Wall clock time and date at job start Mon Mar 30 2020 18:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38386 * 119.93120 * 2 1 4 4 C 1.38338 * 120.29355 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.14357 * 0.30372 * 4 3 2 6 6 C 1.39557 * 119.85101 * 359.44757 * 5 4 3 7 7 C 1.47847 * 120.13971 * 180.29942 * 6 5 4 8 8 O 1.21558 * 119.99627 * 180.22582 * 7 6 5 9 9 N 1.34770 * 120.00404 * 0.23034 * 7 6 5 10 10 C 1.46504 * 120.00394 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47140 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46607 * 179.97438 * 11 10 9 13 13 C 1.36945 * 119.99649 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00098 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99780 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00138 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46693 * 90.00227 * 17 15 13 19 19 H 1.48496 * 109.47053 * 210.00030 * 17 15 13 20 20 H 1.48498 * 109.47203 * 330.00345 * 17 15 13 21 21 C 1.37934 * 119.92680 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47620 * 89.99570 * 1 2 3 23 23 H 1.08996 * 109.47315 * 210.00405 * 1 2 3 24 24 H 1.09007 * 109.46604 * 329.99531 * 1 2 3 25 25 H 1.08001 * 119.85110 * 0.02755 * 3 2 1 26 26 H 1.08002 * 119.92371 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.06871 * 179.70410 * 5 4 3 28 28 H 0.97006 * 120.00067 * 359.97438 * 9 7 6 29 29 H 1.09008 * 109.46651 * 299.99648 * 10 9 7 30 30 H 1.08996 * 109.46977 * 59.99497 * 10 9 7 31 31 H 1.08994 * 109.47002 * 299.99333 * 11 10 9 32 32 H 1.08996 * 109.47549 * 59.99905 * 11 10 9 33 33 H 0.96996 * 120.00668 * 359.97438 * 12 11 10 34 34 H 0.96999 * 119.99696 * 179.97438 * 16 15 13 35 35 H 1.08004 * 120.07180 * 359.95115 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1993 0.0000 4 6 3.5808 1.2080 -0.0005 5 6 4.2812 0.0193 -0.0074 6 6 3.5910 -1.1937 -0.0021 7 6 4.3352 -2.4712 -0.0028 8 8 3.7313 -3.5262 -0.0023 9 7 5.6829 -2.4662 -0.0037 10 6 6.4202 -3.7321 -0.0049 11 6 7.9234 -3.4468 -0.0065 12 7 8.6606 -4.7128 -0.0070 13 6 10.0300 -4.7076 -0.0089 14 1 10.5665 -3.7703 -0.0105 15 6 10.7286 -5.9072 -0.0089 16 7 10.0748 -7.0495 -0.0066 17 14 12.5966 -5.9001 -0.0123 18 1 13.0940 -5.8968 1.3870 19 1 13.0949 -7.1114 -0.7119 20 1 13.0858 -4.6864 -0.7144 21 6 2.1951 -1.1954 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5140 25 1 1.6539 2.1325 0.0005 26 1 4.1136 2.1475 -0.0001 27 1 5.3612 0.0275 -0.0126 28 1 6.1647 -1.6243 -0.0044 29 1 6.1597 -4.3051 0.8851 30 1 6.1584 -4.3042 -0.8949 31 1 8.1835 -2.8741 -0.8966 32 1 8.1856 -2.8745 0.8833 33 1 8.1789 -5.5547 -0.0060 34 1 10.5631 -7.8877 -0.0069 35 1 1.6551 -2.1307 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122939116.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:20 Heat of formation + Delta-G solvation = -31.159885 kcal Electronic energy + Delta-G solvation = -16695.324463 eV Core-core repulsion = 13885.148827 eV Total energy + Delta-G solvation = -2810.175636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.29517 -39.50830 -37.35477 -35.63123 -33.95459 -33.04637 -32.09135 -29.53171 -27.73830 -25.95996 -24.47041 -23.10881 -22.74387 -21.20816 -19.40040 -18.59729 -17.41342 -16.85286 -16.73602 -16.58924 -15.80681 -15.65785 -15.34059 -15.15356 -14.88370 -14.60802 -14.51577 -13.93391 -13.18935 -13.07306 -13.04143 -12.85721 -12.67266 -12.60769 -12.49501 -12.09918 -11.99535 -11.87393 -11.13457 -11.00493 -10.32002 -9.90594 -9.67237 -9.08498 -7.97808 -5.29708 -0.15844 0.38626 1.48134 1.50831 1.59252 1.79449 1.98807 2.57081 2.85707 3.36476 3.60428 3.82027 3.96656 3.98250 4.11512 4.17628 4.19441 4.37760 4.40299 4.53275 4.70910 4.83657 4.89787 4.96896 4.99322 5.09506 5.25010 5.28889 5.35134 5.43160 5.47730 5.58050 5.96320 6.22759 6.43855 7.09400 7.28962 8.00079 8.23429 9.26013 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.058980 B = 0.003303 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.621884 B = 8473.914071 C = 8922.785767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.092 4.092 4 C -0.120 4.120 5 C -0.094 4.094 6 C -0.149 4.149 7 C 0.551 3.449 8 O -0.587 6.587 9 N -0.704 5.704 10 C 0.126 3.874 11 C 0.150 3.850 12 N -0.748 5.748 13 C -0.249 4.249 14 H 0.084 0.916 15 C -0.078 4.078 16 N -0.972 5.972 17 Si 0.981 3.019 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.084 4.084 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.158 0.842 26 H 0.162 0.838 27 H 0.146 0.854 28 H 0.416 0.584 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.374 0.626 34 H 0.253 0.747 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.640 21.882 -0.046 27.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.110 4.110 4 C -0.138 4.138 5 C -0.112 4.112 6 C -0.152 4.152 7 C 0.340 3.660 8 O -0.468 6.468 9 N -0.357 5.357 10 C 0.002 3.998 11 C 0.023 3.977 12 N -0.391 5.391 13 C -0.380 4.380 14 H 0.102 0.898 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.809 3.191 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.103 4.103 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.107 0.893 25 H 0.176 0.824 26 H 0.179 0.821 27 H 0.164 0.836 28 H 0.254 0.746 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.205 0.795 34 H 0.061 0.939 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.863 21.224 -0.053 27.108 hybrid contribution 1.076 -0.861 0.008 1.379 sum -15.787 20.363 -0.045 25.766 Atomic orbital electron populations 1.20861 0.89006 1.03860 1.03334 1.20210 0.97812 0.92336 0.99739 1.21690 0.94639 0.98299 0.96348 1.21510 0.94553 0.98571 0.99148 1.21596 1.01030 0.91287 0.97308 1.19848 0.94602 0.92316 1.08468 1.18849 0.82213 0.89524 0.75443 1.90746 1.69378 1.34546 1.52153 1.45633 1.05758 1.10041 1.74256 1.21209 0.91471 0.85853 1.01287 1.20842 0.88400 0.89052 0.99423 1.42434 1.03420 1.03448 1.89814 1.19665 0.83469 0.93093 1.41804 0.89778 1.25702 1.03017 0.94989 1.03281 1.69843 1.36109 0.97133 1.59110 0.85037 0.79472 0.77076 0.77517 1.21233 1.22302 1.18936 1.21224 0.92694 0.99011 0.97348 0.90171 0.91685 0.89326 0.82417 0.82075 0.83642 0.74583 0.92686 0.92687 0.94267 0.94276 0.79458 0.93870 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 71.23 0.71 -0.57 16 2 C -0.10 -1.68 5.87 -19.90 -0.12 -1.80 16 3 C -0.09 -1.15 9.69 22.33 0.22 -0.93 16 4 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 5 C -0.09 -1.62 9.54 22.53 0.21 -1.40 16 6 C -0.15 -3.69 5.87 -20.09 -0.12 -3.81 16 7 C 0.55 17.59 7.77 86.79 0.67 18.27 16 8 O -0.59 -23.95 16.35 -3.90 -0.06 -24.02 16 9 N -0.70 -20.23 5.51 -465.96 -2.57 -22.79 16 10 C 0.13 4.55 5.79 86.38 0.50 5.05 16 11 C 0.15 5.81 6.37 86.38 0.55 6.36 16 12 N -0.75 -38.58 5.60 -343.46 -1.92 -40.51 16 13 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 14 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 15 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 16 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 17 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 21 C -0.08 -1.96 9.24 22.52 0.21 -1.76 16 22 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 24 H 0.09 0.63 8.08 -2.38 -0.02 0.61 16 25 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 26 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 27 H 0.15 1.85 6.41 -2.91 -0.02 1.84 16 28 H 0.42 8.85 6.51 -92.70 -0.60 8.25 16 29 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 34 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.12 3.06 7.65 -2.91 -0.02 3.04 16 Total: -1.00 -73.73 304.45 1.92 -71.82 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.21 Total: 26.71 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.37 Total: 1.08 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -4.21 Total: -123.51 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.73 1.92 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122939116.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.657 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds