Wall clock time and date at job start Mon Mar 30 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48504 * 109.47016 * 269.99879 * 3 2 1 5 5 H 1.48496 * 109.47279 * 29.99509 * 3 2 1 6 6 H 1.48493 * 109.47242 * 149.99922 * 3 2 1 7 7 C 1.38807 * 120.00540 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00720 * 180.02562 * 7 2 1 9 9 N 1.36947 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.52990 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47108 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47135 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99852 * 179.97438 * 13 12 11 15 15 O 1.21557 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.39575 * 120.13807 * 180.02562 * 16 14 13 18 18 C 1.37966 * 119.85100 * 179.97438 * 17 16 14 19 19 C 1.38360 * 120.14194 * 359.97438 * 18 17 16 20 20 C 1.38356 * 120.29558 * 0.02562 * 19 18 17 21 21 C 1.37965 * 120.14370 * 359.97438 * 20 19 18 22 22 H 0.96992 * 120.00084 * 0.02562 * 1 2 3 23 23 H 0.96996 * 119.99435 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.47197 * 59.99936 * 10 9 7 25 25 H 1.09007 * 109.46798 * 300.00282 * 10 9 7 26 26 H 1.09002 * 109.47206 * 59.99869 * 11 10 9 27 27 H 1.08999 * 109.47620 * 300.00085 * 11 10 9 28 28 H 1.08996 * 109.46951 * 60.00477 * 12 11 10 29 29 H 1.08996 * 109.47668 * 300.00067 * 12 11 10 30 30 H 0.97002 * 119.99932 * 0.02562 * 13 12 11 31 31 H 1.07998 * 120.08057 * 359.70005 * 17 16 14 32 32 H 1.08000 * 119.93065 * 180.02562 * 18 17 16 33 33 H 1.08003 * 119.85327 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.93243 * 180.02562 * 20 19 18 35 35 H 1.08003 * 120.07139 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 6 1.0641 -4.8196 0.0031 12 6 1.8291 -6.1446 0.0037 13 7 0.8771 -7.2582 0.0047 14 6 1.3265 -8.5289 0.0048 15 8 2.5216 -8.7510 0.0045 16 6 0.3657 -9.6527 0.0052 17 6 0.8278 -10.9697 0.0058 18 6 -0.0740 -12.0138 0.0068 19 6 -1.4337 -11.7576 0.0076 20 6 -1.8983 -10.4543 0.0070 21 6 -1.0071 -9.4011 0.0060 22 1 -0.4850 0.8400 -0.0004 23 1 0.3557 -2.3880 0.0016 24 1 2.6849 -3.7137 0.8928 25 1 2.6849 -3.7152 -0.8872 26 1 0.4377 -4.7625 -0.8871 27 1 0.4370 -4.7614 0.8928 28 1 2.4556 -6.2020 0.8937 29 1 2.4558 -6.2028 -0.8862 30 1 -0.0766 -7.0810 0.0045 31 1 1.8888 -11.1711 0.0011 32 1 0.2821 -13.0334 0.0077 33 1 -2.1355 -12.5785 0.0079 34 1 -2.9608 -10.2610 0.0081 35 1 -1.3711 -8.3843 0.0051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154227449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:32 Heat of formation + Delta-G solvation = -31.317423 kcal Electronic energy + Delta-G solvation = -16532.228673 eV Core-core repulsion = 13722.046206 eV Total energy + Delta-G solvation = -2810.182467 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22398 -39.26539 -37.52849 -35.99079 -33.89986 -32.41713 -31.86933 -30.91420 -27.15321 -25.14275 -23.97593 -23.28833 -22.59677 -21.38381 -19.37472 -18.83812 -17.40211 -16.93276 -16.87396 -16.55157 -15.86074 -15.67425 -15.52425 -15.26009 -15.00306 -14.59383 -14.19083 -14.02563 -13.45943 -13.32467 -12.82422 -12.64962 -12.60276 -12.42652 -12.09323 -12.06941 -12.00991 -11.80596 -11.08719 -10.95508 -10.29247 -9.94564 -9.87049 -9.03012 -7.97437 -5.26780 -0.14134 0.42168 1.47576 1.49244 1.57876 1.82683 2.06737 2.55758 2.90915 3.36490 3.65318 3.72385 3.92733 4.03390 4.05659 4.23294 4.27917 4.42726 4.47763 4.55018 4.69914 4.70286 4.82971 4.88987 5.06829 5.23724 5.29367 5.31627 5.38410 5.46145 5.48129 5.51693 5.95866 6.25462 6.45548 7.10898 7.31898 8.06131 8.30279 9.26143 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.056589 B = 0.003049 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.673649 B = 9180.863878 C = 9649.789852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.747 5.747 10 C 0.152 3.848 11 C -0.118 4.118 12 C 0.132 3.868 13 N -0.712 5.712 14 C 0.551 3.449 15 O -0.585 6.585 16 C -0.157 4.157 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.129 4.129 21 C -0.089 4.089 22 H 0.253 0.747 23 H 0.376 0.624 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.414 0.586 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 -24.772 0.042 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.382 4.382 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.025 3.975 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.364 5.364 14 C 0.340 3.660 15 O -0.466 6.466 16 C -0.160 4.160 17 C -0.100 4.100 18 C -0.149 4.149 19 C -0.109 4.109 20 C -0.147 4.147 21 C -0.108 4.108 22 H 0.062 0.938 23 H 0.208 0.792 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.252 0.748 31 H 0.140 0.860 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.174 0.826 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.655 -24.787 0.051 25.221 hybrid contribution -0.101 1.303 -0.016 1.307 sum -4.756 -23.484 0.035 23.961 Atomic orbital electron populations 1.69800 1.06559 1.26240 1.59305 1.25588 0.96486 1.01163 1.03464 0.85119 0.77693 0.79302 0.77519 1.21270 1.21934 1.19529 1.19648 0.91566 0.85412 1.41582 0.90739 1.42542 1.05757 1.01144 1.89576 1.20671 0.94062 0.84713 0.98036 1.21705 0.98531 0.92025 1.03396 1.21146 0.91678 0.84273 1.02119 1.45853 1.11362 1.04933 1.74222 1.18777 0.88078 0.83653 0.75464 1.90739 1.18213 1.85489 1.52202 1.19933 0.94012 0.93349 1.08746 1.21395 1.00855 0.91618 0.96121 1.21464 0.93466 0.99650 1.00273 1.21825 0.95836 0.97942 0.95268 1.21530 1.01153 0.92284 0.99686 1.21605 0.91188 1.01238 0.96747 0.93847 0.79188 0.95967 0.95966 0.90602 0.90592 0.91791 0.91781 0.74809 0.86005 0.83098 0.82469 0.82559 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.75 -38.19 5.60 -343.46 -1.92 -40.12 16 10 C 0.15 6.05 6.26 86.38 0.54 6.59 16 11 C -0.12 -3.53 5.44 30.59 0.17 -3.37 16 12 C 0.13 3.63 5.67 86.38 0.49 4.12 16 13 N -0.71 -16.95 5.51 -465.96 -2.57 -19.51 16 14 C 0.55 15.24 7.77 86.79 0.67 15.92 16 15 O -0.58 -20.86 16.35 -3.89 -0.06 -20.93 16 16 C -0.16 -3.42 5.87 -20.09 -0.12 -3.54 16 17 C -0.08 -1.63 9.60 22.53 0.22 -1.42 16 18 C -0.13 -1.78 10.03 22.23 0.22 -1.56 16 19 C -0.09 -0.96 10.04 22.33 0.22 -0.74 16 20 C -0.13 -1.48 10.03 22.23 0.22 -1.25 16 21 C -0.09 -1.38 9.54 22.53 0.21 -1.17 16 22 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 23 H 0.38 20.03 7.67 -92.71 -0.71 19.32 16 24 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 7.37 6.51 -92.71 -0.60 6.77 16 31 H 0.12 2.68 7.65 -2.91 -0.02 2.66 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.14 1.63 6.41 -2.91 -0.02 1.61 16 Total: -1.00 -72.55 304.54 1.70 -70.85 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.21 Total: 23.85 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 4.16 Total: -3.61 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -4.21 Total: -118.46 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -72.55 1.70 -70.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154227449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.532 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds