total energy + Delta-G solvation = -2808.616419 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51440 -38.10663 -35.71350 -34.24352 -33.05913 -30.38556 -29.25462 -26.53195 -25.77665 -25.26885 -22.42495 -21.37189 -20.27398 -19.54320 -17.66824 -17.30349 -16.18176 -15.48871 -15.03747 -14.66106 -14.43036 -14.27087 -13.87706 -13.20649 -12.96278 -12.73083 -12.48721 -11.99639 -11.90138 -11.43412 -11.40952 -11.21587 -10.94635 -10.81060 -10.58793 -10.40737 -10.28640 -9.90030 -9.82096 -9.45059 -8.83558 -7.87171 -7.47373 -6.46159 -6.29838 -4.44326 2.89009 3.12883 3.17522 3.27546 3.32638 3.97753 4.00684 4.25117 4.54345 4.59063 4.79420 4.85552 4.88567 5.32707 5.48356 5.68416 5.71822 5.83653 5.92315 6.06770 6.08603 6.19510 6.22655 6.41902 6.62600 6.90079 6.93203 6.99093 7.28334 7.49575 7.63876 7.85597 7.96062 8.20943 8.41115 8.73505 8.84038 9.16332 10.28179 10.43879 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.004856 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.861739 B = 5764.425410 C = 6546.513645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.317 4.317 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.410 3.590 14 N -0.738 5.738 15 C 0.155 3.845 16 C -0.119 4.119 17 H 0.097 0.903 18 C -0.119 4.119 19 C 0.073 3.927 20 H 0.080 0.920 21 O -0.562 6.562 22 C -0.161 4.161 23 N -0.532 5.532 24 H 0.268 0.732 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.395 0.605 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.376 0.624 34 H 0.069 0.931 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 -4.851 1.074 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.340 4.340 11 C -0.057 4.057 12 C -0.393 4.393 13 C 0.171 3.829 14 N -0.375 5.375 15 C 0.029 3.971 16 C -0.138 4.138 17 H 0.115 0.885 18 C -0.157 4.157 19 C 0.014 3.986 20 H 0.098 0.902 21 O -0.367 6.367 22 C -0.199 4.199 23 N -0.254 5.254 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.229 0.771 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.225 -4.555 0.724 12.135 hybrid contribution 0.331 0.640 0.301 0.781 sum -10.894 -3.915 1.025 11.621 Atomic orbital electron populations 1.70169 1.07149 1.27126 1.29463 1.26045 0.94839 1.00886 0.93543 0.86333 0.80942 0.81467 0.78393 1.18443 1.19975 1.19976 1.19613 0.94168 0.89394 1.43594 0.89880 1.18213 0.86939 0.91848 0.86486 1.21534 0.98393 0.93489 1.20566 1.20595 0.93447 0.96363 0.95259 1.20617 0.94619 0.95523 1.28577 1.18539 0.84373 0.90258 0.89767 1.44122 1.02670 1.06757 1.83907 1.20977 0.87949 0.87646 1.00482 1.22575 0.94726 0.98647 0.97829 0.88489 1.23035 0.95981 0.98384 0.98287 1.23389 0.93156 0.91552 0.90480 0.90227 1.86525 1.67784 1.37785 1.44637 1.23781 0.97515 1.01047 0.97551 1.68219 1.07671 1.24341 1.25133 0.92078 0.88740 0.88970 0.89236 0.77092 0.92981 0.93005 0.88967 0.90804 0.77753 0.91236 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.29 11.46 55.55 0.64 -18.65 16 2 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 3 Si 0.90 18.92 29.56 -169.99 -5.02 13.89 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.44 -12.00 9.14 -37.74 -0.34 -12.35 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 10 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.37 -8.73 9.34 -38.87 -0.36 -9.10 16 13 C 0.41 10.27 7.65 -155.31 -1.19 9.08 16 14 N -0.74 -15.01 5.72 -60.40 -0.35 -15.36 16 15 C 0.16 2.47 4.72 -4.05 -0.02 2.45 16 16 C -0.12 -1.47 3.76 -89.67 -0.34 -1.81 16 17 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.12 -1.29 7.46 -25.92 -0.19 -1.48 16 19 C 0.07 0.74 5.21 -25.92 -0.14 0.61 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 21 O -0.56 -5.92 13.67 -35.23 -0.48 -6.40 16 22 C -0.16 -1.88 7.47 -25.78 -0.19 -2.07 16 23 N -0.53 -14.99 7.89 -10.33 -0.08 -15.07 16 24 H 0.27 6.51 8.29 -40.82 -0.34 6.18 16 25 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 26 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 28 H 0.39 7.97 8.59 -40.82 -0.35 7.62 16 29 H 0.05 0.85 7.62 -51.93 -0.40 0.46 16 30 H 0.05 0.83 7.93 -51.93 -0.41 0.42 16 31 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.38 2.31 9.12 45.56 0.42 2.72 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -31.41 297.18 -9.03 -40.44 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.01 Total: 11.58 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -4.21 Total: -14.90 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.21 Total: -49.08 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.48 Total: -6.40 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.41 -9.03 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118811123.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.234 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds