Wall clock time and date at job start Mon Mar 30 2020 18:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38228 * 119.61827 * 2 1 4 4 C 1.38628 * 119.15943 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.78943 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47137 * 269.97623 * 5 4 3 7 7 C 1.50703 * 109.47137 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99866 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00201 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99506 * 359.97438 * 9 7 6 11 11 C 1.37096 * 120.00140 * 179.97438 * 9 7 6 12 12 H 1.08006 * 119.99778 * 24.39408 * 11 9 7 13 13 C 1.38948 * 119.99923 * 204.39701 * 11 9 7 14 14 N 1.31408 * 120.00102 * 12.63713 * 13 11 9 15 15 Si 1.86801 * 119.99766 * 192.64290 * 13 11 9 16 16 H 1.48494 * 109.47295 * 89.99735 * 15 13 11 17 17 H 1.48507 * 109.46931 * 210.00037 * 15 13 11 18 18 H 1.48506 * 109.46921 * 329.99415 * 15 13 11 19 19 C 1.38673 * 118.42361 * 359.97438 * 4 3 2 20 20 C 1.38183 * 119.16153 * 0.02562 * 19 4 3 21 21 N 1.31858 * 119.61843 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.47700 * 269.98289 * 1 2 3 23 23 H 1.09012 * 109.46939 * 29.98536 * 1 2 3 24 24 H 1.09001 * 109.47309 * 149.98154 * 1 2 3 25 25 H 1.07993 * 120.42171 * 359.97438 * 3 2 1 26 26 H 1.09003 * 109.47288 * 29.97850 * 5 4 3 27 27 H 1.09002 * 109.47515 * 149.97486 * 5 4 3 28 28 H 1.08997 * 109.47024 * 299.99391 * 6 5 4 29 29 H 1.09002 * 109.47231 * 60.00081 * 6 5 4 30 30 H 1.08999 * 109.47196 * 85.86729 * 10 9 7 31 31 H 1.09002 * 109.46472 * 205.85925 * 10 9 7 32 32 H 1.09000 * 109.47643 * 325.86295 * 10 9 7 33 33 H 0.96995 * 119.99805 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.41932 * 180.02562 * 19 4 3 35 35 H 1.07998 * 119.61421 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 -0.0005 5 6 4.3581 2.4790 0.0000 6 6 4.6226 2.9156 -1.4423 7 6 5.4049 4.2037 -1.4417 8 8 5.7195 4.7217 -0.3910 9 7 5.7541 4.7806 -2.6087 10 6 5.3736 4.1552 -3.8776 11 6 6.4653 5.9527 -2.6081 12 1 7.0760 6.2133 -1.7563 13 6 6.4004 6.8052 -3.7035 14 7 5.4808 6.6230 -4.6243 15 14 7.6206 8.2101 -3.8670 16 1 8.8156 7.7434 -4.6150 17 1 6.9855 9.3345 -4.6004 18 1 8.0306 8.6695 -2.5156 19 6 4.2266 -0.0342 -0.0005 20 6 3.4765 -1.1948 -0.0005 21 7 2.1586 -1.1463 -0.0005 22 1 -0.3634 -0.0003 1.0276 23 1 -0.3633 0.8902 -0.5137 24 1 -0.3634 -0.8898 -0.5141 25 1 1.6508 2.1373 -0.0004 26 1 3.7857 3.2511 0.5143 27 1 5.3075 2.3278 0.5138 28 1 5.1950 2.1436 -1.9564 29 1 3.6732 3.0669 -1.9560 30 1 4.3698 4.4769 -4.1547 31 1 6.0779 4.4525 -4.6547 32 1 5.3903 3.0709 -3.7677 33 1 5.4358 7.2179 -5.3890 34 1 5.3056 -0.0805 -0.0005 35 1 3.9754 -2.1526 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142249260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:24 Heat of formation + Delta-G solvation = -9.363915 kcal Electronic energy + Delta-G solvation = -17330.771827 eV Core-core repulsion = 14521.541336 eV Total energy + Delta-G solvation = -2809.230491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.25806 -38.48002 -35.05478 -34.29190 -32.67657 -31.67792 -30.19741 -27.65157 -26.43199 -25.26801 -23.71120 -22.85588 -20.62047 -18.70034 -16.89719 -16.58859 -16.39188 -15.74973 -15.17902 -14.82905 -14.54895 -14.36274 -14.05520 -13.35753 -12.94488 -12.84424 -12.58497 -12.34876 -12.05982 -11.80335 -11.64509 -11.39345 -11.31750 -11.23227 -10.86936 -10.60459 -10.35630 -10.24713 -9.44223 -9.43142 -9.01674 -8.90791 -8.38579 -7.67019 -6.33168 -3.89713 1.14955 1.31772 3.15693 3.24429 3.29923 3.78836 3.89377 4.13479 4.30649 4.61809 4.76253 5.03742 5.10739 5.14845 5.18465 5.43838 5.48368 5.50195 5.53051 5.61423 5.76426 5.83028 5.97883 6.04528 6.16544 6.19421 6.39383 6.48529 6.59126 6.78013 6.84005 7.18020 7.55898 8.01157 8.13881 8.48009 9.18152 9.42126 9.98119 10.71907 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.044605 B = 0.004240 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.581300 B = 6601.725278 C = 6770.207745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.123 3.877 3 C -0.170 4.170 4 C -0.024 4.024 5 C -0.065 4.065 6 C -0.121 4.121 7 C 0.446 3.554 8 O -0.592 6.592 9 N -0.447 5.447 10 C 0.112 3.888 11 C -0.308 4.308 12 H 0.098 0.902 13 C 0.030 3.970 14 N -0.883 5.883 15 Si 0.926 3.074 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.178 4.178 20 C 0.101 3.899 21 N -0.496 5.496 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.134 0.866 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.134 0.866 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.016 -12.050 3.988 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.190 4.190 4 C -0.032 4.032 5 C -0.103 4.103 6 C -0.162 4.162 7 C 0.234 3.766 8 O -0.477 6.477 9 N -0.166 5.166 10 C -0.032 4.032 11 C -0.436 4.436 12 H 0.115 0.885 13 C -0.173 4.173 14 N -0.522 5.522 15 Si 0.753 3.247 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.198 4.198 20 C -0.056 4.056 21 N -0.206 5.206 22 H 0.094 0.906 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.152 0.848 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.387 -12.458 4.288 14.642 hybrid contribution 1.037 1.472 -0.452 1.856 sum -5.350 -10.986 3.836 12.808 Atomic orbital electron populations 1.20695 0.89052 1.03363 1.02885 1.21256 0.96885 0.88376 0.94878 1.21926 0.94424 0.99333 1.03314 1.20553 0.93869 0.95964 0.92794 1.20383 1.00147 0.92351 0.97427 1.21478 1.00983 0.97295 0.96411 1.20051 0.84378 0.87683 0.84488 1.90512 1.59325 1.66770 1.31086 1.43588 1.47656 1.21328 1.04015 1.21474 1.01675 0.92544 0.87521 1.19662 1.23097 0.96360 1.04438 0.88459 1.25346 0.97018 0.98427 0.96476 1.69991 1.31286 1.38947 1.12012 0.85931 0.79992 0.80172 0.78649 1.20375 1.20940 1.19348 1.22083 1.01580 0.92907 1.03251 1.22662 0.89430 0.98244 0.95277 1.67475 1.10066 1.29427 1.13681 0.90611 0.90682 0.90666 0.84799 0.89924 0.89959 0.90499 0.90274 0.93032 0.90755 0.95614 0.92261 0.84807 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.17 36.00 0.37 -0.60 16 2 C 0.12 1.57 6.78 -82.59 -0.56 1.01 16 3 C -0.17 -2.22 9.45 -39.44 -0.37 -2.60 16 4 C -0.02 -0.33 5.17 -104.32 -0.54 -0.87 16 5 C -0.07 -1.04 4.68 -27.88 -0.13 -1.17 16 6 C -0.12 -2.17 4.29 -27.88 -0.12 -2.29 16 7 C 0.45 10.73 7.63 -10.98 -0.08 10.65 16 8 O -0.59 -16.18 15.70 5.54 0.09 -16.09 16 9 N -0.45 -11.48 3.01 -122.19 -0.37 -11.85 16 10 C 0.11 2.49 8.44 59.85 0.51 3.00 16 11 C -0.31 -8.62 9.24 -14.93 -0.14 -8.76 16 12 H 0.10 2.85 7.45 -52.48 -0.39 2.46 16 13 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 14 N -0.88 -23.64 10.83 55.50 0.60 -23.03 16 15 Si 0.93 20.76 29.57 -169.99 -5.03 15.73 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.18 -2.23 9.82 -39.44 -0.39 -2.61 16 20 C 0.10 1.21 11.18 -17.55 -0.20 1.02 16 21 N -0.50 -6.72 10.27 -9.48 -0.10 -6.82 16 22 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.60 8.08 -51.92 -0.42 0.18 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 27 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 28 H 0.08 1.25 7.41 -51.93 -0.38 0.87 16 29 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 30 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 31 H 0.07 1.75 6.80 -51.93 -0.35 1.40 16 32 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 299.77 15.07 4.52 4.52 Total: -1.00 -31.80 299.77 -6.84 -38.63 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.80 Total: 1.41 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.74 Total: -2.50 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.14 Total: -41.70 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.80 -6.84 -38.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142249260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds